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1,696
datasets available to search
ShareScore release 0.9.0
Dataset results
1,696 results for “DNA sequence”
Circulating tumor DNA sequencing provides comprehensive mutation profiling for pediatric central nervous system tumors
GEO Series GSE210323. Homo sapiens. 2 samples. Type: Genome variation profiling by array.
Genome-wide maps of DNA methylation in zebrafish larvae through MeDIP-sequencing after benzo[a]pyrene exposure
GEO Series GSE87192. Danio rerio. 8 samples. Type: Methylation profiling by high throughput sequencing.
Inference of emergent spatio-temporal processes from single-cell sequencing reveals feedback between de novo DNA methylation and chromatin condensates [BiSulfite-seq]
GEO Series GSE165954. Mus musculus. 288 samples. Type: Methylation profiling by high throughput sequencing.
DNA sequence determines epigenetic bistability at imprinting control regions [ChIP-Seq]
GEO Series GSE176459. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD
GEO Series GSE228707. Mus musculus; Homo sapiens. 55 samples. Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Sequencing 5-formyluracil in genome DNA at single-base resolution
GEO Series GSE164138. Homo sapiens. 6 samples. Type: Other.
Bisulfite sequencing data of one human DNA sample
GEO Series GSE27239. Homo sapiens. 32 samples. Type: Methylation profiling by high throughput sequencing.
DNA sequence determines epigenetic bistability at imprinting control regions [WGBS]
GEO Series GSE203404. Mus musculus. 2 samples. Type: Methylation profiling by high throughput sequencing.
Phylogenetic trees of genus Oncidium Sw. based on analysis of DNA sequences
<p>Genus <em>Oncidium Sw</em>. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as <em>Odontoglossum</em> Kunth. or <em>Miltonia</em> Lindley remain blurred. The aim of the study was to determine the phylogenetic relationships within the genus <em>Oncidium</em> <em>s.lato</em> based on the DNA sequences analysis. The correlation between molecular data and geographical distribution of the studied species was also examined. Two markers were used for the analysis: the ITS sequence derived from the nuclear genome and the matK gene that is part of mitochondrial DNA. Sequences were obtained by DNA isolation from frozen leaves, polymerase chain reaction (PCR) and sequencing. For their analysis in the PAUP* program, a feature-based parsimony (MP) method was used, and for assessing the reliability of the resulting trees, the non-parametric bootstrap method. The ITS MP search resulted in 10 000 trees (CI=0.49; RI=0.631). The aligned matrix resulted in 814 characters of which 433 were parsimony informative. The matK MP search resulted in 10 000 trees (CI=0.505; RI=0.714). The aligned matrix resulted in 1359 characters of which 358 were parsimony informative. </p> <p>This dataset contains two image files with phylogenetic trees - the first one based on ITS analysis of 190 species and the second one based on the matK analysis of 154 species. The upper numbers above branches are the Fitch values and lower numbers are the bootstrap values. The information about geographical distribution is added. The dataset includes also two NEXUS files (for ITS and for matK) with DNA sequences. </p>
R code and datasets for ITS2 DNA metabarcoding stigma sequence data
Open the record for dataset details and reuse information.
Dataset related to article "Current and New Next-Generation Sequencing Approaches to Study Mitochondrial DNA"
<p>Dataset contain raw data relate to article mentioned at title</p>
Regulatory DNA in A. thaliana can tolerate high levels of sequence divergence
GEO Series GSE101952. Arabidopsis thaliana. 3 samples. Type: Expression profiling by high throughput sequencing.
Iso-CUT&MAP (Isolated cell-based Cut Under Target and Mapping Apoptotic Protein-binding sequences): a novel strategy for high-resolution mapping of DNA binding sites
GEO Series GSE237814. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Profiling of DNA Methylation during RANKL Induced Osteoclastogenesis using Whole-Genome Bisulfite Sequencing
GEO Series GSE133515. Mus musculus. 3 samples. Type: Methylation profiling by high throughput sequencing.
Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify differences in DNA methylation
GEO Series GSE169235. Mus musculus; Homo sapiens; Rattus norvegicus. 205 samples. Type: Methylation profiling by genome tiling array; Methylation profiling by high throughput sequencing.
Long-reads Next Generation Sequencing for the analysis of mitochondrial DNA
<p>Long-reads Next Generation Sequencing for the analysis of mitochondrial DNA</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.