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188
datasets available to search
ShareScore release 0.9.0
Dataset results
188 results for “Microbial diversity”
Microbial Diversity of Pancreatic Diseases
ClinicalTrials.gov study NCT03809247. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Microbial Diversity Between Inflamed and Non-inflamed Skin of Patients With Immune Checkpoint Inhibitor-Induced Dermatitis
ClinicalTrials.gov study NCT04812197. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Retrospective Study on Microbial Diversity in Paraffin Tissue of Pancreatic Diseases
ClinicalTrials.gov study NCT05193162. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Isolation and Characterization of Multiple Microbial Species From Diverse Healthy Adults
ClinicalTrials.gov study NCT05150184. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Interleukin-4Ra Blockade by Dupilumab Decreases Staphylococcus Colonization and Increases Microbial Diversity in CRSwNP
ClinicalTrials.gov study NCT05094570. IPD Sharing: NO. Countries: 1. Publications: 0.
Monthly dynamics of microbial functional diversity and composition in a tall-grass prairie, 2012
GEO Series GSE195490. Archaea; Bacteria; Eukaryota; Viruses; uncultured soil bacterium. 96 samples. Type: Other.
Data from: Microbial diversity in the floral nectar of Linaria vulgaris along an urbanization gradient
Open the record for dataset details and reuse information.
The Microbial Gene Diversity along an Elevation Gradient of the Tibetan Grassland
GEO Series GSE48820. uncultured bacterium; Bacteria. 12 samples. Type: Genome variation profiling by array.
Comparison of the microbial diversity of an uncontaminated and a 2,4,6-trinitrotoluene contaminated soil sample
GEO Series GSE3499. unidentified. 6 samples. Type: Other.
The Impact of Environment on Microbial Diversity and Global Transcriptional Responses in the Developing Pig Gut
GEO Series GSE15256. Sus scrofa. 54 samples. Type: Expression profiling by array.
Microbial diversity patterns at three swimming beaches in La Jolla, CA
<p>This dataset contains Illumina MiSeq sequencing reads produced during a community-initiated study of marine microbial diversity in La Jolla, California. The three collection sites, all popular swimming beaches, are notable for their differences in human activity and marine wildlife. 16S V4 rDNA sequencing of planktonic bacteria followed by diversity analysis in Qiime2 showed that La Jolla Cove and the La Jolla Children's Pool have significantly higher OTU diversity than La Jolla Shores. All three sites have distinct taxonomic composition. No evidence of pathogenic bacteria was found. This study is an example of low-budget, community-driven science that uses state-of-the-art DNA sequencing methods to advance our understanding of coastal environments.</p>
Couples and Microbial Diversity
ClinicalTrials.gov study NCT07315568. IPD Sharing: YES. Countries: 0. Publications: 0.
Microbial diversity patterns at three swimming beaches in La Jolla, CA
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Microbial Observatory (ISS-MO): Microbial diversity
The environmental microbiome study was designed to decipher microbial diversity of the International Space Station surfaces in terms of spatial and temporal distributions using 16S and ITS iTag Illumina sequencing. We hypothesized that the microbial population of environmental surfaces changes in time due to astronauts' activity and might be location specific. The environmental samples were collected with the polyester wipes from eight different locations in the ISS during two consecutive sampling sessions (three months apart). The specific objective was to unveil the viable microbial diversity of each location during two separate sessions in terms of abundance and richness of the communities. The International Space Station (ISS) as a closed built environment has its own environmental microbiome which is shaped by microgravity, radiation, and limited human presence. The microbial diversity associated with ISS environmental surfaces was investigated during this study. Polyester wipes and contact slides were used for sampling of eight various surface locations on the ISS at different time periods. The samples were retrieved and analyzed immediately upon the return to the Earth (via Soyuz TMA-14M or Dragon capsule from SpaceX). After surface sample collection, contact slides containing nutrient media for the growth of bacteria and fungi were incubated at 25C. The polyester wipes were processed to measure microbial burden (R2A, Blood Agar, and Potato Dextrose Agar) and recover cultivable bacteria as well as fungi. Subsequently, viable microbial burden was assessed using Adenosine Triphosphate (ATP) assay, and quantitative polymerase chain reaction (PCR) methods after propidium monoazide (PMA) treatment. The 16S-tag and metagenome analyses were used to elucidate viable microbial diversity. The cultivable bacterial population yield from the polyester wipes was very high (5 to 7-logs) when compared with the contact slides (102 to 103 CFU/m2). The PMA-qPCR analysis showed considerable variation of viable bacterial population (105 to 109 16S rDNA gene copies/m2) among locations sampled. Unlike contact slides, polyester wipes cover much larger sample surface (~1 m2) and produce much more reliable results of the microbial diversity of the ISS covering both cultivable and non-cultivable species. The cultivable, total, and viable microbial diversity was determined utilizing state-of-the art molecular techniques. The implementation of the PMA assay before DNA extraction allowed distinguishing viable microorganisms, which is crucial for determining their role to the crew health, the ISS maintenance and the general knowledge of the closed environmentally controlled built systems.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the global transcriptome
GEO Series GSE283495. Mus musculus. 29 samples. Type: Expression profiling by high throughput sequencing.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the single cell transcriptome
GEO Series GSE284074. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
The microbial functional diversity in response to warming incubation at Alaska as characterized by GeoChip
GEO Series GSE89644. Archaea; Bacteria; soil metagenome; Eukaryota; Viruses. 30 samples. Type: Other.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the proximal to distal transcriptome
GEO Series GSE283143. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
The Microbial Gene Diversity along time and space of the wastewater treatment plant
GEO Series GSE92978. Eukaryota; Viruses; uncultured bacterium; Archaea; Bacteria. 48 samples. Type: Other.
Metagenomic analysis revealed higher microbial and functional gene diversities in deep landfill
GEO Series GSE68712. Bacteria. 15 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.