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Supplementary material 1 from: Ebinghaus M, Maier W, Wingfield MJ, Begerow D (2018) New host associations and a novel species for the gall-inducing acacia rust genus Ravenelia in South Africa. MycoKeys 43: 1-21. https://doi.org/10.3897/mycokeys.43.25090
Figure S1 : Explanation note: Boxplot of measurements of the six defined teliospore characters of R.evansii. Values were obtained from teliospores derived from seven different host species of in total 18 individual trees. The boxplots are based on mean values calculated for all investigated teliospores for each specimen, respectively.
FIGURE 9 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 9. Bathyconchoecia sp. nov. Atlantic "B" A and B, carapace in lateral and ventral views (detail of Fig. 3 in Angel & Graves 2013: Fig. 3E Bathyconchoecia n. sp. B, redrawn from Angel 2010, Fig. 1); C, scanning electron microscope image of one of the undescribed species of Bathyconchoecia captured during Cruise 0603 of the R.V. Ronald H. Brown. The length of this female specimen is 3.68 mm. Discovery station 9541#18 (from Angel 2010: Fig. 2); D, Bathyconchoecia n. sp. Atlantic 'B' Discovery Station 9541#22 (Fig. 11, G in Angel & Graves 2013).
FIGURE 8 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 8. Schornikovoecia eugenyi sp. nov. Carapace of A-1 juvenile (3.03 mm) in ventral view (St. 223/008-12; see Table).
FIGURE 7 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 7. Schornikovoecia eugenyi sp. nov. (Adult male: A–D, paratype MIMB 18357/4; E, F, paratype MIMB 18357/5). A, mandible; B, masticatory pad of mandible coxale; C, sixth limb; D, precoxal endite of sixth limb; E, caudal furca (claws are broken) and copulatory appendage (without microglass).
FIGURE 6 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 6. Schornikovoecia eugenyi sp. nov. (Adult male: A, B, D–F, H, J, paratype MIMB 18357/4; C, G, I, paratype MIMB 18357/5). A, left valve of carapace in lateral view; B, carapace in ventral view; C, first antenna; D, shaft of first antenna; E, distal part of first antenna; F and G, second and third (clasping organ) segments of endopodites of right and left second antenna; H, another view of right clasping organ (without setae); I, coxal endite of mandible; J, tooth edge and fused tooth lists of coxal endite of mandible.
FIGURE 5 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 5. Schornikovoecia eugenyi sp. nov. (Adult female: A–I, holotype). A, basal segment of fifth limb; B, endopodite of fifth limb; C, endopodite of fifth limb (most setae are not shown, except for the longest one (vestige of the exopodite) on the basal segment and the terminal setae); D, sixth limb; E, precoxal endite of sixth limb; F and G, right and left seventh limbs; H and I, right lamella of caudal furca and part of left one.
FIGURE 4 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 4. Schornikovoecia eugenyi sp. nov. (Adult female: A, B, D–F, holotype; C, paratype MIMB 18357/3). A and B, basal endite of mandible from inside and outside; C and D, coxal endite of mandible; E, maxilla (endites are not shown); F, proximal part of fifth limb.
FIGURE 2 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 2. Schornikovoecia eugenyi sp. nov. (Adult female: SO223/001-11, length 4.0 mm). A, carapace; B, sculpture pattern of carapace.
FIGURE 3 in Schornikovoecia eugenyi, a novel species and genus of deep benthopelagic halocyprids (Ostracoda, Myodocopa) from the North-west Pacific
FIGURE 3. Schornikovoecia eugenyi sp. nov. (Adult female: A, paratype MIMB 18357/2; B–G, holotype). A, right valve of carapace in lateral view; B and C, details of carapace: posterior dorsal corners in interior and exterior views; D, first antenna; E, distal part of first antenna; F, endopodite and first exopodite segment of second antenna; G, distal part of endopodite of second antenna.
FIGURE 2 in Molecular characterization uncovering a novel genus of tapering-filamentous cyanobacteria from Thailand: Phayaothrix lacustris gen. & sp. nov. (Nostocales, Cyanophyta)
FIGURE 2. Bayesian Interference (BI) phylogenetic tree based on 16S rRNA gene sequences. Corresponding posterior probabilities (> 0.50, left) from BI and bootstrap value (> 50%, right) from maximum likelihood (ML) are shown above the branch. The thick branch indicates the strong support values from BI (posterior probabilities> 0.99) and ML (bootstrap value> 99%) analyses. Branch lengths and scale bars represent the nucleotide substitutions per site. Gloeobacter violaceus PCC 7421 was used as an outgroup. The newly determined sequence in this study is in bold. The vertical bar indicates two subclades (P-I and P-II) within the Phayaothrix clade.
FIGURE 1 in Molecular characterization uncovering a novel genus of tapering-filamentous cyanobacteria from Thailand: Phayaothrix lacustris gen. & sp. nov. (Nostocales, Cyanophyta)
FIGURE 1. Morphological variability of Phayaothrix lacustris strain NUACC09 using light microscopy. Scale bar 10 µm. (A–C) heteropolar filament without a hyaline hair at the terminal, (D) old filament showing a hyaline sheath and double intercalary heterocyte, (E–G) twist, coil or loop forming at the terminal and middle regions after cell division, (H–I) knotted growth form and undulating filament, (J–K) young growing filament with single branching (arrow), (L) filament with double branching (arrow), (M–N) heterocytes with senescing heterocytes, (O) second heterocyte forming next to an old terminal cell (arrow), (P–Q) various apical cells developing into heterocyte (arrow), (R) filament showing hormogonia (open square) and necridia (asterisk), (S–T) hormogonia forming heterocytes at one or both sides of terminal cells.
FIGURE 5 in Molecular characterization uncovering a novel genus of tapering-filamentous cyanobacteria from Thailand: Phayaothrix lacustris gen. & sp. nov. (Nostocales, Cyanophyta)
FIGURE 5. Comparison of predicted secondary structures of D1–D1′, V2, Box-B and V3 helix structures from taxa within the Phayaothrix clade for which ITS data are available. Grey highlights indicate dissimilar structures, while pink highlights denote similar structures when compared between our strains (NUACC09 and NUACC10) and other members within the Phayaothrix. Positions of insertions and deletions are shown with filled arrowheads, while different nucleotide are represented by colored letters in comparison with our strains.
FIGURE 4 in Molecular characterization uncovering a novel genus of tapering-filamentous cyanobacteria from Thailand: Phayaothrix lacustris gen. & sp. nov. (Nostocales, Cyanophyta)
FIGURE 4. Bayesian Interference (BI) phylogenetic tree based on 16S rRNA sequences obtained from BEAST. Corresponding posterior probabilities (> 0.50, left) are shown above the branch. Branch lengths and scale bars represent the nucleotide substitutions per site. The vertical bar on the right side of each clade indicates the results of species delimitation analyses: Poisson Tree Processes (PTP)/ its Bayesian implementation (bPTP) based on BI and ML trees, single(s)/multiple(m) thresholds Generalized Mixed Yule Coalescent (GMYC), Automatic Barcode Gap Discovery (ABGD), and Assemble Species by Automatic Partitioning (ASAP). Numbers in the vertical bar show species numbers in each clade.
FIGURE 3 in Molecular characterization uncovering a novel genus of tapering-filamentous cyanobacteria from Thailand: Phayaothrix lacustris gen. & sp. nov. (Nostocales, Cyanophyta)
FIGURE 3. Bayesian Interference (BI) phylogenetic tree based on sequences of 16S–23S rRNA ITS region with tRNA genes. Corresponding posterior probabilities (> 0.50, left) from BI and bootstrap value (> 50%, right) from maximum likelihood (ML) are shown above the branch. The thick branch indicates by the strong support values from BI (posterior probabilities> 0.99) and ML (bootstrap value> 99%) analyses. Branch lengths and scale bars represent the nucleotide substitutions per site. Vertical bars on the right side of each clade indicate the similarity of D1–D1′, V2, Box-B and V3 helix structures, climate zone and habitat. The newly determined sequence in this study is in bold.
FIGURE 1. Phylogenetic relationship between Metarhizium synnematis GZUHXCHL12 in Delimitation of a novel member of genus Metarhizium (Clavicipitaceae) by phylogenetic and network analysis
FIGURE 1. Phylogenetic relationship between Metarhizium synnematis GZUHXCHL12 and its allies based on ITS-5.8S rDNA sequence data. Bootstrap values (1,000 replicates) are indicated above the nodes.
FIGURE 3 in Delimitation of a novel member of genus Metarhizium (Clavicipitaceae) by phylogenetic and network analysis
FIGURE 3. Metarhizium synnematis (holotype) A. Synnema on a lepidopteran cocoon. B. Upper part of a synnema. C. Phialides covering the surface of the synnema in a hymenium with conidia aggregating in sticky masses. D. Phialides. E. Conidia. Scale bars: A = 10 mm, B = 100 μm, C–E = 10 μm.
FIGURE 2 in Delimitation of a novel member of genus Metarhizium (Clavicipitaceae) by phylogenetic and network analysis
FIGURE 2. Minimum spanning network displaying the relationship among Metarhizium synnematis, Neotyphodium sp., Akanthomyces sp. and Metarhizium sp.
FIGURE 2 in Description of a novel coccoid cyanobacterial genus and species Sinocapsa zengkensis gen. nov. sp. nov. (Sinocapsaceae, incertae sedis), with taxonomic notes on genera in Chroococcidiopsidales
FIGURE 2. Transmission electron micrograph of a 2–month–old cultures of the cyanobacterium CHAB 6571 in liquid CT medium. (Cg, cyanophycin granule, Cw, cell wall, Nu, nucleoplasm, Sh, sheath, Th, thylakoids, Os, Outside the colony). Scale bars: A–C, 1 μm, Fig. D–F, 2 μm.
FIGURE 1 in Description of a novel coccoid cyanobacterial genus and species Sinocapsa zengkensis gen. nov. sp. nov. (Sinocapsaceae, incertae sedis), with taxonomic notes on genera in Chroococcidiopsidales
FIGURE 1. Crust samples and Light microscopy of cyanobacterial cultures CHAB 6571. A. The arrow shows the crust samples including cyanobacterium CHAB 6571 from the exposed depression of rough concrete surface. B. The colonial cyanobacterium CHAB 6571 in liquid CT medium. C. CHAB 6571 colonies of different sizes. D. Arrow shows visible chromatoplasm in unicellular cells. E–F. Indian ink background staining of unicellular cells and colonies. G. Unicellular cells of 4–month–old. H. Golden or colorless sheath with hollows of CHAB 6571. I. Colonies of 6–month–old. All scale bars: 10 μm.
FIGURE 1 in Introducing Massarioramusculicola, a novel genus in Massariaceae
FIGURE 1. Phylogram generated from maximum likelihood tree from analysis of LSU sequence data of species in Massariaceae and Delitschiaceae. Bootstrap support values greater than 60% are given above or below the nodes. Culture accession numbers are mentioned along with the species name and the tree is rooted to Zopfia rhizophila. Ex-type and ex-epitype sequences are in black bold.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.