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1,760
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Dataset results
1,760 results for “small RNA”
small RNA and mRNA sequencing data of human granulosa cells from PCOS women with insulin resistance
GEO Series GSE124968. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Small molecule RNA therapeutics to target prostate cancer [DMS MaP-seq]
GEO Series GSE283444. Homo sapiens. 32 samples. Type: Other.
Small RNA sequencing of small extracellular vesicles secreted by nonsenescent vs. senescent human umbilical cord mesenchymal stem cells
GEO Series GSE195634. Homo sapiens. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Identification of small RNA loci that are synthesized by RNA-dependent RNA polymerases1/2/6
GEO Series GSE72982. Arabidopsis thaliana. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Small RNA profile of 4 biofluids from healthy individuals
GEO Series GSE199507. Homo sapiens. 134 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Small RNA next generation sequencing of miRNAs in MCF7 cells derived mammosphere treated with withaferin A
GEO Series GSE181099. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Expression profiles of plasma transfer RNA-derived small RNAs in patients with pathological cardiac hypertrophy
GEO Series GSE220617. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
An RNA-recognition motif protein from Helicobacter pylori binds single-stranded RNAs and stabilizes a pathogenicity island-encoded small RNA
GEO Series GSE63834. Helicobacter pylori. 10 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome, Small RNA, and Degradome Sequencing Reveals the Roles of MicroRNAs in Response to High Night Temperature Stress at the Filling Stage of Rice
GEO Series GSE225259. Oryza sativa. 12 samples. Type: Expression profiling by high throughput sequencing.
Systemic proteomic and small RNA profile analysis of extracellular vesicles derived from Theileria annulata
GEO Series GSE279977. Bos taurus. 15 samples. Type: Non-coding RNA profiling by high throughput sequencing.
small RNA discovery in fission yeast Schizosaccharomyces japonicus
GEO Series GSE26902. Schizosaccharomyces japonicus. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [small RNA-Seq]
GEO Series GSE78900. Oryza sativa. 3 samples. Type: Non-coding RNA profiling by high throughput sequencing.
RNA-seq of human small airawy epithelial cells in patients with COPD and Never-smoker
GEO Series GSE162154. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Small RNA Sequencing facilitates quantitative analysis of miRNA expression in feces from mice during DSS-induced colitis and the recovery phase
GEO Series GSE165648. Mus musculus. 11 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Small RNA and Degradome Deep Sequencing Reveals the roles of microRNAs in Seed Expansion in Peanut (Arachis hypogaea L.)
GEO Series GSE110195. Arachis hypogaea. 14 samples. Type: Other; Non-coding RNA profiling by high throughput sequencing.
Small RNA sequencing of small extracellular vesicles derived from senescent vs. nonsenescent human dermal fibroblasts (HDFs)
GEO Series GSE184084. Homo sapiens. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Small RNA-seq data from leaf, stem trichomes, bald stems and leaf primordiums from different tomato genetic backgrounds
<p><strong>Description</strong></p> <p>Various tissues of cultivated and wild tomato genotypes were harvested.</p> <p>Trichomes are stem trichomes (isolated from the stem of tomatoes).</p> <p><strong>RNA isolation</strong></p> <p>To isolate RNA, plant tissues were flash frozen in liquid nitrogen immediately after harvesting and stored at −80°C prior to RNA extraction. Frozen pellets were grounded by using a mortar and pestle before immersion in QIAzol Lysis Reagent (Qiagen). RNA was isolated and purified into two separate fractions (>200 nt and <200 nt) using the miRNeasy Mini kit (Qiagen). For the >200 nt RNA an on-column treatment was included using the RNase-free DNase set (Qiagen).</p> <p><strong>Small RNA-Seq</strong></p> <p>Small RNA-Seq libraries were generated from the <200 nt RNA fraction according to the manufacturers’ protocols using the Small RNA-Seq Library Prep Kit (Lexogen). The size distribution of the libraries with indexed adapters was assessed using a 2200 TapeStation System with Agilent D1000 ScreenTapes (Agilent Technologies). The libraries were quantified on a QuantStudio 3 Real-Time PCR System (Thermo Fisher Scientific) using the NEBNext Library Quant Kit for Illumina (New England BioLabs) according to the instructions of the manufacturer. The libraries were clustered and sequenced (75 bp) on a NextSeq 550 Sequencing System (Illumina) using a NextSeq 500/550 High Output Kit v2.5 (75 Cycles) (Illumina).</p> <p> </p> <p><strong>The list of samples</strong> is available in the <a href="https://zenodo.org/api/files/195143fa-2210-4b7f-bfe2-a649e124b7b0/sample_list.csv">sample_list.csv</a> file.</p> <ul> <li>Myc-1 stands for a knock-out mutant of the MYC1 gene (Solyc08g005050). The line full name is MS5-4.</li> <li>Pik is an introgression line containing a fragment of chromosome 1 from <em>S. habrochaites</em> PI127826 into a MicroTom genetic background. </li> </ul> <p> </p> <p><strong>Pooled samples</strong></p> <p>Some samples corresponding to the same tomato genotype and tissue were pooled altogether and are also available in fastq format.</p> <pre><code class="language-markdown">| species | genotype | pool_of | tissue | file | reads | |--------------|------------|---------------|----------------|----------|----------| | habrochaites | PI127826 | S01, S02, S03 | trichomes | PI127826.fastq.gz | 16,539,495 | | lycopersicum | Moneymaker | S04, S05, S06 | trichomes | Moneymaker.fastq.gz | 11,539,748 | | habrochaites | LYC4 | S07, S08, S25 | trichomes | LYC4.fastq.gz | 15,980,718 | | lycopersicum | LA4024 | S10, S11, S12 | trichomes | LA4024.fastq.gz | 13,888,953 | | habrochaites | LA1777 | S13, S14, S15 | trichomes | LA1777.fastq.gz | 14,136,265 | | pennellii | LA0716 | S19, S20, S21 | trichomes | LA0716.fastq.gz | 14,045,182 |</code></pre> <p> </p>
Small RNA-seq and messenger RNA-seq of F1 cross between different species of tomato (lycopersicum, habrochaites)
<p>Small RNA and messenger RNA data from stem trichomes of various crosses (S. lycopersicum x S. habrochaites or S. habrochaites with itself). </p> <p>There are now also R2 reads for the samples. Reason for this is that the Mid Output flow cell doesn’t have the 1x75 option.</p> <p>The sample list is available in F1_samples.csv</p>
Identification of clinical trait–related small RNA biomarkers with weighted gene co-expression network analysis for personalized medicine in endocervical adenocarcinoma
GEO Series GSE176579. Homo sapiens. 14 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Sequencing of Caenorhabditis elegans at 4 different time points after Rotenone and DMSO treatment (small RNA)
GEO Series GSE110848. Caenorhabditis elegans. 22 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.