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373
datasets available to search
ShareScore release 0.7.1
Dataset results
373 results for “Nanopore”
Rapid multiplexed nanopore amplicon sequencing to distinguish Plasmodium falciparum recrudescence from new infection in antimalarial drug trials
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Nanomotif: Identification and Exploitation of DNA Methylation Motifs in Metagenomes using Oxford Nanopore Sequencing
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Code and data from: Influence of heat transfer and wetting angle on condensable fluid flow through nanoporous anodic alumina membranes
<p>Data and matlab code to compute all figures contained in the manuscript submitted to The Journal of Physical Chemistry C.</p>
Datasets used in "Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat"
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Subset of metagenomic nanopore reads
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Source data for 'Photoswitchable nanopores for optical control of transmembrane conductance'
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Supplementary Material. Single laboratory evaluation of the Q20+ nanopore sequencing kit for bacterial outbreak investigations
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TDFPS-Designer: an efficient toolkit for barcode design and selection in nanopore sequencing
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Data from: A novel adenine-based-MOF derived nitrogen-doped nanoporous carbon for flexible solid-state supercapacitor
In this article, we have synthesized a series of nitrogen-doped nanoporous carbon (NPC) from metal organic framework (MOF) of UiO-66 with different ratio of adenine and coated on carbon nanotube film (CNTF) to obtain a flexible porous electrode (NPC/CNTF). It is worth noting that the introduction of adenine at different ratio did not change the structure of UiO-66. We also investigated the effect of carbonization temperature from 800 to 1000 °C on the electrochemical properties of the NPC. The ratio (1, 4-benzendicarboxylate: adenine) 9:1 and the NPC carbonized at 900 °C (noted as NPC-1-900) exhibits better electrochemical properties. The results show that NPC-1-900/CNTF electrode exhibits an exceptionally areal capacitance of 121.5 mF cm-2 than that of PC-900/CNTF electrode (22.8 mF cm-2) at 5 mV s-1 in a three-electrode system, indicating that the incorporation of nitrogen is beneficial to the electrochemical properties of nanoporous carbon. A symmetric flexible solid-state supercapacitor of NPC-1-900/CNTF has also been assembled and tested. Electrochemical date shows that the device exhibited superior areal capacitance (43.2 mF cm-2) at the scan rate of 5 mV s-1, the volumetric energy density is 57.3 µWh cm-3 and the volumetric power density is 2.4 mW cm-3 at the current density of 0.5 mA cm-2 based on PVA/H3PO4 gel electrolyte. For practical application, we have also studied the bending tests of the device, which show that the device exhibits the outstanding mechanical stability under different bending angles. Furthermore, the flexible device shows excellent cyclic stability, which can retain 91.5% of the initial capacitance after 2000 cycles.
DNA breathing initiated DNA parallel circuits with nanopore readout
<p>Fluorescence and nanopore current data are provided here accompanying the publication.</p>
VCF of structural variant calls of Nanopore data aligned to dm6 reference genome
<p>Heterozygous chromosome inversions suppress meiotic crossover (CO) formation within an inversion, potentially because they lead to gross chromosome rearrangements that produce inviable gametes. Interestingly, COs are also severely reduced in regions nearby but outside of inversion breakpoints even though COs in these regions do not result in rearrangements. Our mechanistic understanding of why COs are suppressed outside of inversion breakpoints is limited by a lack of data on the frequency of noncrossover gene conversions (NCOGCs) in these regions. To address this critical gap, we mapped the location and frequency of rare CO and NCOGC events that occurred outside of the <em>dl</em>-<em>49</em> <em>chrX</em> inversion in <em>D</em>. <em>melanogaster</em>. We created full-sibling wildtype and inversion stocks and recovered COs and NCOGCs in the syntenic regions of both stocks, allowing us to directly compare rates and distributions of recombination events. We show that COs are completely suppressed within 500 kb of inversion breakpoints, are severely reduced within 2 Mb of an inversion breakpoint, and increase above wildtype levels 2–4 Mb from the breakpoint. We find that NCOGCs occur evenly throughout the chromosome and, importantly, occur at wild-type levels near inversion breakpoints. We propose a model in which COs are suppressed by inversion breakpoints in a distance-dependent manner through mechanisms that influence DNA double-strand break repair outcome but not double-strand break location or frequency. We suggest that subtle changes in the synaptonemal complex and chromosome pairing might lead to unstable interhomolog interactions during recombination that permits NCOGC formation but not CO formation.</p>
Supporting data for Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater
<p>This dataset contains the FASTQ files used in the paper <em>Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater</em>. </p> <p>The FASTQ files are classified in 2 different folders: MinION and MiSeq. Inside the MinION folder, there are two more folders, one for the R9.4.1 flow cell data and the other for the R10.4.1 flow cell data. </p> <p>Twist synthetic RNA mixtures are named as mix1, mix2, etc. </p> <p>Twist synthetic RNA corresponding to the Wuhan sequence is named as mix11_WH</p> <p>Wastewater samples are named as WWTP_1, WWTP_2, etc. </p>
Nanopore signals corresponding to all negative sample sequences
<p>This dataset contains the nanopore signals of the negative samples in all datasets.</p>
The fourth part of all non-negative sample nanopore signals in dataset D3
<p>The fourth part of all non-negative sample nanopore signals in dataset D3</p>
The third part of all non-negative sample nanopore signals in dataset D3
<p>The third part of all non-negative sample nanopore signals in dataset D3</p>
The second part of all non-negative sample nanopore signals in dataset D3
<p>The second part of all non-negative sample nanopore signals in dataset D3</p>
The NO.8 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)
<p>The NO.8 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)</p>
The NO.9 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)
<p>The NO.9 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)</p>
The NO.7 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)
<p>The NO.7 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)</p>
The NO.1 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)
<p>The NO.1 part of all non-negative sample nanopore signals in dataset D4 ∼ D7 (DB4 ∼ DB7)</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.