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501 results for “phylogenetic taxonomy”
FIGURE 4 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 4. (A) Dorsal and (B) ventral views of the skull of Rondonops biscutatus (CHUNB 23454). Scale bar = 1 mm.
FIGURE 8 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 8. (A) View of a flooded forest near Igarapé-Açu, right bank of Rio Abacaxis, Nova Olinda do Norte, Amazonas Brazil; (B) terra firme forest at Igarapé-Açu; (C) holotype of Rondonops xanthomystax in life. (D) Closer view of the same specimen.
FIGURE 3 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 3. (A) Sulcate, (B) lateral and (C) asulcate faces of the right hemipenis of Rondonops biscutatus (CHUNB 18738).
FIGURE 7 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 7. Rondonops xanthomystax, holotype, MZUSP 98085, adult female, SVL 67 mm. (A) Lateral view of head; (B) ventral view of the head; (C) dorsal view of the head.
FIGURE 6 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 6. Geographic distribution of Rondonops biscutatus (triangles) and R. xanthomystax (circles). 1,2: Borba and Nova Olinda do Norte, 3: Novo Progresso, 4: Alta Floresta, 5: Guajará-Mirim, 6: Pimenta Bueno, 7: Alta Floresta d'Oeste, 8: Cerejeiras, 9: Itaituba, 10: Jacareacanga. AM: Amazonas, MT: Mato Grosso, PA: Pará, RO: Rondônia.
FIGURE 1 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 1. Rondonops biscutatus, holotype, CHUNB 18739, adult male, SVL 56 mm. (A) Dorsal view of head; (B) lateral view of the head; (C) ventral view of the head; (D) precloacal plate and femoral pores at each side.
FIGURE 10 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 10. Maximum likelihood topology for the DNA-only dataset. The parsimony bootstrap values are shown above the branches or horizontal line; these values apply to this particular tree and do not indicate that the parsimony analysis supported these nodes most strongly. The Bayesian posterior probabilities are shown below branches. Asterisks represent bootstrap values of 100% or Bayesian posterior probabilities of 1. The dots refer to the names of the higher taxa.
FIGURE 5 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 5. (A) Right hand, (B) hyoid, (C) right foot, (D) pectoral, and (E) pelvic girdles of Rondonops biscutatus (CHUNB 23454). Scale bars = 1 mm.
FIGURE 9 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 9. Bayesian phylogenies of the combined DNA and morphology dataset (left) and the morphological dataset only (right). The parsimony bootstrap values are shown above the branches or horizontal line; these values apply to this particular tree and do not indicate that the parsimony analysis supported these nodes most strongly. The Bayesian posterior probabilities are shown below the branches or horizontal line. In the tree on the right, the polytomies were formed by collapsing those nodes with <50% posterior probability. The dots refer to the names of the higher taxa.
FIGURE 2 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 2. (A) Flooded forest in Alta Floresta d'Oeste, Rondônia, Brazil, depicting termite nests on tree trunks, used as shelter by Rondonops biscutatus during the wet season. (B) Flooded forest in Cerejeiras, Rondônia, Brazil, during the dry season, depicting array of pitfall traps with drift fences, used to capture R. biscutatus. (C) Rondonops biscutatus, adult female. (D) Rondonops biscutatus, adult male.
Fig. 10 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 10. Morphological comparison of Gibbocarina galeata comb. nov. (previously Nebela galeata) and Mrabella subcarinata gen. nov., comb. nov. (previously Quadrulella subcarinata). (a) line drawing of Gibbocarina galeata from Congo by Gauthier-Lièvre (1957). (b and c) scanning and light micrographs of M. subcarinata from South Africa. Scale bars = 50 µm (a) and 20 µm (b).
Fig. 3 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 3. Light micrographs of barcoded Quadrulella symmetrica s.s. cells: (a) cell Q-75; (b) cell Q-83; (c) cell Q-81; (d) cell Q-90; (e) cell Q-63; (f) cell Q-73; (g) cell Q-51; (h) cell Q-102; (i) cell Q-100; (j) cell Q-95; (k) cell Q-82; (l) cell Q-51. Scale bars = 10 µm.
Fig. 4 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 4. Light micrographs of two Quadrulella madibai sp. nov. barcoded cells: (a) cell Q-11; (b) cell Q-9. Scale bars = 10 µm.
Fig. 7 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 7. Light micrographs of three barcoded Mrabella subcarinata cells (previously known as Quadrulella subcarinata): (a) cell Q-1; (b) cell Q-2; (c) cell Q- 16. Scale bars = 20 µm (in a and b) and 50 µm (in c).
Fig. 6 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 6. Light micrographs of barcoded Quadrulella alata cells: (a) cell Q-8; (b) cell Q-7; (c) cell Q-17; (d) cell Q-15. Scale bars = 20 µm (in a and b) and 50 µm (in c and d).
Fig. 5 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 5. Light (a) and scanning electron (b) micrographs of Quadrulella quadrigera from Australia. Image (a) has been stacked with Combine ZP. Scale bars = 40 µm.
Fig. 2 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 2. Light micrographs of barcoded Quadrulella variabilis sp. nov. cells: (a) cell Q-54; (b) cell Q-48; (c) cell Q-52; (d) cell Q-101; (e) cell Q-98; (f) cell Q-53. Scale bars = 10 µm.
Fig. 9 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 9. Maximum likelihood bootstrap consensus tree of 34 Quadrulella COI sequences and 71 other hyalosphenid sequences based on a 684- nucleotide position alignment. The numbers along the branches represent respectively the bootstrap values obtained by maximum-likelihood analysis, posterior probability values obtain by Bayesian analysis and parsimony scores obtain by maximum parsimony analysis. Only values above 50/0.50/50 are shown. The tree is rooted with the Padaungiella–Alocodera group. The scale bar corresponds to the mean number of nucleotide substitutions per site on the respective branch.
Fig. 8 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 8. Scanning electron micrographs illustrating morphological variations within the Quadrulella cf. symmetrica morphospecies. (a) Q. cf. symmetrica_BG from Bulgaria; (b) Q. cf. symmetrica_CA from Canada; (c) Q. cf. symmetrica_CH from Switzerland; (d) Q. variabilis with a long neck (ex: Q. longicollis) from Bulgaria. Scale bars = 20 µm. Image from Kosakyan et al. (2012) with permission from the editor.
FIGURE 22 in Integrative taxonomy reveals cryptic diversity in neotropical grasshoppers: taxonomy, phylogenetics, and evolution of the genus Sphenarium Charpentier, 1842 (Orthoptera: Pyrgomorphidae)
FIGURE 22. Male genital structures of S. totonacum sp.n. holotype (A–C), S. adelinae sp.n. holotype (D–F); and S. miztecum sp.n. holotype (G–I). For all taxa left squares show epiphallus (I) and ectophallus (II) in dorsal view, and endophallus in lateral view (III); meddle squares show ectophallus in posterior view; and right squares show a close up of ectophallus in lateral view (Scale bars = 1mm).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.