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1,582 results for “Manuscript”
Dataset used in manuscript Tailored Nanoscale Plasmon-Enhanced Vibrational Electron Spectroscopy
<p>This file contains the raw dataset used in the manuscript "Tailored Nanoscale Plasmon-Enhanced Vibrational Electron Spectroscopy" published in L. H. G. Tizei et al Nano Letters, 2020 (doi: 10.1021/acs.nanolett.9b04659)</p> <p><br> Data has been acquired using Nion Swift (https://nionswift.readthedocs.io/en/stable/). Experimental details can be found in L. H. G. Tizei et al Nano Letters, 2020 (doi: 10.1021/acs.nanolett.9b04659).<br> <br> The dataset has been analyzed using the following Python libraries:</p> <p>Numpy, Scipy, Hyperspy, Matplotlib</p> <p>EELS hyperspectral images have been aligned using the Hyperspy "align1D" method. Aligned EELS hyperspectral images are saved in files finished with "_Aligned.hspy":</p> <p>For the strong coupling experiments:<br> Tip 1 is on hBN<br> Tip 2 is on vacuum</p> <p>For each of the nanowires tips, a file with the fitted coefficients are available, as well as a plot of the data and the fitted curve.</p> <p>Datasets have been fitted with gaussian and/or lorentizan functions, as described in the published text.</p> <p>Any question can be forwarded to the corresponding authors of the published text.</p> <p> </p>
Data set related to the manuscript "Efficient prediction of Nucleus Independent Chemical Shifts for polycyclic aromatic hydrocarbons"
<p>Input/output files for Gaussian calculations, data sets for all plots shown in the manuscript "Efficient prediction of Nucleus Independent Chemical Shifts for polycyclic aromatic hydrocarbons", C code for the NICS calculations through the dipolar model and python code for the NICS calculations through the tight-binding model described in the manuscript.</p>
Data and R code for the revised manuscript "Downscaling digital soil maps using electromagnetic induction and aerial imagery"
<p>Data and R code for the revised manuscript "Downscaling digital soil maps using electromagnetic induction and aerial imagery". This is the code for the revised version of the manuscript, after adressing comments from reviewers. The data and code for the preprint, before submission to peer review (Møller et al., 2020), is available at <a href="https://doi.org/10.5281/zenodo.3699130">https://doi.org/10.5281/zenodo.3699130</a>.</p> <p>The R code was written for R version 3.6.3.</p> <p>References<br> Møller, A.B., Koganti, T., Beucher, A., Iversen, B.V. and Greve, M.H., 2020. Downscaling digital soil maps using electromagnetic induction and aerial imagery. EarthArXiv. <a href="http://dx.doi.org/10.31223/osf.io/a7xz6">http://dx.doi.org/10.31223/osf.io/a7xz6</a>. [preprint]</p>
Figure 2 in Identification of New World aquatic invertebrate illustrations in The Drake Manuscript
Figure 2. Illustration of (A) a lobster in The Drake Manuscript, © The Morgan Library & Museum, New York; (B) corresponding contemporary image of the species proposed to be the subject of the anonymous artist's illustrations. The lobster species is Panulirus argus (Latreille 1804) Caribbean spiny lobster. Image of P. argus © Florent Charpin. Reproduced by permission of Florent Charpin (www.reefguide.org). Permission to reuse must be obtained from the rightsholder.
Data and code for the manuscript: "Varying richness need not imply non-random species co-occurrence: implications for specifying null models"
<p>Data and R code for the manuscript "Varying richness need not imply non-random species co-occurrence: implications for specifying null models".</p>
Data accompanying the manuscript "Protocol Discovery for the Quantum Control of Majoranas by Differentiable Programming and Natural Evolution Strategies"
<p>Dataset for figures 2, A6 and A8 for the manuscript: "Protocol Discovery for the Quantum Control of Majoranas by Differentiable Programming and Natural Evolution Strategies." The dataset contains the optimal protocols for Majorana transport in both the Kitaev Chain model as well as the Proximity Coupled Semiconduncting Nanowire model obtained with Differentiable Programming and Natural Evolution Strategies. Also the Simulated Annealing (SA) optimal protocols for the Kitaev chain are included.</p>
Raw data accompanying the manuscript "Multiscale and multimodal optical imaging of the human liver"
<p>These are the raw datasets used to generate the figures for the manuscript entitled "Multiscale and multimodal optical imaging of the human liver". The file CARS_SRS.zip contains folders with all raw CARS and SRS data (TIFF format). The file CLSM.zip contains confocal laser scanning microscopy data using the manufacturers data format (Zeiss). The file LSFM.zip contains light sheet fluorescence microscopy data files using the manufacturers data format (LaVision Biotec). The file OPT.zip contains raw optical projection tomography data at different excitation wavelengths (TIFF format). The file SRSIM.zip contains reconstructed structured illumination microscopy data files (TIFF format).</p>
Characterization data for the manuscript "A data-driven perspective on the colours of metal-organic frameworks"
<p>Visualize the data in this dataset: <a href="https://www.c6h6.org/zenodo/record/4044212">open entry</a>. </p>
FIG. 5. — The serpent bova milking a cow. Illumination from manuscript MSL 11, fol. 137v in The comparative milk-suckling reptile
FIG. 5. — The serpent bova milking a cow. Illumination from manuscript MSL 11, fol. 137v, Archive of the Prague Castle, Library of the Metropolitan Chapter by St. Vitus.
dh/dt data of the manuscript "Surface Elevation Change of Glaciers Along the Coast of Prudhoe Land, Northwestern Greenland from 1985 to 2018 "
<p>This is a dataset including dt/dt data for periods of T0–T2, T0–T1, and T1–T2, which used in the manuscript "Surface Elevation Change of Glaciers Along the Coast of Prudhoe Land, Northwestern Greenland from 1985 to 2018".</p>
Latitudinal core habitat prediction data for the manuscript: "Seascape topography slows predicted range shifts in fish under climate change"
<p>Latitudinal locations of core environmental habitat for yellowtail kingfish (<em>Seriola lalandi</em>), Australian bonito (<em>Sarda australis</em>), Australian spotted mackerel (<em>Scomberomorus munroi</em>), narrow-barred Spanish mackerel (<em>Scomberomorus commerson</em>) and common dolphinfish (<em>Coryphaena hippurus</em>) nearshore of the continental shelf break (i.e. 200-m isobath) within 145 – 160°E, 15 – 45°S and between years 1998 – 2018.</p>
Processed TCGA BRCA and METABRIC datasets used in the Moanna manuscript
<p>This dataset consists of the processed multi-omics data and clinical labels used for training and evaluating Moanna (https://github.com/rlupat/moanna). This dataset is processed based on raw files downloaded from cbioportal. </p> <ul> <li> <p>(training) http://download.cbioportal.org/brca_metabric.tar.gz</p> </li> <li> <p>(testing) http://download.cbioportal.org/brca_tcga_pan_can_atlas_2018.tar.gz</p> </li> </ul>
Raw and analyzed data for manuscript: "Superhydrophilic coating of pine wood by plasma functionalization of self-assembled polystyrene spheres"
<p><strong>Abstract: </strong></p> <p>Self-assembling films typically used for colloidal lithography have been applied to pine wood substrates to change the surface wettability. Therefore, monodisperse polystyrene (PS) spheres have been deposited onto a rough pine wood substrate via dip coating. The resulting PS sphere film resembled a polycrystalline FCC-like structure with typical domain sizes of 5 – 15 single spheres. This self-assembled coating was further functionalized via an O<sub>2</sub> plasma. This plasma treatment strongly influenced the particle sizes in the outermost layer, and hydroxyl as well as carbonyl groups were introduced to the PS spheres’ surfaces, thus generating a superhydrophilic behaviour.</p>
Data and material for the manuscript "Mutation testing and self/peer assessment: analyzing their effect on students in a software testing course"
<p><strong>This repository is composed of two different parts: </strong></p> <ul> <li><a href="https://zenodo.org/record/4464300/files/Assessment%20data%20and%20Mutation%20Scores.xlsx?download=1">Assessment data and Mutation Scores</a> file contains the student-generated data used in the experience.</li> <li><a href="https://zenodo.org/record/4464300/files/experience-material.zip?download=1">Experience-material</a> file contains the files to be able to reproduce the experience.</li> </ul> <p> </p> <p><strong>The </strong><strong> <a href="https://zenodo.org/record/4464300/files/experience-material.zip?download=1">Experience-material</a> file for the lab is used in two sessions:</strong></p> <p>Session 1: Development and assessment of test suites</p> <p>In this session, the student has to develop a test suite for a program under test. At the end of the session, the test suite will be evaluated against a set of assessment criteria regarding the quality of the developed test suite.</p> <p>Files for this session:</p> <ul> <li>VVS-Lab6-S1 pdf file , with the description of this session.</li> <li>Material-S1 zip file, with the files required to complete this session.</li> </ul> <p>Session 2: Evaluation applying mutation testing with MuCPP</p> <p>In this session, the test cases designed in the first part of this lab will be evaluated based on the mutation adequacy criterion. This will be done by using the <a href="https://ucase.uca.es/mucpp/">MuCPP mutation tool</a>.</p> <p>Files for this session:</p> <ul> <li>VVS-Lab6-S2 pdf file, with the description of this session.</li> <li>Material-S2 zip file, with the files required to complete this session.</li> </ul> <p><em>The source code files family.[cpp|hpp] have been adapted from a listing in [1]. Note that, while considered to be fault free in this lab, these source files are used in other sessions where students are expected to detect some defects in them.</em></p> <p>[1] S. Wiener and L. J. Pinson, The C++ Workbook. USA: Addison-Wesley Longman Publishing Co., Inc., 1990.</p>
Raw and analyzed data for manuscript "Non-thermal plasma deoxidation of copper, chromium and iron surfaces"
<p><strong>Abstract:</strong> Oxide layers on metal surfaces adversely affect processability and material properties in many industrial applications. While several plasma-based approaches for deoxidation were investigated in the past, oftentimes they either work under conditions expensive to create or need a long time for deoxidation. The deoxidation effect of a non-thermal dielectric barrier discharge (DBD) plasma in an Ar/H<sub>2</sub> gas mixture at 100 hPa and 400 °C was investigated on oxidized copper, iron and chromium surfaces. The chemical structure of surfaces before and after the deoxidation procedure was analyzed by X-ray photoelectron spectroscopy (XPS). The results revealed that the metal oxide layers on copper and iron surfaces were almost completely reduced after 10 minutes of plasma treatment, thereby exposing bare metallic surface states. Chromium surface oxides were only partly removed after deoxidation process without notable reduction in oxide layer thickness, whereas the surface compounds changed from Cr(OH)<sub>3</sub> and CrO<sub>3</sub> to mostly Cr<sub>2</sub>O<sub>3</sub>.</p>
Data related to the manuscript "Functional relationships between critical erosion thresholds of fine reservoir sediments and their sedimentological characteristics"
<p>-----------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>Data used in the publication "Functional relationships between critical erosion thresholds of fine reservoir sediments and their sedimentological characteristics", which is accepted by the Journal of Hydraulic Engineering and will be published in a forthcoming issue.</p> <p>Beckers, F., K. Koca, S. Haun, M. Noack, S. U. Gerbersdorf, and S. Wieprecht. Forthcoming. „Functional relationships between critical erosion thresholds of fine reservoir sediments and their sedimentological characteristics.” J. Hydraul. Eng. <a href="https://doi.org/10.1061/(ASCE)HY.1943-7900.00019864">https://doi.org/10.1061/(ASCE)HY.1943-7900.0001984</a></p> <p> </p> <p>The data consists of two files:</p> <ul> <li>GBS.txt contains the sediment data of the reservoir <em>Großer Brombachsee</em></li> <li>SBT.txt contains the sediment data of the reservoir <em>Schwarzenbachtalsperre</em></li> </ul> <p>Both files contain information on the sediment depth and erosion stability separated into τ<sub>c,0</sub> and τ<sub>c,S</sub>.</p> <p>Furthermore, both files contain a collection of physico-chemical sediment parameters, including bulk density, sediment composition (Clay, Silt, Sand), percentiles (d<sub>10</sub>, d<sub>50</sub>, d<sub>90</sub>),cation exchange capacity (CEC), and organic content (TOC).</p> <p>Additionally, the SBT data contains biological sediment parameters, including chlorophyll-a (CHL-a), and extracellular polymeric substances separated into proteins (EPS-p) and carbohydrates (EPS-c).<br> -----------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>The data was collected within the transdisciplinary research project "CHARM - Challenges of Reservoir Management".</p> <p>-----------------------------------------------------------------------------------------------------------------------------------------------------------------</p>
Ultrasonic guided-wave experiment data for manuscript entitled 'A homogenisation scheme for Lamb ultrasound wave dispersion in textilecomposites through multiscale wave and finite element modelling'
<p>This data set contains the ultrasonic guided wave signals (signal amplitudes as a function of time for different sensors) that were generated and recorded using the transducers and controlling instrument in support of the manuscript entitled 'A homogenisation scheme for Lamb ultrasound wave dispersion in textile composites through multiscale wave and finite element modelling'. The controlling software was programmed in MATLAB and that the attached files are in accordance to the .mat file format.</p> <p>The file names follow the notation described below with an example:</p> <p>S1_10kHz_2cyc (illustrated with an example): S1 represents the number of sensors; 10kHz represents the exciting frequency; 2cyc represents the cycle number of input waveform.</p> <p>Details on the experiment setup are provided within an extra file ('Readme' file).</p>
Experimental data in support of manuscript entitled 'A homogenisation scheme for Lamb ultrasound wave dispersion in textile composites through multiscale wave and finite element modelling'
<p>This data set contains the ultrasonic guided wave signals (signal amplitudes as a function of time for different sensors) that were generated and recorded using the transducers and controlling instrument in support of the manuscript entitled 'A homogenisation scheme for Lamb ultrasound wave dispersion in textile composites through multiscale wave and finite element modelling'. The controlling software was programmed in MATLAB and that the attached files are in accordance to the .mat file format.</p> <p>The file names follow the notation described below with an example:</p> <p>S1_10kHz_2cyc (illustrated with an example): S1 represents the number of sensors; 10kHz represents the exciting frequency; 2cyc represents the cycle number of input waveform.</p> <p>Details on the experiment setup are provided within an extra file ('Readme' file).</p>
Supporting dataset for manuscript: "Higher rate of tuberculosis in second generation migrants compared to native residents in a metropolitan setting in Western Europe" (PLoS ONE)
<p>This is the supporting datafile for the manuscript entitled "Higher rate of tuberculosis in second generation migrants compared to native residents in a metropolitan setting in Western Europe" (Marx et al., PLoS ONE). The dataset includes anonymized, routinely collected notification data (variables labeled as "nd") for 314 individuals and anonymized survey data (i.e. data obtained through interviews; variables labeled as "sd") for a subset of 154 individuals. The data are published open-access, in accordance with the PLoS ONE data policy (2014).</p>
hrafsuicidedata: Initial release upon submission of revised manuscript
<p>Data to test the bargaining model vs. the inclusive fitness model of suicidal behavior against the HRAF Probability Sample</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.