Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
333
datasets available to search
ShareScore release 0.9.0
Dataset results
333 results for “diversity gradients”
Boreal aspen understory diversity along a continental gradient
Open the record for dataset details and reuse information.
Ecological consequences of plant genotypic diversity within a foundation plant, Spartina alterniflora, are pervasive but not universal across multiple stress gradients
Open the record for dataset details and reuse information.
A unifying framework for analyzing temporal changes in functional and taxonomic diversity along disturbance gradients
Open the record for dataset details and reuse information.
Datasets from: Local- and landscape-scale drivers of terrestrial herbaceous plant diversity along a tropical rainfall gradient in Western Ghats, India
Open the record for dataset details and reuse information.
Global biogeography of ant social parasites: Exploring patterns and mechanisms of an inverse latitudinal diversity gradient
Open the record for dataset details and reuse information.
Data from: Latitudinal biodiversity gradients at three levels: linking species richness, population richness, and genetic diversity
Open the record for dataset details and reuse information.
Latitudinal gradient in the intensity of biotic interactions in terrestrial ecosystems: Sources of variation and differences from the diversity gradient revealed by meta-analysis
Open the record for dataset details and reuse information.
Species diversity of fungal endophytes across a stress gradient for plants
<ul> <li>Foliar fungal endophytes are one of the most diverse guilds of symbiotic fungi found in the photosynthetic tissues of every plant lineage, but it is unclear how plant environments and leaf resource availability shape their diversity.</li> <li>We explored correlations between leaf nutrient availability and endophyte diversity among <i>Pinus muricata </i>and <i>Vaccinium ovatum </i>plants growing across a soil nutrient gradient spanning a series of coastal terraces in Mendocino, California.</li> <li>Endophyte richness decreased in plants with higher leaf nitrogen‐to‐phosphorus ratios for both host species, but increased with sodium, which may be toxic to fungi at high concentrations. Isolation frequency, a proxy of fungal biomass, was not significantly predicted by any of the same leaf constituents in the two plant species.</li> <li>We propose that stressed plants can exhibit both low foliar nutrients or high levels of toxic compounds, and that both of these stress responses predict endophyte species richness. Stressful conditions that limit growth of fungi may increase their diversity due to the suppression of otherwise dominating species. Differences between the host species in their endophyte communities may be explained by host specificity, leaf phenology, or microclimates.</li> </ul>
Data from: Using functional and phylogenetic diversity to infer avian community assembly along elevational gradients
<p><strong>Aim </strong>We present the first global analysis of elevational gradients in functional and phylogenetic diversity of birds and test for signals of deterministic processes (i.e., environmental filtering and limiting similarity) in community assembly. Further, we examine for latitudinal effects in the strength of these processes.</p> <p><strong>Location </strong>Forty-six elevational gradients across the globe.</p> <p><strong>Time period </strong>Current (between 1924 and 2016)</p> <p><strong>Major taxa </strong>Birds.</p> <p><strong>Methods </strong>We systematically selected, compiled and analyzed published data on bird diversity along elevational gradients. For each gradient, we calculated functional and phylogenetic diversity across elevations and described the main patterns for each diversity metric. Then, we calculated standardized effect sizes (SES) of each metric and used these SES values to (1) test the signals of deterministic processes shaping assemblages across elevations and (2) to compare changes in within-mountain diversity, among mountains located at different latitudes.</p> <p><strong>Results</strong> Birds displayed eight different patterns of functional and phylogenetic diversity across elevations, but no global pattern of increase or decrease was found. There is, however, a consistent global pattern of phylogenetic clustering, with mountain species being more closely related to each other at any given elevation. Latitude had a significant effect on within-mountain changes in functional and phylogenetic diversity across elevations, with more negative slopes (stronger decline in diversity metrics with increasing elevation) in tropical mountains.</p> <p><strong>Main conclusions</strong> Our findings challenge the idea that the decline of functional and phylogenetic diversity with elevation is a general pattern, emphasizing the uniqueness of each mountain system. In spite of this great variability, we found a latitudinal effect in the patterns of within-mountain functional and phylogenetic dispersion of birds after controlling for effects of species richness. Environmental filtering, thus, may act differently in tropical and temperate mountains, and calls for more comparative studies on the mechanisms driving community assembly at different latitudes.</p>
Spider diversity across an elevation gradient in Área de Conservación Guanacaste (ACG), Costa Rica
<p>Throughout the Neotropics, temperature and precipitation change with elevation and these changes affect the assemblage of species at any particular elevation. We documented the diversity of litter-inhabiting spiders, (Arachnida: Araneae) along a Costa Rican elevational gradient as it relates to covarying abiotic factors such as temperature and precipitation. The spiders we collected were principally unidentifiable juveniles and so we used Barcode Index Numbers (BINs) derived from DNA barcodes as proxies for species-level interim names. We contrasted these taxon-based estimates with phylogenetic measures of alpha and beta diversity derived from both the mitochondrial DNA barcode region and a multi-gene phylogeny of spiders and found that neither the abundance nor the species-richness of spiders was significantly correlated with elevation, temperature or precipitation. However, we did find that spider assemblages in the upper elevation cloud forests were phylogenetically clustered, (and this pattern was unrelated to whether the phylogenetic patterns were derived mitochondrially or from a multi-gene analysis). One standard explanation for such a pattern is that harsh abiotic conditions in higher elevation forests have selected for particular spider lineages however this remains to be tested fully. The diversity of leaf-litter spider species we uncovered was high and further sampling of spider abundance and diversity across the ACG is likely to yield many new species.</p>
Data from: Functional diversity of decomposers modulates litter decomposition affected by plant invasion along a climate gradient
<p>1. Litter decomposition is fundamental to carbon (C) and nutrient cycling in ecosystems, which could be altered by plant invasion. The impacts of plant invasion on litter decomposition are generally predicted by traits difference between leaf litters of invasive and non-invasive species. However, plant invasion not only changes litter composition, but might also increase the activity or change the functional diversity of decomposers to alter litter decomposition, which is barely studied, and the effect could be different under varied climate conditions.</p> <p>2. We studied decomposition of litters from non-invasive and invasive native plants, as affected by litter treatments (in a mixture or alone) and decomposer organisms of different functional groups (by controlling the mesh size of litterbags), in sites with or without an invasive woody grass, Moso bamboo (Phyllostachys edulis), at seven locations across a climate gradient.</p> <p>3. We show that greater decomposer functional diversity, particularly the presence of macrofauna, accelerated the cycling of litter C and nitrogen (N), increased the climatic sensitivities of decomposition rates, but decreased the N use efficiency of decomposers (represented by litter C to N loss ratio). Litter decomposed in mixtures decomposed faster (by 9.5%) and had more N loss (by 28.9%) than that of in monoculture, regardless of the functional diversity of decomposers. In contrast, the invasion of Moso bamboo slowed decomposition and decreased N use efficiency; this negative effect could be reversed when macrofauna was excluded from the decomposition process, which challenges the nutrient facilitation hypothesis. Bamboo invasion depressed the climatic sensitivity of decomposer functional groups when macrofauna was present but not when macrofauna was excluded.</p> <p>4. Synthesis. We found that the functional diversity of decomposer organisms modulates and largely determines litter decomposition affected by a woody grass invasion along a climate gradient. These results suggest that, under current and future climate, including the changes in decomposer functional groups, particularly macrofauna, and their interaction with litter traits, would provide a mechanistic and more reliable prediction on ecosystem functions altered by invaders than a functional trait-based framework.</p>
Data from: Late Cenozoic onset of the latitudinal diversity gradient of North American mammals
The decline of species richness from equator to pole, or latitudinal diversity gradient (LDG), is nearly universal among clades of living organisms, yet whether it was such a pervasive pattern in the geologic past remains uncertain. Here, we calculate the strength of the LDG for terrestrial mammals in North America over the past 65 My, using 27,903 fossil occurrences of Cenozoic terrestrial mammals from western North America downloaded from the Paleobiology Database. Accounting for temporal and spatial variation in sampling, the LDG was substantially weaker than it is today for most of the Cenozoic and the robust modern LDG of North American mammals evolved only over the last 4 My. The strength of the LDG correlates negatively with global temperature, suggesting a role of global climate patterns in the establishment and maintenance of the LDG for North American mammals.
Data from: Patterns of taxonomic and functional diversity of termites along a tropical elevational gradient
Patterns of termite richness along elevation gradients may be related to different responses by termite functional groups to changes in environmental conditions. We investigated the distribution of termite species richness along an elevational gradient of cerrado and rupestrian grasslands in the Espinhaço Mountain Range, in Brazil. Fifty termite species were recorded, with the family Termitidae being dominant; 16 species are endemic to open areas of cerrado and 1 species, Cortaritermes rizzinii, is endemic and restricted to mountaintop grassland habitats. Termite richness declined with increasing elevation, with the main factors associated with the reduction being climactic (air temperature, air and soil humidity, and radiation) and vegetation variables. Different termite communities were found along the elevational gradient, which were also strongly influenced by changes in climate and vegetation. On the other hand, the same functional groups were present at the different elevations, although represented by different species.
Data from: Local coastal configuration rather than latitudinal gradient shape clonal diversity and genetic structure of Phymatolithon calcareum maerl beds in North European Atlantic
Maerl beds are one of the world's key coastal ecosystems and are threatened by human activities and global change. In this study, the genetic diversity and structure of one of the major European maerl-forming species, Phymatolithon calcareum, was studied using eight microsatellite markers. Two sampling scales (global: North East Atlantic and regional: Galicia) were investigated and fifteen maerl beds from Atlantic Europe were sampled. At the regional-scale the location of sites outside and within four estuaries allowed to test for the influence of coastal configuration on population connectivity and genetic diversity. Results suggested that clonal reproduction plays an important role in the population dynamics of P. calcareum maerl beds. Clonality was variable among populations, even within the same region. At the European scale, these differences in clonality cannot be explained by the geographic or latitudinal distribution of the populations studied. A significant genetic differentiation was found among almost all population pairs and a positive correlation between geographic and genetic distances showed the limited dispersal capacity of P. calcareum. Moreover, a very clear pattern of genetic structure was revealed at the regional scale between populations located within and at the mouth of the estuaries. Genetic differentiation among estuaries was less marked for the sites located in outer-zones compared to those located in the inner-zones. In addition, variation in level of clonality linked to seascape was also observed: populations situated in the outer-zones of the estuaries were less clonal than those in the inner-zones. Finally, populations from the same estuary generally shared one or several mutilocus genotypes.
Data from: Drivers of tropical rainforest composition and alpha diversity patterns over a 2,520 m altitudinal gradient
We determined the relationship of forest composition and alpha diversity (species diversity of a local assemblage) to altitude, soil and spatial factors over a 440 - 2950 ma.s.l gradient. Altitudinal gradient on the Atlantic slope of the Talamanca Cordillera, Costa Rica. We measured and identified all stems > 10 cm dbh in 32 0.25-ha undisturbed rain forest plots over the gradient. We determined compositional patterns using Non-Metric Multidimensional Scaling (NMS) ordination, and used linear regressions to explore the relationship between four alpha diversity metrics and altitude. With variation partitioning (VARPART) we determined the compositional variation explained by altitude, soil and spatial variables quantified using Principle Components of Neighbour matrices. We identified 425 species. NMS axis 1 separated a lowland zone (440-1120 m asl) from a transitional one dominated by holarctic Oreomunnea mexicana (1400-1600 m asl) and Quercus-dominated forests at altitudes >2100 m asl. The lowland zone was separated into two clusters of plots on NMS axis 2, the first in the 430-620 m asl range and the second at 1000-1120 masl. . Regressions showed that alpha diversity metrics were strongly negatively related to altitude (R2>0.78). Overall adjusted R2 from VARPART was 0.43, with 0.30, 0.21 and 0.17 for altitude, soil and space respectively. The respective adjusted R2 of individual matrices, on controlling for the other two, were 0.06, 0.05 and 0.09 (p<0.001). There are two well-defined forest compositional zones on this gradient – lowlands and montane forests – with a transitional zone at 1400-1600 m asl where lowland tropical and montane holarctic species are found together. Montane forests are very distinct in their composition and low alpha diversity. Vegetation and soil respond to altitude, and therefore temperature, as an integrated system, a model that goes beyond niche assembly as shown by the significant effect of space in the VARPART.
Liana abundance and diversity increase with rainfall seasonality along a precipitation gradient in Panama
<p>In tropical regions, rainfall gradients often explain the abundance and distribution of plant species. For example, many tree and liana species adapted to seasonal drought are more abundant and diverse in seasonally-dry forests, characterized by long periods of seasonal water deficit. Mean annual precipitation (MAP) is commonly used to explain plant distributions across climate gradients. However, the relationship between MAP and plant distribution is often weak, raising the question of whether other seasonal precipitation patterns better explain plant distributions in seasonally-dry forests. In this study, we examine the relationship between liana abundance and multiple metrics of seasonal and annual rainfall distribution to test the hypothesis that liana density and diversity increase with increasing seasonal drought along a rainfall gradient across the isthmus of Panama. We found that a normalized seasonality index, which combines MAP and the variability of monthly rainfall throughout the year, was a significant predictor of both liana density and species richness, whereas MAP, rainfall seasonality, and the mean dry season precipitation (MDP) were far weaker predictors. The strong response of lianas to the normalized seasonality index indicates that, in addition to the total annual amount of rainfall, how rainfall is distributed throughout the year is an important determinant of the hydrological conditions that favor liana proliferation. Our findings imply that changes in annual rainfall and rainfall seasonality will determine the future distribution and abundance of lianas. Models that aim to predict future plant diversity, distribution, and abundance may need to move beyond MAP to a more detailed understanding of rainfall variability at sub-annual timescales. </p>
Ancient tropical extinctions at high latitudes contributed to the latitudinal diversity gradient
<p class="Style1PCI"><span><span><span><span>Global biodiversity currently peaks at the equator and decreases toward the poles. Growing fossil evidence suggest this hump-shaped latitudinal diversity gradient (LDG) has not been persistent through time, with similar diversity across latitudes flattening out the LDG during past greenhouse periods. However, when and how diversity declined at high latitudes to generate the modern LDG remains an open question. Although diversity-loss scenarios have been proposed, they remain mostly undemonstrated. We outline the 'asymmetric gradient of extinction and dispersal' framework that contextualizes previous ideas behind the LDG under a time-variable scenario. Using phylogenies and fossils of Testudines, Crocodilia and Lepidosauria, we find that the hump-shaped LDG could be explained by (1) disproportionate extinctions of high-latitude tropical-adapted clades when climate transitioned from greenhouse to icehouse, and (2) equator-ward biotic dispersals tracking their climatic preferences when tropical biomes became restricted to the equator. Conversely, equivalent diversification rates across latitudes can account for the formation of an ancient flat LDG. The inclusion of fossils in macroevolutionary studies allows revealing time-dependent extinction rates hardly detectable from phylogenies only. This study underscores that the prevailing evolutionary processes generating the LDG during greenhouses differed from those operating during icehouses.</span></span></span></span></p>
Data from: What can multiple phylogenies say about the latitudinal diversity gradient? A new look at the tropical conservatism, out-of-the-tropics, and diversification rate hypotheses
We reviewed published phylogenies and selected 111 phylogenetic studies representing mammals, birds, insects, and flowering plants. We then mapped the latitudinal range of all taxa to test the relative importance of the tropical conservatism, out of the tropics, and diversification rate hypotheses in generating latitudinal diversity gradients. Most clades originated in the tropics, with diversity peaking in the zone of origin. Transitions of lineages between latitudinal zones occurred at 16–22% of the tree nodes. The most common type of transition was range expansions of tropical lineages to encompass also temperate latitudes. Thus, adaptation to new climatic conditions may not represent a major obstacle for many clades. These results contradict predictions of the tropical conservatism hypothesis (i.e., few clades colonizing extratropical latitudes), but support the out-of-the-tropics model (i.e., tropical originations and subsequent latitudinal range expansions). Our results suggest no difference in diversification between tropical and temperate sister lineages; thus, diversity of tropical clades was not explained by higher diversification rates in this zone. Moreover, lineages with latitudinal stasis diversified more compared to sister lineages entering a new latitudinal zone. This preserved preexisting diversity differences between latitudinal zones and can be considered a new mechanism for why diversity tends to peak in the zone of origin.
Data from: Taxonomic and functional ant diversity along a secondary successional gradient in a tropical forest
The taxonomic diversity (TD) of tropical flora and fauna tends to increase during secondary succession. This increase may be accompanied by changes in functional diversity (FD), although the relationship between TD and FD is not well understood. To explore this relationship, we examined the correlations between the TD and FD of ants and forest age in secondary forests at the α- and β-diversity levels using single- and multi-trait-based approaches. Our objectives were to understand ant diversity patterns and to evaluate the role of secondary forests in the conservation of biodiversity and in the resilience of tropical forests. Ant assemblages were sampled across a chronosequence in the Lacandon region, Mexico. All species were characterized according to 12 functional ecomorphological traits relevant to their feeding behavior. We found that TD and FD were related to forest age at the alpha level, but not at the beta level. α-functional richness and divergence increased linearly with species richness and diversity, respectively. Also, the relationship between taxonomic and functional turnover was linear and positive. Our results indicated that functional traits were complementary across the chronosequence. The increase in FD was mainly driven by the addition of rare species with relevant traits. The older secondary forests did not recover all of the functions of old growth forest but did show a tendency to recovery. Because older successional stages support more TD and FD, we suggest developing agriculture and forestry management practices that facilitate rapid post-agricultural succession and thereby better preserve the functionality of tropical forests.
Data from: Breeding bird species diversity across gradients of land use from forest to agriculture in Europe
Loss, fragmentation and decreasing quality of habitats have been proposed as major threats to biodiversity world-wide, but relatively little is known about biodiversity responses to multiple pressures, particularly at very large spatial scales. We evaluated the relative contributions of four landscape variables (habitat cover, diversity, fragmentation and productivity) in determining different components of avian diversity across Europe. We sampled breeding birds in multiple 1-km2 landscapes, from high forest cover to intensive agricultural land, in eight countries during 2001−02. We predicted that the total diversity would peak at intermediate levels of forest cover and fragmentation, and respond positively to increasing habitat diversity and productivity; forest and open-habitat specialists would show threshold conditions along gradients of forest cover and fragmentation, and respond positively to increasing habitat diversity and productivity; resident species would be more strongly impacted by forest cover and fragmentation than migratory species; and generalists and urban species would show weak responses. Measures of total diversity did not peak at intermediate levels of forest cover or fragmentation. Rarefaction-standardized species richness decreased marginally and linearly with increasing forest cover and increased non-linearly with productivity, whereas all measures increased linearly with increasing fragmentation and landscape diversity. Forest and open-habitat specialists responded approximately linearly to forest cover and also weakly to habitat diversity, fragmentation and productivity. Generalists and urban species responded weakly to the landscape variables, but some groups responded non-linearly to productivity and marginally to habitat diversity. Resident species were not consistently more sensitive than migratory species to any of the landscape variables. These findings are relevant to landscapes with relatively long histories of human land-use, and they highlight that habitat loss, fragmentation and habitat-type diversity must all be considered in land-use planning and landscape modeling of avian communities.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.