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1,666
datasets available to search
ShareScore release 0.9.0
Dataset results
1,666 results for “human genome”
Discovery of new imprinted genes by genome-wide DNA methylation comparison between human androgenetic and parthenogenetic induced pluripotent stem cells
GEO Series GSE146202. Homo sapiens. 7 samples. Type: Methylation profiling by high throughput sequencing.
MeCP2 regulates genome-wide gene expression through recognition of H3K27me3 [ChIP_human]
GEO Series GSE122364. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
LINE-1 retrotransposition impacts the genome of human pre-implantation embryos and extraembryonic tissues [twins]
GEO Series GSE149476. Homo sapiens. 8 samples. Type: Genome variation profiling by high throughput sequencing.
Characterization of Mutational Status, Spheroid Formation, and Drug Response of a New Genomically-Stable Human Ovarian Clear Cell Carcinoma Cell Line, 105C (Oncomine)
GEO Series GSE160570. Homo sapiens. 1 samples. Type: Genome variation profiling by high throughput sequencing.
Source-tracking fecal contamination by genomic analysis of Escherichia coli from human and animal hosts
GEO Series GSE21115. Escherichia coli str. K-12 substr. MG1655; Escherichia coli. 24 samples. Type: Genome variation profiling by array.
Whole Exome Sequencing of Craniopharyngioma Tumors at Human Genome Sequencing Center, Baylor College of Medicine
Craniopharyngioma is rare dysontogenic tumor that occurs at the base of the brain, above the pituitary gland. It is one of the most commonly diagnosed brain tumors in children aged 5-10 years old. In the United States, there are an estimated 350 new cases of craniopharyngioma diagnosed each year. Craniopharyngioma is thought to be derived from remnants of the developmental (embryonic) tissue from which the pituitary gland is derived. Although craniopharyngioma is a histologically benign tumor, it has a malignant behavior. They occur most commonly in the sellar and suprasellar regions, posing great challenges to clinical management. Activating mutations in the beta-catenin gene, CTNNB1 were identified in the majority of adamantinomatous craniopharyngiomas whereas the contribution of other genetic factors has yet to be explored. With the collaboration of Texas Children's Cancer and Hematology Centers at Baylor College of Medicine, the Human Genome Sequencing Center had access to 29 tumor specimens and matched normal blood samples from Craniopharyngioma patients. Whole-exome sequencing was performed to characterize the profile of somatic mutations. The deposited BAM files record the sequence alignments used to generate the mutation data.
Direct GR binding sites potentiate clusters of TF binding across the human genome [2]
GEO Series GSE79425. Homo sapiens. 6 samples. Type: Other.
Genome-wide screening of temporal responsive genes induced by a low concentration of the carcinogen N-methyl-N'-nitro-N-nitrosoguanidine in a normal human cell line
GEO Series GSE21270. Homo sapiens. 18 samples. Type: Expression profiling by array.
Datasets used in Venice et al., "An evolutionary perspective on fungal human pathogens: the genomes of Scedosporium between environmental challenges and opportunism"
<p>This datasets collection includes:</p> <p>- For <em>Scedosporium aurantiacum</em> MUT6114 and <em>S. minutisporum </em>MUT6113: fasta files with assembled genome sequences, and gff files with coordinates of both genes and putative TEs insertions. All these files were generated by the authors of this study.</p> <p>- For <em>S. apiospermum</em> IHEM 14462 and <em>Lomentospora prolificans</em> JHH-5317: gff files containing putative TEs insertions only, since the genomic sequences and the gene models were produced by other authors and deposited in the NCBI database under accession numbers GCF_000732125.1 and GCA_002276285.1, respectively.</p> <p>- For <em>S. apiospermum </em>HDO1<em>, S. aurantiacum</em> WM09.24, <em>S. boydii</em> IHEM23826, <em>S. dehoogii</em> 120008799-01-4,<em> Scedosporium</em> sp. IMV00882 and <em>Scopulariopsis brevicaulis</em> LF580: gff files with coordinates of both genes and putative TEs insertions, since the genomic sequences were produced by other authors and deposited in the NCBI database under accession numbers GCA_002158515.1, GCA_000812075.1, GCA_002221725.1, GCA_002812735.1, GCA_001931805.1 and GCA_017657125.1, respectively.</p> <p> </p>
Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis
GEO Series GSE93286. Homo sapiens. 6 samples. Type: SNP genotyping by SNP array.
LINE-1 retrotransposition impacts the genome of human pre-implantation embryos and extraembryonic tissues [hEMB]
GEO Series GSE149472. Homo sapiens. 8 samples. Type: Genome variation profiling by high throughput sequencing.
In Vitro Model for a Drug Assessment of Cytochrome P450 Family 3 Subfamily A Member 4 Substrates Using Human Induced Pluripotent Stem Cells and Genome Editing Technology
GEO Series GSE159159. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
The genomic landscape of microRNA-target interactions in human cells
GEO Series GSE112006. Homo sapiens. 42 samples. Type: Other.
DNA-RNA three-stranded hybrids: from the telomere to the genome (human dataset)
GEO Series GSE143918. Homo sapiens. 4 samples. Type: Other.
Genome-wide analysis of a transcriptional network of the Sterol Regulatory Element Binding Protein, Sre1, in the human fungal pathogen Cryptococcus neoformans
GEO Series GSE135040. Cryptococcus neoformans H99. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Genome-wide mRNA profile of human gastric normal and gastric cancer tissues
GEO Series GSE146996. Homo sapiens. 65 samples. Type: Expression profiling by array.
Differential Genomic Effects of Six Different Nanomaterials on Human Liver HepG2 Cells
GEO Series GSE117056. Homo sapiens. 120 samples. Type: Expression profiling by array.
Whole genome expression in human tissues
GEO Series GSE18676. Homo sapiens. 360 samples. Type: Expression profiling by genome tiling array; Non-coding RNA profiling by genome tiling array; Expression profiling by array.
Comparative genomic hybridization of human embryonic stem cell lines deposited in the National Stem Cell Bank
GEO Series GSE9313. Homo sapiens. 155 samples. Type: Genome variation profiling by genome tiling array.
Genome-wide analysis of a transcriptional network of the Sterol Regulatory Element Binding Protein, Sre1, in the human fungal pathogen Cryptococcus neoformans (ChIP-seq)
GEO Series GSE135038. Cryptococcus neoformans H99. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.