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1,079 results for “source data”
Source data for "Glacial isostatic adjustment directed incision of the Channeled Scabland by ice-age megafloods"
<p>The data provided in this repository is the source data for "Glacial isostatic adjustment directed incision of the Channeled Scabland by ice-age megafloods". This repository contains three directories for ANUGA simulations on (1) present-day topography, (2) glacial isostatic adjustment-corrected topography at 18 ka, and (3) glacial isostatic adjustment-corrected topography at 15.5 ka. Each directory includes hydrodynamic modeling data and topographic reconstruction data. This repository also contains MATLAB scripts for analyzing simulated discharge and shear stress values for replicating plots.</p> <p>Cite as: Pico. T., David, S.R., Larsen, I.J, Mix, A., Lehnigk, K., Lamb, M.P., Glacial isostatic adjustment directed incision of the Channeled Scabland by ice-age megafloods, PNAS, 2022.</p> <p> </p> <p><br> </p>
Data related to article 'Thawing Yedoma permafrost is a neglected nitrous oxide source'
<p>Data on nitrous oxide (N<sub>2</sub>O) fluxes with related process, soil and microbial data from two thawing Yedoma exposures in Northeast Siberia.</p> <p>Metadata:</p> <p>Study site 1:Kurungnakh<br> Location 1:N 72°20', E 126°17'</p> <p>Study site 2:Duvanny Yar<br> Location 2:68°38' N, 159°09' E</p> <p>Contact:Maija Marushchak (maija.marushchak@uef.fi); Christina Biasi (christina.biasi@uef.fi)</p> <p>Ecosystem type:Yedoma exposure; retrogressive permafrost thaw slump</p> <p>Duration:July 2016, July 2017</p> <p>Data creation date:1 September 2021</p> <p>File origin:Created at University of Eastern Finland/University of Jyväskylä by Maija Marushchak (maija.marushchak@uef.fi)<br> Data policy:Kindly inform Maija Marushchak and Christina Biasi if you are going to use the data and of any publication plans.<br> If they think that they should be acknowledged or offered participation as authors they will let you know.</p> <p>Questions about this file should be addressed to Maija Marushchak (maija.marushchak@uef.fi).</p> <p> </p>
Text-fig. 4. Bivariate plots of the upper teeth (M2 – P3) of small to medium sized Miocene hyaenodonts from African localities. Data source: Pilgrim (1912, 1914, 1932), Colbert (1935), Savage (1965), Barry (1988), Morales et al. (1998a, 2007), Holroyd (1999), Rasmussen et al. (2009), Borths et al. (2016), Borths and Seiffert (2017). in New Hyaenodonts (Ferae, Mammalia) From The Early Miocene Of Napak (Uganda), Koru (Kenya) And Grillental (Namibia)
Text-fig. 4. Bivariate plots of the upper teeth (M2 – P3) of small to medium sized Miocene hyaenodonts from African localities. Data source: Pilgrim (1912, 1914, 1932), Colbert (1935), Savage (1965), Barry (1988), Morales et al. (1998a, 2007), Holroyd (1999), Rasmussen et al. (2009), Borths et al. (2016), Borths and Seiffert (2017).
Text-fig. 3. Bivariate plots of the lower teeth (m3 – m2) of small to medium sized Miocene hyaenodonts from African localities. Data source: Pilgrim (1912, 1932), Colbert (1935), Savage (1965), Barry (1988), Morales et al. (1998a, 2003, 2007, 2008, 2010), Holroyd (1999), Morlo et al. (2007), Rasmussen et al. (2009), Borths et al. (2016), Borths and Seiffert (2017). in New Hyaenodonts (Ferae, Mammalia) From The Early Miocene Of Napak (Uganda), Koru (Kenya) And Grillental (Namibia)
Text-fig. 3. Bivariate plots of the lower teeth (m3 – m2) of small to medium sized Miocene hyaenodonts from African localities. Data source: Pilgrim (1912, 1932), Colbert (1935), Savage (1965), Barry (1988), Morales et al. (1998a, 2003, 2007, 2008, 2010), Holroyd (1999), Morlo et al. (2007), Rasmussen et al. (2009), Borths et al. (2016), Borths and Seiffert (2017).
Text-fig. 7. Bivariate plots of the upper teeth (M2, M1, P4) and lower teeth (m3, m2, p4) of large Miocene hyaenodonts from Eurasian and African localities. Data source: Stromer (1926), Savage (1965), Barry (1988), Ginsburg (1999), Holroyd (1999), Morales et al. (2003, 2007, 2008, 2010), Morlo et al. (2007), Rasmussen and Gutiérrez (2009), Borths et al. (2016). in New Hyaenodonts (Ferae, Mammalia) From The Early Miocene Of Napak (Uganda), Koru (Kenya) And Grillental (Namibia)
Text-fig. 7. Bivariate plots of the upper teeth (M2, M1, P4) and lower teeth (m3, m2, p4) of large Miocene hyaenodonts from Eurasian and African localities. Data source: Stromer (1926), Savage (1965), Barry (1988), Ginsburg (1999), Holroyd (1999), Morales et al. (2003, 2007, 2008, 2010), Morlo et al. (2007), Rasmussen and Gutiérrez (2009), Borths et al. (2016).
Upslope migration of snow avalanches in a warming climate: data and model source files
<p>Complete data and model source files corresponding to:</p> <p>Giacona, F., Eckert, N., Corona, C., Mainieri, R., Morin, S., Stoffel, M., Martin, B., Naaim, M. (2021). Upslope migration of snow avalanches in a warming climate. Proceedings of the National Academy of Sciences America, Nov 2021, 118 (44) e2107306118; DOI: 10.1073/pnas.2107306118</p>
Source data for "Conformer-specific polar cycloaddition of dibromobutadiene with trapped propene ions"
<p>Experimental primary data and calculated molecular structures for the publication "Conformer-specific polar cycloaddition of dibromobutadiene with trapped propene ions” </p>
Open data source for "Optically reconfigurable quasi-phase-matching in silicon nitride microresonators"
<p>The folder includes includes the raw data as well as codes that were used for generation of all Figures in the paper "Optically reconfigurable quasi-phase-matching in silicon nitride microresonators".</p>
Code & Data from: Development of a low cost open-source ultrasonic device for plant height measurements
<p>We here provide code and data for the study "Development of a low cost open-source ultrasonic device for plant height measurements"</p> <p>Code:<br> - Arduino code (management of the electronic circuit): "Arduino_ultrasonic_sensor.ino"<br> - OpenSCAD code (3D-printing): "3DShells_ultrasonic_sensor.scad"<br> - R code (statistical analysis of field test): "Statistical_analysis.R"</p> <p>Data:<br> - "manual_vs_sensor_controlled.csv": this file contains the comparison between the ultrasonic device and the ruler in standardized laboratory conditions. It has three columns: "manual_value", the height value measured manually; "sensor_value", the height value obtained from the ultrasonic device; "height_range", the interval to which the height value belongs (we worked with 25 cm intervals).<br> - "manual_vs_ruler_field.csv": this file contains the comparison between the ultrasonic device and the ruler in field conditions. Plant height measurements were performed on 26 sorghum genotypes. The file has four columns: "Genotype", the id of the measured genotype; "rep" the replicate (3 plants were measured for each genotype); "manual_value", the height value measured manually; "sensor_value", the height value obtained from the ultrasonic device. When using the ruler, the operator spent 15 min and 23 s to complete all measurements in the field, and 3 min and 27 s to enter all data manually in a digital file. When using the sensor, the operator spent 10 min and 52 s to complete all measurements in the field, and manual transcription was not needed since all measurements are instantaneously saved on an SD card.</p> <p>More details on the experimental data can be found in the article "Development of a low cost open-source ultrasonic device for plant height measurements".</p> <p>We also provide a tutorial to explain how to build the ultrasonic-sensor ("tutorial.docx")</p>
CaImAn: An open source tool for scalable Calcium Imaging data Analysis
<p>Advances in fluorescence microscopy enable monitoring larger brain areas <em>in-vivo</em> with finer time resolution. The resulting data rates require reproducible analysis pipelines that are reliable, fully automated, and scalable to datasets generated over the course of months. We present CaImAn, an open-source library for calcium imaging data analysis. CaImAn provides automatic and scalable methods to address problems common to preprocessing, including motion correction, neural activity identification, and registration across different sessions of data collection. It does this while requiring minimal user intervention, with good scalability on computers ranging from laptops to high-performance computing clusters. CaImAn is suitable for two-photon and one-photon imaging, and also enables real-time analysis on streaming data.</p> <p>To benchmark the performance of CaImAn we collected and combined a corpus of manual annotations from multiple labelers on nine mouse two-photon datasets, that are contained in this open access repository. We demonstrate that CaImAn achieves near-human performance in detecting locations of active neurons.</p> <p>In order to reproduce the results of the paper or download the annotations and the raw movies, please refer to the readme.md at:</p> <p>https://github.com/flatironinstitute/CaImAn/blob/master/use_cases/eLife_scripts/README.md</p> <p> </p>
Dataset for "Open access books through open data sources: Assessing prevalence, providers, and preservation"
<p>This dataset contains the raw collected data reported on in the manuscript titled "Open access books through open data sources: Assessing prevalence, providers, and preservation" which is available here: https://doi.org/10.5281/zenodo.7305490</p> <p>One file contains the results of the digital object identifier queries, and the other data on which publication records were found to be included in which of the studied bibliometric data sources, and preservation services.</p> <p>The author is grateful to Alicia Wise and Ronald Snijder for assisting in the identification of available datasets and valuable feedback throughout the study.</p> <p>This research was commissioned by CLOCKSS, DOAB, and OAPEN.</p>
Data and Source codes: Light alters activity but do not disturb tandem coordination of termite mating pairs
<p>This repository provides access to the tracking data and analysis code used for the manuscript</p> <p>Light alters activity but does not disturb tandem coordination of termite mating pairs</p> <p>by Nobuaki Mizumoto and Thomas Bourguignon</p> <p>Okinawa Institute of Science & Technology Graduate University, Onna-son, Okinawa, Japan</p> <p>published in the Ecological Entomology.<br> </p>
Source data for the publication "SiGe quantum wells with oscillating Ge concentrations for quantum dot qubits"
<p>This repository contains data reported in the figures of the publication "SiGe quantum wells with oscillating Ge concentrations for quantum dot qubits."</p>
Data and materials for "The Consequences of Data Dispersion in Genomics: A Comparative Analysis of Data Sources for Precision Medicine" manuscript"
<p>Data and sripts for the "The Consequences of Data Dispersion in Genomics: A Comparative Analysis of Data Sources for Precision Medicine" manuscript" manuscript, sent to BMC Bioinformatics</p>
Source Data for "Phosphorescent extensophores expose elastic nonuniformity in polymer networks"
<p>This source data is for the manuscript "Phosphorescent extensophores expose elastic nonuniformity in polymer networks".</p>
Digivet data sources inventory
<p>An inventory of data sources to be used in the Digivet case studies, along with project documentation that gives them context. FAIRer datasets, in which context and data are stored in linked formats will be produced in next steps of the project, and also published in the Digivet community.</p>
Data for "A large gas-phase source of esters and other accretion products in the atmosphere"
<p>The data used in the preparation of the manuscript "A large gas-phase source of esters and other accretion products in the atmosphere". The data set includes the full mass spectra of all of the isotope labelled experiments show in the Fig. 3 of the manuscript (MS_data.zip), and the files for the quantum chemical calculations throughout the manuscript (Final-QC-out.zip).</p>
Inverse Design of Nanophotonic Solid-State Quantum Emitter Single-photon Sources: Data
<p>Data regarding the results presented in the paper "Inverse Design of Nanophotonic Solid-State Quantum Emitter Single-photon Sources".</p>
Data and source code for "Spherical Air Mass Factors in One and Two Dimensions with SASKTRAN 1.6.0"
<p>Supplementary data for "Spherical Air Mass Factors in One and Two Dimensions with SASKTRAN 1.6.0":</p> <ul> <li>source: source code and data required to reproduce all figures</li> <li>amf-tables: data in NETCDF4 format for the air mass factor tables discussed in Section 5, which were used in the following publications by Griffin et al.: <ul> <li>"High-Resolution Mapping of Nitrogen Dioxide With TROPOMI: First Results and Validation Over the Canadian Oil Sands" (2018, <a href="https://doi.org/10.1029/2018GL081095">https://doi.org/10.1029/2018GL081095</a>)</li> <li>"Biomass burning nitrogen dioxide emissions derived from space with TROPOMI: methodology and validation" (2021, <a href="https://doi.org/10.5194/amt-2021-223">https://doi.org/10.5194/amt-2021-223</a>)</li> </ul> </li> </ul>
Large-eddy simulation source code and data for (LS)2D reference publication in JAMES.
<p>This archive contains the MicroHH large-eddy simulation source code, the (LS)2D source code, and all simulation input and statistics, used for the publication:</p> <p><em>"The Benefits and Challenges of Downscaling a Global Reanalysis with Doubly-Periodic Large-Eddy Simulations" </em>by B.J.H. van Stratum et al.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.