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Dataset results
190 results for “molecular barcoding”
Figure 6 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 6 - Best Close Match (BCM) identification of the stripped dataset, e.g. excluding singletons and Urophora (n = 414). Proportions of true positives (TP), false positives (FP), false negatives (FN) and true negatives (TN) are given for 30 arbitrary distance thresholds ranging from 0.15 to 0.00. For each threshold the percentages of precision, accuracy and discarded queries were calculated.
Figure 5 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 5 - Best Close Match (BCM) identification of the entire dataset (n = 555). Proportions of true positives (TP), false positives (FP), false negatives (FN) and true negatives (TN) are given for 30 arbitrary distance thresholds ranging from 0.15 to 0.00. For each threshold the percentages of precision, accuracy and discarded queries were calculated.
Figure 4 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 4 - Identification rates of all five criteria: Neighbour-Joining (NJT) sensu Hebert et al. (2003), revised criteria (NJT_M) according to Meier et al. (2006), and Best Match (BM), Best Close Match (BCM) and All Species Barcodes (ASB) also described by Meier et al. (2006) for four different datasets, including singletons and with (n = 555) or without (n = 452) Urophora, and the same excluding singletons (n = 514) and (n = 414) respectively.
Figure 3 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 3 - Box plots depicting the variation in mean distances using K2P-distance modeling of sequence divergence for intraspecific, interspecific difference among the species and genera, as well as the ingroup genera with the outgroup genus.
Figure 7 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 7 - Relative ID errors at 30 arbitrary threshold values for a. the entire dataset (n = 555), b. the stripped dataset, e.g. excluding singletons and Urophora (n = 414) and c. the stripped dataset excluding the problematic Terellia groups. Linear regression was used to infer the ad hoc threshold for the 95th percentile of the correctly identified queries and the relative ID error does not exceed 5%. In (a) and (b) this value is below 0.00, only in (c) this value is positive: 0.051 (R-square 0.91).
Figure 2 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 2 - The Neighbour-Joining tree of the entire dataset based on COI barcodes. Terminal branches have been collapsed in order to save space, the total number of specimens is given in brackets and the area surface of the triangle represents the amount of variation. When a terminal branch contains two species, both names are provided as well as their respective number of specimens. If a branch contains more than two species only the number of species as well as the number of specimens are given. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 10 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 10 - The Neighbour-Joining tree of the genus Urophora inferred from COI barcodes. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Data from: DNA barcoding meets molecular scatology: short mtDNA sequences for standardized species assignment of carnivore noninvasive samples
Open the record for dataset details and reuse information.
Data from: Molecular diversity of Germany’s freshwater fishes and lampreys assessed by DNA barcoding
Open the record for dataset details and reuse information.
Data from: Delimiting species-poor datasets using single molecular markers: a study of barcode gaps, haplowebs and GMYC
Open the record for dataset details and reuse information.
High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labelling
GEO Series GSE210174. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labelling [bulk RNA-seq]
GEO Series GSE210173. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Arrayed molecular barcoding identifies TNFSF13 as a positive regulator of acute myeloid leukemia-initiating cells
GEO Series GSE104425. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Molecular barcodes and single cell transcriptomics to map graft diversity and lineage of human DA neurons in a rat xenograft model of Parkinson’s Disease
GEO Series GSE200610. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
Clonal and molecular changes in hematopoietic system upon acute platelet depletion revealed using RNA barcoding studies
GEO Series GSE188268. Mus musculus. 3072 samples. Type: Expression profiling by high throughput sequencing.
High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labelling [scRNA-seq]
GEO Series GSE210172. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Digital counting of nucleic acid molecules using random base molecular barcodes
GEO Series GSE94895. synthetic construct. 2 samples. Type: Other.
Figure 1 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 1 - Primer positions within the COI region.
Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics
GEO Series GSE223020. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Precise measurement of molecular phenotypes with barcode-based CRISPRi screens
GEO Series GSE268777. Saccharomyces cerevisiae. 32 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.