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208
datasets available to search
ShareScore release 0.9.0
Dataset results
208 results for “spatial association”
Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis
GEO Series GSE278662. Homo sapiens. 8 samples. Type: Other.
Reactivation of memory-encoding dentate gyrus neurons during memory consolidation is associated with subregion-specific, learning- and sleep-mediated biosynthetic changes [spatial protein expression l
GEO Series GSE229081. Mus musculus; blank sample. 123 samples. Type: Expression profiling by high throughput sequencing; Other.
Aging- and Alcohol-Associated Spatial Transcriptomic Signature in Mouse Acute Pancreatitis
GEO Series GSE235247. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial Transcriptomics reveals that cells that experience intratumoral hypoxia retain hypoxia-associated transcriptional programs after invading into oxygenated tumor regions.
GEO Series GSE240212. Homo sapiens. 2 samples. Type: Other.
3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations
GEO Series GSE87585. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing.
Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer’s disease
GEO Series GSE220442. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Spatial and functional dissection of cancer-associated fibroblasts-mediated immune modulation in H. pylori-associated gastric cancer [LACE-seq]
GEO Series GSE309051. Homo sapiens. 4 samples. Type: Other.
Antagonism between H3K27me3 and genome-lamina association drives atypical spatial genome organization in the totipotent embryo [scDam&T-seq]
GEO Series GSE218597. Mus musculus. 28 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment
GEO Series GSE199102. Homo sapiens. 608 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging
GEO Series GSE287202. Mus musculus. 6 samples. Type: Other.
Data from: Sensory deficiencies affect resources selection and associational effects at two spatial scales
Many insect species have limited sensory abilities and may not be able to perceive the quality of different types of resources while approaching patchily distributed resources. These restrictions may lead to differences in selection rates between separate patches and between different resource types within a patch, which may have consequences for associational effects between resources. In this study, we used an oviposition assay containing different frequencies of apple and banana substrates divided over two patches to compare resource selection rates of wild type Drosophila melanogaster at the between and within patch scales. Next, we compared the wild type behavior with that of the olfactory deficient strain Orco2, and the gustatory deficient strain PoxnΔM22-B5 and found comparable responses to patch heterogeneity and similarly strong selection rates for apple at both scales for the wild type and olfactory deficient flies. Their oviposition behavior translated into associational susceptibility for apple and associational resistance for banana. The gustatory deficient flies, on the other hand, no longer had a strong selection rate for apple, strongly differed in between and within patch selection rates from the wild type flies, and caused no associational effects between the resources. Our study suggests that differences in sensory capabilities can affect resource selection at different search behavior scales in different ways, and in turn underlie associational effects between resources at different spatial scales.
Integrative analysis of spatial and single-cell transcriptome data from human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis_Spatial H&E images
<p>High-resolution H&E images of spatial transcriptome data</p>
Figures and tables from: Host specialization and spatial divergence of bacteria associated with Peltigera lichens promote landscape gamma diversity
<p>This repository contains the figures and tables from the paper title "Host specialization and spatial divergence of bacteria associated with <em>Peltigera </em>lichens promote landscape gamma diversity". Detailed description of each figure and table are provided in the "Legends.docx" file.</p>
A Genome-wide Association Study on the Endophenotype of Spatial Working Memory in ADHD
ClinicalTrials.gov study NCT02710929. IPD Sharing: NO. Countries: 1. Publications: 0.
Spatial Multi-omics Reveals the Heterogeneity of Tumor Microenvironment in the OSF-Associated OSCC
GEO Series GSE220978. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockad
GEO Series GSE300288. Mus musculus. 31 samples. Type: Expression profiling by high throughput sequencing.
Data from: Sensory deficiencies affect resources selection and associational effects at two spatial scales
Open the record for dataset details and reuse information.
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium]
GEO Series GSE250346. Homo sapiens. 45 samples. Type: Other.
Spatial transcriptomics reveal lineage complexity of gastric incomplete intestinal metaplasia and its association with gastric cancers [scRNA-Seq]
GEO Series GSE295401. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts [spatial transcriptomics]
GEO Series GSE229532. Mus musculus. 2 samples. Type: Other; Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.