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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas
GEO Series GSE111672. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing.
A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [Spatial transcriptomic]
GEO Series GSE161882. Sus scrofa. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomics of 3 H3.3K27M pDMG samples
GEO Series GSE268577. Homo sapiens. 3 samples. Type: Other.
Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissue
GEO Series GSE52525. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium]
GEO Series GSE300007. Homo sapiens. 6 samples. Type: Other.
Spatial transcriptomics data of HS lesional skin and healthy skin
GEO Series GSE249729. Homo sapiens. 3 samples. Type: Other.
Spatial transcriptome uncovers rich coordination of metabolism and signaling in bacterial community (data 2)
GEO Series GSE213531. Escherichia coli K-12. 6 samples. Type: Expression profiling by high throughput sequencing.
Spatially preserved multi-region transcriptomic subtyping and biomarkers of outcome with chemoimmunotherapy in extensive-stage small cell lung cancer [CANTABRICO_DSP cohort]
GEO Series GSE261345. Homo sapiens. 121 samples. Type: Other.
Spatial epigenome-transcriptome co-profiling of mammalian tissues [ATAC-Seq]
GEO Series GSE205052. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Zika virus co-opts miRNA networks to persist in placental microenvironments detected by spatial transcriptomics [visium]
GEO Series GSE205631. Mus musculus. 8 samples. Type: Other.
High-density spatial transcriptomics arrays for in situ tissue profiling
GEO Series GSE130682. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling [human tonsil]
GEO Series GSE188451. Homo sapiens. 49 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomics based characterization of spatial architecture in human multiple primary lung cancer
GEO Series GSE200916. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics reveal lineage complexity of gastric incomplete intestinal metaplasia and its association with gastric cancers [Methyl]
GEO Series GSE295640. Homo sapiens. 32 samples. Type: Methylation profiling by genome tiling array.
The Triptryium wilfordii derivative celastrol has anti-fibrotic effects in systemic sclerosis [Spatial Transcriptomics]
GEO Series GSE226760. Mus musculus. 8 samples. Type: Other.
Xenium data for a comparison of spatial transcriptomics technologies for medulloblastoma cryosections
GEO Series GSE291688. Homo sapiens. 4 samples. Type: Other.
Spatially resolved transcriptomics reveals innervation-responsive functional cluster in skeletal muscle.
GEO Series GSE198596. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics of human brain metastases
GEO Series GSE179572. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-cell and spatial architecture of human tissue granulomas reveals an aberrant immune-regulatory program underlying sarcoidosis [spatial transcriptomics data]
GEO Series GSE192460. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing.
Single-cell and spatial transcriptome analysis revealed the immunomodulatory role of T cells in the colon cancer tumor microenvironment
GEO Series GSE289314. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.