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162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
GRHL and PGR control WNT4 expression in the mammary gland via 3D 2 looping of conserved and species-specific enhancers [BC44 HC11 C57MG RNA-seq]
GEO Series GSE291779. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Consticted migration is associated with stable 3D genome structure differences in cancer cells (RNA-Seq)
GEO Series GSE143677. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [RNA-seq]
GEO Series GSE113430. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [RNA-seq]
GEO Series GSE129495. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
3D ECM-rich environment sustains the identity of naïve human iPSCs [Bulk RNA-seq in triplicate after 1, 4, and 7 days of culture]
GEO Series GSE161717. Homo sapiens. 53 samples. Type: Expression profiling by high throughput sequencing.
RNA-Chromatin Interactome Reveals ncRNA Functions for Transcription Regulation in 3D Genome Organization
GEO Series GSE85764. Homo sapiens; Drosophila melanogaster. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
BET Bromodomain Degradation Disrupts Function but Not 3D Formation of RNA Pol2 Clusters
GEO Series GSE260915. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-Cell RNA Sequencing Analysis of Kidney Organoids derived in 2D or 3D from SCTi004-A hiPSC line using the STEMdiff™ Kidney Organoid Kit
GEO Series GSE312980. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq of 3D-culture balding and non-balding dermal papilla cells
GEO Series GSE184866. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq analysis of 2D- and 3D-cultured pancreatic cancer cells
GEO Series GSE198192. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Dynamic 3D Genome and Epigenetic Landscapes of Macrophage Cells Reprogramming Gene Expression during Differentiation and Infection (RNA-Seq)
GEO Series GSE143982. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Hypoxia-induced phase separation of ZHX2 drives 3D chromatin remodeling and cancer metastasis (RNA-Seq)
GEO Series GSE260794. Homo sapiens. 45 samples. Type: Expression profiling by high throughput sequencing.
Neurulation of the cynomolgus monkey embryo achieved from 3D blastocyst culture [RNA-Seq]
GEO Series GSE218523. Macaca fascicularis. 44 samples. Type: Expression profiling by high throughput sequencing.
TEX cell fate and differentiation are shaped by 3D genome reorganization and chromatin architecture integrity [RNA-seq]
GEO Series GSE275499. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Uncovering changes in 3D-chromatin structure and dynamic gene expression during spermatogenesis [RNA-seq]
GEO Series GSE280547. Sus scrofa. 9 samples. Type: Expression profiling by high throughput sequencing.
Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis [RNA-seq]
GEO Series GSE274039. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [RNA-seq]
GEO Series GSE304453. Drosophila melanogaster. 21 samples. Type: Expression profiling by high throughput sequencing.
CTCF orchestrated enhancer hijacking accelerated tumorigenesis through remodeling 3D chromosomal architecture in NTS locus [RNA-seq]
GEO Series GSE136338. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
RNA surveillance controls 3D genome structure via stable cohesin chromosome interaction
GEO Series GSE85147. Schizosaccharomyces pombe; Saccharomyces cerevisiae. 120 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Single Cell RNA-Seq of iPSC-derived 3D Cardiac Organoids Reveals Cardiovascular Effects of Immunosuppressive Drugs
GEO Series GSE188211. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.