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Figure 2 from: Lucio-García JN, Sánchez-Reyes UJ, Horta-Vega JV, Reyes-Muñoz JL, Clark SM, Niño-Maldonado S (2022) Seasonal and microclimatic effects on leaf beetles (Coleoptera, Chrysomelidae) in a tropical forest fragment in northeastern Mexico. ZooKeys 1080: 21-52. https://doi.org/10.3897/zookeys.1080.76522
Figure 2 Individual dispersion of leaf beetle species whose association for microclimatic variables was significant in the rainy season AAlagoasa trifasciataBCentralaphthona diversaCLabidomera suturellaDMonomacra bumeliaeEWalterianella sp. 1 FZenocolaspis inconstans. At each species panel: the gray circles represent the presence of the species in the sample, and the size of the circle is proportional to its abundance; straight lines represent vectors and indicate the dispersion of the species from the average position (centroid) towards each of the evaluation units where it was recorded; and ellipses represent the concentration of 95% of the specimens of the species. G canonical correlation values (loadings) between microclimatic variables and the abundance of Chrysomelidae. Abbreviations: MW: Maximum wind speed, AW: average wind speed, Tem: temperature, RH: relative humidity, HI: heat index, DP: dew point, Ev: evapotranspiration.
Figure 1 from: Lucio-García JN, Sánchez-Reyes UJ, Horta-Vega JV, Reyes-Muñoz JL, Clark SM, Niño-Maldonado S (2022) Seasonal and microclimatic effects on leaf beetles (Coleoptera, Chrysomelidae) in a tropical forest fragment in northeastern Mexico. ZooKeys 1080: 21-52. https://doi.org/10.3897/zookeys.1080.76522
Figure 1 Location of the study area. A Ejido Santa Ana (red point) in Tamaulipas State, Mexico BNPA Altas Cumbres (red polygon) within Victoria municipality in Tamaulipas C Distribution of the sampling plots (blue squares) in the semideciduous tropical forest.
Figure 5 from: Lucio-García JN, Sánchez-Reyes UJ, Horta-Vega JV, Reyes-Muñoz JL, Clark SM, Niño-Maldonado S (2022) Seasonal and microclimatic effects on leaf beetles (Coleoptera, Chrysomelidae) in a tropical forest fragment in northeastern Mexico. ZooKeys 1080: 21-52. https://doi.org/10.3897/zookeys.1080.76522
Figure 5 Environmental ranges of leaf beetles during the dry season. Abbreviations: Chae sp. 1 (Chaetocnema sp. 1), Syph sp. 1 (Syphrea sp. 1), Acall sp. 7 (Acallepitrix sp. 7), Brach pumi (Brachycoryna pumila), Epit sp. 1 (Epitrix sp. 1), Centra dive (Centralaphthona diversa), Alag trif (Alagoasa trifasciata).
Agent‐based modeling of the effects of forest dynamics, selective logging, and fragment size on epiphyte communities
<p>Forest canopies play a crucial role in structuring communities of vascular epiphytes by providing substrate for colonization, by locally varying microclimate, and by causing epiphyte mortality due to branch or tree fall. However, as field studies in the three-dimensional habitat of epiphytes are generally challenging, our understanding of how forest structure and dynamics influence the structure and dynamics of epiphyte communities is scarce. Mechanistic models can improve our understanding of epiphyte community dynamics. We present such a model that couples dispersal, growth, and mortality of individual epiphytes with substrate dynamics, obtained from a three-dimensional functional-structural forest model, allowing the study of forest-epiphyte interactions. After validating the epiphyte model with independent field data, we performed several theoretical simulation experiments to assess how (1) differences in natural forest dynamics, (2) selective logging, and (3) forest fragmentation could influence the long-term dynamics of epiphyte communities. The proportion of arboreal substrate occupied by epiphytes (i.e. saturation level) was tightly linked with forest dynamics and increased with decreasing forest turnover rates. While species richness was, in general, negatively correlated with forest turnover rates, low species numbers in forests with very low turnover rates were due to competitive exclusion when epiphyte communities became saturated. Logging had a negative impact on epiphyte communities, potentially leading to a near-complete extirpation of epiphytes when the simulated target diameters fell below a threshold. Fragment size had no effect on epiphyte abundance and saturation level but correlated positively with species numbers. Synthesis: The presented model is a first step towards studying the dynamic forest-epiphyte interactions in an agent-based modelling framework. Our study suggests forest dynamics as key factor in controlling epiphyte communities. Thus, both natural and human-induced changes in forest dynamics, e.g. increased mortality rates or the loss of large trees, pose challenges for epiphyte conservation.</p>
Supplementary material 2 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Neighbor-joining topology
Supplementary material 1 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Barcode analysis using the BOLD workbench
Figure 1 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 1 Various woodlouse species of Germany AOniscus asellus Linnaeus, 1758 BArmadillidium nasatum Budde-Lund, 1885 CTrachelipus ratzeburgii (Brandt, 1833) DMesonicus alpicola (Heller, 1858) EPhiloscia muscorum (Scopoli, 1763) FHaplophthalmus mariae Strouhal, 1953 GArmadillidium opacum (C. Koch, 1841) HPlatyarthrus hoffmannseggii Brandt, 1833. Scale bar: 1 mm. Photograph credits: A–G Jörg Spelda H Armin Rose.
Supplementary material 3 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Neighbor-joining topology of the BOLD workbench including BIN analysis
Figure 2 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 2 Neighbor-joining (NJ) topology of the analyzed isopod species based on Kimura 2-parameter distances. Triangles show the relative number of individual's sampled (height) and sequence divergence (width). Red triangles highlight terrestrial species with intraspecific maximum pairwise distances > 2.2%, whereas dark blue triangles indicate freshwater species with such distances. Numbers next to nodes represent non-parametric bootstrap values > 90% (1,000 replicates). Asterisks indicate species not recorded in Germany.
Figure 1 in Resource use and coexistence of three hylid species in temporary ponds of an Eastern Amazonian forest fragment
Figure 1. Location of the Gunma Ecological Park, Santa Barbará municipality, Pará State, Brazil.
Fig. 1 in Cordulegaster bidentata Selys, 1843 in fragmented landscape of the Wielickie Foothills: reassesement of the northern limit of species range in the Western Carpathians
Fig. 1. Global range of Cordulegaster bidentata (dark grey), according to IUCN (2009).
Project data for: Juvenile salmon habitat use drives variation in growth and highlights vulnerability to river fragmentation
<p>Project data for:</p> <p>Sethi SA, Carey MP, Gerken J, Harris B, Cunningham C, Wolf N, Restrepo F, Ashline J (2022) Juvenile salmon habitat use drives variation in growth and highlights vulnerability to river fragmentation. <em>Ecosphere</em>. In press.</p> <p>Files include a ReadMe text file and a .csv data file.</p>
1. Falmata Blama, déplacée de la crise Boko Haram (récit d'un fragment de vie)
<p>Déplacée de Limani, Falmata Blama est la présidente de l’association des familles de déplacé-e-s de la crise Boko Haram dans la ville de Maroua, Extrême-Nord du Cameroun. Elle est femme au foyer et mère de 07 enfants. Résidente au quartier Lougguéo, Falmata Blama est de l’ethnie kanuri.</p> <p>***</p> <p>Ce travail a été supervisé par SAÏBOU ISSA, Coordonnateur du Centre d'Études et de Recherche en Paix, Sécurité et Intégration.</p> <p>***</p> <p>La crise Boko Haram, débutée en 2009, a provoqué le déplacement des populations des zones frontalières vers la capitale de la région de l’Extrême-Nord. Le champ des <em>crisis studies</em> a quelque peu négligé les problématiques linguistiques au détriment des dynamiques et phénomènes sociopolitiques des migrations internes et transfrontalières. Douze ans après le déclenchement de ce conflit, la petite enquête de terrain, financée par le Centre d’Études et de Recherche en Paix, Sécurité et Intégration (CERPSI), revient vers les déplacés et les réfugiés dans l’optique de recueillir des données qualitatives sur les stéréotypes, la stigmatisation et l’adaptation des victimes de la guerre. Il a principalement été question de capter, dans les récits de vie, les mécanismes conflictuels qui provoquent les stigmatisations ethnolinguistiques des déplacés désormais installés dans la ville de Maroua. Le jeu de données qui est présenté ici est ouvert à la communauté scientifique, aux différents acteurs sociaux et aux organisations qui opèrent sur les questions de crise en général et au Sahel en particulier. Il est composé de dix entretiens dans lesquels les victimes racontent leur trajectoire, leurs traumatismes et leur résilience. </p>
FIGURE 3. Riccia sarieae A.E.D. Daniels & D.T.T in Riccia sarieae (Ricciaceae: Marchantiophyta)-a new species from a fragmented hillock of the Western Ghats, India
FIGURE 3. Riccia sarieae A.E.D. Daniels & D.T.T. Daniels Location
Fragment analyser sample sheet
<p>Sample sheet for fragment analyser</p>
Supplementary material 3 from: Mullin KE, Rakotomanga MG, Dawson J, Glaw F, Rakotoarison A, Orozco-terWengel P, Scherz MD (2022) An unexpected new red-bellied Stumpffia (Microhylidae) from forest fragments in central Madagascar highlights remaining cryptic diversity. ZooKeys 1104: 1-28. https://doi.org/10.3897/zookeys.1104.82396
Table S1
Supplementary material 4 from: Mullin KE, Rakotomanga MG, Dawson J, Glaw F, Rakotoarison A, Orozco-terWengel P, Scherz MD (2022) An unexpected new red-bellied Stumpffia (Microhylidae) from forest fragments in central Madagascar highlights remaining cryptic diversity. ZooKeys 1104: 1-28. https://doi.org/10.3897/zookeys.1104.82396
Table S2
Supplementary material 2 from: Mullin KE, Rakotomanga MG, Dawson J, Glaw F, Rakotoarison A, Orozco-terWengel P, Scherz MD (2022) An unexpected new red-bellied Stumpffia (Microhylidae) from forest fragments in central Madagascar highlights remaining cryptic diversity. ZooKeys 1104: 1-28. https://doi.org/10.3897/zookeys.1104.82396
Figure S2
Supplementary material 1 from: Mullin KE, Rakotomanga MG, Dawson J, Glaw F, Rakotoarison A, Orozco-terWengel P, Scherz MD (2022) An unexpected new red-bellied Stumpffia (Microhylidae) from forest fragments in central Madagascar highlights remaining cryptic diversity. ZooKeys 1104: 1-28. https://doi.org/10.3897/zookeys.1104.82396
Figure S1
Text-fig. 8. Mhengere Hill fossiliferous localities (1–3). Silicified tree trunks and fragments of wood are abundant in the poorly indurated basal deposits (marly sand and conglomerate) as well as in the silicified lime-rich sandstones that form the hill, which is interpreted to be the remains of a palaeopan. Image modified from Google Earth. in Stratigraphy, Chronology And Palaeontology Of The Tertiary Rocks Of The Cheringoma Plateau, Mozambique
Text-fig. 8. Mhengere Hill fossiliferous localities (1–3). Silicified tree trunks and fragments of wood are abundant in the poorly indurated basal deposits (marly sand and conglomerate) as well as in the silicified lime-rich sandstones that form the hill, which is interpreted to be the remains of a palaeopan. Image modified from Google Earth.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.