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452 results for “Mitogenomics”
Fig. 2 in Phylogeny of the Hawkmoth Tribe Ambulycini (Lepidoptera: Sphingidae): Mitogenomes from Museum Specimens Resolve Major Relationships
Fig. 2. Maximum Likelihood (ML) topology showing Ambulycini relationships inferred from mitochondrial genome data. Values at nodes indicate SH-aLRT/ Ultrafast Bootstrap/Posterior probabilities. Posterior Probabilities were obtained using Bayesian Inference. ML and Bayesian inferences recovered the same phylogenetic relationships. Scale bar indicates number substitutions per site.Various species are represented by a photograph (indicated with a number behind the species name and next to the respective image). All images are available on the NHM Data Portal (see Table 1), except for 4) B. coquerelii which was taken by Laurel Kaminsky.
Fig. 1 in Phylogeny of the Hawkmoth Tribe Ambulycini (Lepidoptera: Sphingidae): Mitogenomes from Museum Specimens Resolve Major Relationships
Fig. 1. Phylogenetic hypotheses for the hawkmoth tribe Ambulycini. (A) Based on Kawahara and Barber (2015), which used six genes and Maximum Likelihood and Bayesian Inference methods. (B and C) Based on Cardoso (2015), which used 3 genes and 96 morphological characters. For B, Bayesian Inference was used; for C, Maximum Parsimony.
Supplementary material 1 from: Conrado AC, Arruda H, Stanton DWG, James SW, Kille P, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L (2017) The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning. ZooKeys 688: 1-13. https://doi.org/10.3897/zookeys.688.13721
Inferred secondary structure of 22 tRNA genes in the mitochondrial DNA of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata). :
Figure 9 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 9. Observed mismatch distributions and their curve fitted to simulated model of demographic expansion based on the three mitochondrial markers studied: (A) COI, (B) 16S, (C) 12S. Location abbreviations listed in Table 1.
Figure 8 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 8. Contribution of genetic variation of 'among populations' and 'within populations' in A. tibetiana (TIB) and A. sorgeloosi (SOR) by AMOVA test based on the three mitochondrial markers studied (locality abbreviations listed in Table 1).
Figure 7 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 7. Population genetic indices for Tibetan Artemia species based on COI, 16S, and 12S polymorphic loci (location and indices abbreviations listed in Tables 1 and 4, The number of polymorphic sites, total number of mutations, and number of haplotypes are not shown here).
Figure 5 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 5. Heat-map values for overall, within, and between distances based on three mitochondrial markers (location abbreviations listed in Table 1).
Figure 4 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 4. The relationship of haplotype distribution among populations of A. sorgeloosi: (A) COI, (B) 16S, (C) 12S. Location abbreviations listed in Table 1.
Figure 6 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 6. PCA plot based on the within population genetic distances of the three mitochondrial markers (COI, 16S, and 12S) among populations of A. sorgeloosi (location abbreviations listed in Table 1).
Figure 1 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 1. Map of Artemia sampling sites on the Tibetan Plateau (A), Morphology of lakes with more detail (B) (location abbreviations listed in Table 1). Map data © 2022 Google Earth̿.
Figure 2 in Tibetan Artemia (Crustacea: Anostraca) mitogenomic biodiversity and population demographics
Figure 2. COI phylogeny of Asian Artemia based on Bayesian inference (BI) and Maximum-Likelihood (ML). The number behind major nodes denote posterior probabilities. The Bayesian support values (left) and ML bootstrap (right) are shown for each major node. Artemia salina was used as an outgroup. SAL: A. salina, FRA: A. franciscana, SIN: A. sinica, PENTA P.L.: pentaploid parthenogenetic lineage, TETRA P.L.: tetraploid parthenogenetic lineage, URM: A. urmiana, TIB: A. tibetiana, AMA: A. amati, TRI P.L.: triploid parthenogenetic lineage, DI P.L.: diploid parthenogenetic lineage, SOR: A. sorgeloosi (complete information and accession numbers of sequences are available in Table 3 and Supporting Information, Table S1).
Supporting data for: "mtGrasp: Streamlined mitochondrial genome reference-grade assembly and standardization to enhance mitogenome resources and improve the development of environmental DNA assays"
<p>Here, we provide supporting data for the manuscript "mtGrasp: Streamlined mitochondrial genome reference-grade assembly and standardization to enhance mitogenome resources and improve the development of environmental DNA assays".</p> <p>Phylogenetic_analysis.tar.gz contains the script and fasta files used for the phylogenetic analysis, and Mitogenomes.tar.gz contains the mitochondrial sequences utilized that are not publicly available in GenBank.</p>
Fig. 1 Mitochondrial genome structure and genes variability. a in Historical biogeography and mitogenomics of two endemic Mediterranean gorgonians (Holaxonia, Plexauridae)
Fig. 1 Mitochondrial genome structure and genes variability. a Mitogenomes of Paramuricea clavata and Paramuricea macrospina with genome size and gene annotation. GC-content and AT-content are shown in blue and green on the inner and outer surface of the ring, respectively. b Sliding window analysis of the complete mitochondrial genomes of P. clavata and P. macrospina. The black line indicates
Fig. 4 in Turtle and tortoise mitogenomes under contrasting positive selection pressure
Fig. 4 Graphical representation denoting the distribution of PSS in Testudinoidean lineages across the OXPHOS system. All the 12 mitochondrial PCGs encoding the OXPHOS system were projected onto homologous protein structures and are represented in different colours. Grey structures represent the entire OXPHOS complex and no solved crystallized structures were available for the ATP8 gene. The NAD3 gene (lemon green) represents sites under positive selection across all Testudinoidean lineages as detected by random sites analysis. The rest of the genes, NAD1 (hot pink), NAD2 (yellow),
Fig. 2 in Turtle and tortoise mitogenomes under contrasting positive selection pressure
Fig. 2 Gene-wise estimates of dN/dS for the concatenated data set of 12 PCGs using M8a-M8 nested random site models. The y-axis denotes BEB posterior mean estimate of dN/dS for each site, with
Fig. 6 in Whole mitogenomes of Turkish white-toothed shrews, genus Crocidura (Eulipotyphla: Soricidae), with new insights into the phylogenetic positions of Crocidura leucodon and the Crocidura suaveolens group
Fig. 6 Median-joining haplotype network of C. leucodon based on CYTB sequences. Bold indicates Turkish samples in the current study
Fig. 4 in Whole mitogenomes of Turkish white-toothed shrews, genus Crocidura (Eulipotyphla: Soricidae), with new insights into the phylogenetic positions of Crocidura leucodon and the Crocidura suaveolens group
Fig. 4 Median-joining haplotype network of the C. suaveolens group based on CYTB sequences. Bold indicates Turkish samples in the current study
Fig. 2 in Whole mitogenomes of Turkish white-toothed shrews, genus Crocidura (Eulipotyphla: Soricidae), with new insights into the phylogenetic positions of Crocidura leucodon and the Crocidura suaveolens group
Fig. 2 Phylogenetic tree reconstructed using Bayesian analysis of Turkish white-toothed shrews based on mitogenomes minus the D-loop region and the GTR+ G + I model
Fig. 1 in Whole mitogenomes of Turkish white-toothed shrews, genus Crocidura (Eulipotyphla: Soricidae), with new insights into the phylogenetic positions of Crocidura leucodon and the Crocidura suaveolens group
Fig. 1 Graphical maps showing the mitogenomes of three Crocidura species from Turkey: A C. gueldenstaedtii; B C. mimula; C C. leucodon
Fig. 3 in Whole mitogenomes of Turkish white-toothed shrews, genus Crocidura (Eulipotyphla: Soricidae), with new insights into the phylogenetic positions of Crocidura leucodon and the Crocidura suaveolens group
Fig. 3 Phylogenetic tree reconstructed using Bayesian analysis of C. suaveolens group and C. leucodon based CYTB sequences and the HKY+ G + I model. Asterisk indicates Turkish samples in the current study
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.