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271
datasets available to search
ShareScore release 0.9.0
Dataset results
271 results for “scATAC”
Single-cell chromatin accessibility data from K562 cells using scATAC-seq
GEO Series GSE99172. Homo sapiens. 288 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
scATAC-seq of human dermal fibroblasts reprogrammed with MGT
GEO Series GSE183121. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_scATAC]
GEO Series GSE115211. Homo sapiens. 96 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [scATAC-Seq]
GEO Series GSE232002. Homo sapiens. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin accessibility map of rice root tips at single-cell resolution [scATAC-seq]
GEO Series GSE214131. Oryza sativa. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
YAP/TAZ activity in PDGFRa-expressing alveolar fibroblasts modulates lung fibroblast-epithelial cell crosstalk through Wnt4 [scATAC-seq]
GEO Series GSE291640. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Construction of cynomolgus monkey cell atlas by scATAC seq and scRNA seq
<p>In this study, we tried to create a cellular transcriptome map of cynomolgus monkeys at the single-cell level. The cell landscape covers major organs including adipose, aorta, bladder, breast, colon, heart, kidney, liver, lung, muscle, spleen, stomach, testis, tongue, trachea and uterus. We also perform an integrative analysis of scRNA-seq and scATAC-seq of several organs to define transcriptional and epigenetic changes in cynomolgus monkey. Importantly, we have compared the differences in cell maps of human, mouse and monkey, we hope to provide sufficient information about primates for subsequent preclinical experiments.</p>
Annotated genomic regions for scATAC-seq module of the scPipe Bioconductor package.
<p>Contains annotated genomic regions of interest for the scATAC-seq module of the scPipe Bioconductor package.</p>
Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse [scATAC-seq]
GEO Series GSE168667. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Effects of TCF-1 de-repression on heterogeneity of chromatin states in memory and effector cells following acute infecton [scATAC-seq]
GEO Series GSE295247. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
BCG vaccination impacts the epigenetic landscape of progenitor cells in human bone marrow (scATAC-Seq)
GEO Series GSE248720. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors [scATAC-seq]
GEO Series GSE211087. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Reduced TBX5 dosage causes human atrial disease by undermining developmental gene regulation of atrial cardiomyocyte identity [scATAC-seq]
GEO Series GSE285168. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A Lactate-induced SREBF2-dependent genetic program drives an immunotolerant dendritic cell population during cancer progression [scATAC-seq]
GEO Series GSE253589. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Developmental trajectory of pre-hematopoietic stem cell formation from endothelium (scATAC-seq data set)
GEO Series GSE137115. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing (scATAC-Seq)
GEO Series GSE234574. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multi-omics gene regulatory network analysis of resting and stimulated PBMCs [scATAC-seq]
GEO Series GSE178428. Homo sapiens. 42 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Enhancer grammar of liver cell types and hepatocyte zonation states [scATAC-seq]
GEO Series GSE218467. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell genomics improves the discovery of risk variants and genes of Atrial Fibrillation [scATAC-seq]
GEO Series GSE224996. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell ATAC-seq analysis of hESCs undergoing neuronal differentiation [scATAC-seq]
GEO Series GSE192856. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.