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440 results for “Combined analysis”
Data from: Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets
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Stability analysis of roadside backfill body at gob-side entry retaining under combined static and dynamic loading
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Isotope analysis combined with DNA barcoding provide new insights into the dietary niche of khulan in the Mongolian Gobi
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Data from: Flow cytometry combined with viSNE for analysis of microbial biofilms and detection of microplastics
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Data from: Quantifying population size of migrant birds at stopover sites: combining count data with stopover length estimated from stable isotope analysis
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Data from: An experimental analysis of the molecular effects of trastuzumab (herceptin) and fulvestrant (falsodex), as single agents or in combination, on human HR+/HER2+ breast cancer cell lines and mouse tumor xenografts
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Data from: Combining micro-volume isotope analysis and numerical simulation to reproduce fish migration history
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Data from: A combined mesowear analysis of Mexican Bison antiquus shows a generalist diet with geographical variation
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Integrative taxonomic analysis to reveal the species status of Bombus flavidus, combining COI and nuclear sequencing, wing morphometrics and secretions used for mate attraction as well as patterns of color polymorphism
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Data from: Combined transcriptome and metabolome analysis identifies defence responses in spider-mite infested pepper
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Data from: Combined effects of natural enemies and competition for resources on a forest defoliator: a theoretical and empirical analysis
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Combined alignment fasta file used for the phylogenetic analysis of Micropsalliota
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Competitiveness prediction for nodule colonization in Sinorhizobium meliloti through combined in vitro tagged strain characterization and genome-wide association analysis
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Fig. 6 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 6. Distribution of Winitia in Thailand. Winitia expansa Chaowasku (■), Winitia longipes (Craib) Chaowasku & Aongyong comb. nov. (●), and Winitia thailandana Chaowasku & Aongyong sp. nov. (▲).
Fig. 3 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 3. Flowers and floral organs of Winitia cauliflora (Scheff.) Chaowasku (A, C, E, G) and Winitia longipes (Craib) Chaowasku & Aongyong comb. nov. (B, D, F, H). A–B. Flowers. C–D. Male flowers with petals removed. E–F. Stamens, abaxial (left) and adaxial (right) sides. G–H. Female flowers with petals removed. A, C, E, G from Chaowasku 185 (CMUB); B from Gardner et al. ST1665 (L); D, F, H from Aongyong 8 (CMUB). Photographs by T. Chaowasku (A) and S. Gardner (B).
Fig. 1 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 1. Phylogram derived from maximum likelihood analysis, with support values shown: SR/BS/PP. Maximally supported clades are represented by thick branches without support values shown; strongly supported clades are represented by thick branches with support values shown; branches without support values shown signify SR <50%, BS <50%, and PP <0.85. ** signifies SR/BS <50%. Scale bar unit = substitutions per site. MAL. = Malmeeae; MON. = Monocarpieae.
Fig. 4 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 4. Flowers and floral organs of Winitia thailandana Chaowasku & Aongyong sp. nov. A–B. Flower. C. Flower with petals removed. D. Stamen, abaxial (above) and adaxial (below) sides. E. Back side of flower, showing sepals (abaxial side). A, B from Gardner & Sidisunthorn ST0817 (L), photographs by S. Gardner; C–E from Aongyong 9 (CMUB).
Fig. 2 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 2. Part of multiple sequence alignment of trnL-trnF intergenic spacer, showing an indel (arrow) potentially diagnostic for generic discrimination in Miliuseae.
Data from: Combined molecular phylogenetic analysis of the Orthoptera (Arthropoda, Insecta) and implications for their higher systematics
A phylogenetic analysis of mitochondrial and nuclear rDNA sequences from species of all the superfamilies of the insect order Orthoptera (grasshoppers, crickets and relatives) confirmed that although mitochondrial sequences provided good resolution of the youngest superfamilies, nuclear rDNA sequences were necessary to separate the basal groups. To try to reconcile these data sets into a single fully resolved orthopteran phylogeny, we adopted consensus and combined data strategies. The consensus analysis produced a partially resolved tree, lacking several well-supported features of the individual analyses. However, this lack of resolution was explained by an examination of resampled data sets that identified the likely source of error as the relatively short length of the individual mitochondrial data partitions. In a subsequent comparison in which the mitochondrial sequences were initially combined, we observed less conflict. We then used two approaches to examine the validity of combining all of the data in a single analysis; comparative analysis of trees recovered from resampled data sets and the application of a randomization test. The results did not point to significant levels of heterogeneity in phylogenetic signal between the mitochondrial and nuclear data sets, and we therefore proceeded with a combined analysis. Reconstructing phylogenies under the minimum evolution and maximum likelihood optimality criteria, we examined monophyly of the major orthopteran groups using nonparametric and parametric bootstrap analysis and Kishino-Hasegawa tests. Our analysis suggests that phylogeny reconstruction under the ML criteria is the most discriminating approach for the combined sequences. The results indicate that the caeliferan Pneumoroidea and Pamphagoidea (as previously suggested) are polyphyletic. The Acridoidea is redefined to include all pamphagoid families other than the Pyrgomorphidae, which we propose should be accorded superfamily status.
Data from: Boundary strength analysis: combining colour pattern geometry and coloured patch visual properties for use in predicting behaviour and fitness
1.Colour patterns are used by many species to make decisions that ultimately affect their Darwinian fitness. Colour patterns consist of a mosaic of patches that differ in geometry and visual properties. Although traditionally pattern geometry and colour patch visual properties are analysed separately, these components are likely to work together as a functional unit. Despite this, the combined effect of patch visual properties, patch geometry, and the effects of the patch boundaries on animal visual systems, behaviour and fitness are relatively unexplored. 2.Here we describe Boundary Strength Analysis (BSA), a novel way to combine the geometry of the edges (boundaries among the patch classes) with the receptor noise estimate (ΔS) of the intensity of the edges. The method is based upon known properties of vertebrate and invertebrate retinas. The mean and SD of ΔS (mΔS, sΔS) of a colour pattern can be obtained by weighting each edge class ΔS by its length, separately for chromatic and achromatic ΔS. This assumes those colour patterns, or parts of the patterns used in signalling, with larger mΔS and sΔS are more stimulating and hence more salient to the viewers. BSA can be used to examine both colour patterns and visual backgrounds. 3.BSA was successful in assessing the estimated conspicuousness of colour pattern variants in two species, guppies (Poecilia reticulata) and Gouldian finches (Erythrura gouldiae), both polymorphic for patch colour, luminance and geometry. 3D representations of the ΔS of patch edges (Fort Diagrams) of both species show that there is little or negative geometric correspondence between the chromatic and achromatic edges. All individuals have mΔS > 1.5 for both chromatic and achromatic measures, indicating the high within‐pattern contrast expected for display signals. In contrast from what one would expect from sexual selection, all guppies have mΔS less than expected from random contacts between all pairs of patch colour/luminance classes. The correlation between chromatic and luminance ΔS is negative in both species but zero when correlating all possible kinds of edges between the colours of each species and morph indicating non‐random colour geometry. 4.The pattern difference between chromatic and achromatic edges in both species reveals the possibility that chromatic and achromatic edges could function differently. The smaller than random expected mΔS values in guppies suggests an anti‐predator function because guppies are never found without predators. Moreover, mΔS could vary with predation intensity within and among species. BSA can be applied to any colour pattern used in intraspecific and interspecific behaviour. Seven predictions and four questions about colour patterns are presented. 5.In species which are very convex, both chromatic and luminance mΔS change with viewing angle; geometry of signalling is as important as signal geometry.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.