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◂Fig. 4 A molecular tree of 51 systematically representative Peridiniaceae, including all 28 accessions assignable to P. volzii. Maximum Likelihood tree (–ln = 22,017.62), as inferred from a rRNA nucleotide alignment (1,129 parsimony-informative sites) and with strain number information. Numbers on branches are ML bootstrap (above) and Bayesian support values (below) for the clusters (asterisks indicate maximal support values, values under 50 and 0.90, respectively, are not shown). Clades are indicated (abbreviations: HET, Heterocapsaceae; PPE, Protoperidiniaceae) in Morphological and molecular variability of Peridinium volzii Lemmerm. (Peridiniaceae, Dinophyceae) and its relevance for infraspecific taxonomy
◂Fig. 4 A molecular tree of 51 systematically representative Peridiniaceae, including all 28 accessions assignable to P. volzii. Maximum Likelihood tree (–ln = 22,017.62), as inferred from a rRNA nucleotide alignment (1,129 parsimony-informative sites) and with strain number information. Numbers on branches are ML bootstrap (above) and Bayesian support values (below) for the clusters (asterisks indicate maximal support values, values under 50 and 0.90, respectively, are not shown). Clades are indicated (abbreviations: HET, Heterocapsaceae; PPE, Protoperidiniaceae)
Fig. 2 in Lethal and sub-lethal effects of Beauveria bassiana (Cordycipitaceae) strain NI8 on Chrysoperla rufilabris (Neuroptera: Chrysopidae)
Fig. 2. Cumulative mortality of Chrysoperla rufilabris females at 3, 5, and 10 d exposed to Beauveria bassiana strain NI8 at different concentrations (spores per mm2) under laboratory conditions. Insects were fed with a Lygus species solid diet afer being sprayed with fungus. Columns within the group labeled with a different letter were significant different at P = 0.05 (Tukey Honest Significant Difference test).
Рис. 2. ТеΛо гусеницы непарного шеΛкопряΑа, погибшей от вируса яΑерного по- ΛиэΑроза. Фото Δ. Куренщикова Fig. 2. The corpse of a gypsy moth caterpillar that died from the nuclear polyhedrosis virus. Photo by D. Kurenshchikov in Sensitivity of caterpillars of the gypsy moth (Lymantria dispar, Erebidae) from the South of Khabarovsk Territory to various strains of nuclear polyhedrosis virus
Рис. 2. ТеΛо гусеницы непарного шеΛкопряΑа, погибшей от вируса яΑерного по- ΛиэΑроза. Фото Δ. Куренщикова Fig. 2. The corpse of a gypsy moth caterpillar that died from the nuclear polyhedrosis virus. Photo by D. Kurenshchikov
Рис. 1. ГнезΑо гусениц непарного шеΛкопряΑа в кроне Αерева. Фото Δ. Куренщикова Fig. 1. The nest of gypsy moth caterpillars in the tree crown. Photo by D. Kurenshchikov in Sensitivity of caterpillars of the gypsy moth (Lymantria dispar, Erebidae) from the South of Khabarovsk Territory to various strains of nuclear polyhedrosis virus
Рис. 1. ГнезΑо гусениц непарного шеΛкопряΑа в кроне Αерева. Фото Δ. Куренщикова Fig. 1. The nest of gypsy moth caterpillars in the tree crown. Photo by D. Kurenshchikov
Рис. 3. Снижение чисΛенности гусениц при возΑействии разΛичных географических штаммов ВЯП. СтоΛбцы: коΛичество погибших во время эксперимента гусениц поΑ опреΑеΛенной инфекционной нагрузкой. ПоказатеΛи (в процентах) привеΑены в Λевой части табΛицы. СтреΛки: минимаΛьное и максимаΛьное коΛичество погибших во время очереΑного учета гусениц и крестообразные маркеры: среΑнее коΛичество погибших во время очереΑного учета гусениц. ПоказатеΛи (в абсоΛютных значениях) в правой части табΛицы. По горизонтаΛи: номер титра, от боΛьшего к меньшему Fig. 3. Decrease in the number of caterpillars under the influence of various geographical strains of NPV. Columns: number of caterpillars killed during the experiment under a certain infectious load. Indicators (in percent) are shown on the left side of the table. Arrows: the minimum and maximum number of deaths during the next track count and cross markers: the average number of deaths during the next track count. Indicators (in absolute values) on the right side of the table. Horizontal: titre, from highest to lowest in Sensitivity of caterpillars of the gypsy moth (Lymantria dispar, Erebidae) from the South of Khabarovsk Territory to various strains of nuclear polyhedrosis virus
Рис. 3. Снижение чисΛенности гусениц при возΑействии разΛичных географических штаммов ВЯП. СтоΛбцы: коΛичество погибших во время эксперимента гусениц поΑ опреΑеΛенной инфекционной нагрузкой. ПоказатеΛи (в процентах) привеΑены в Λевой части табΛицы. СтреΛки: минимаΛьное и максимаΛьное коΛичество погибших во время очереΑного учета гусениц и крестообразные маркеры: среΑнее коΛичество погибших во время очереΑного учета гусениц. ПоказатеΛи (в абсоΛютных значениях) в правой части табΛицы. По горизонтаΛи: номер титра, от боΛьшего к меньшему Fig. 3. Decrease in the number of caterpillars under the influence of various geographical strains of NPV. Columns: number of caterpillars killed during the experiment under a certain infectious load. Indicators (in percent) are shown on the left side of the table. Arrows: the minimum and maximum number of deaths during the next track count and cross markers: the average number of deaths during the next track count. Indicators (in absolute values) on the right side of the table. Horizontal: titre, from highest to lowest
Fig. 1 in Effect of Mexican Hirsutella citriformis (Hypocreales: Ophiocordycipitaceae) strains on Diaphorina citri (Hemiptera: Liviidae) and the predators Chrysoperla rufilabris (Neuroptera: Chrysopidae) and Hippodamia convergens (Coleoptera: Coccinellidae)
Fig. 1. Overall mean mortality of Diaphorina citri adults caused by conidia of 8 Hirsutella citriformis strains applied by contact (3 separate bioassays) under controlled conditions (26 ± 1 °C, 76 ± 4% RH, 16:8 h L:D photoperiod). Error bars represent the standard error (n = 7).
Fig. 3 in Effect of Mexican Hirsutella citriformis (Hypocreales: Ophiocordycipitaceae) strains on Diaphorina citri (Hemiptera: Liviidae) and the predators Chrysoperla rufilabris (Neuroptera: Chrysopidae) and Hippodamia convergens (Coleoptera: Coccinellidae)
Fig. 3. Mean mortality of Diaphorina citri caused by blastospores of 5 Hirsutella citriformis strains under controlled conditions (26 ± 1 °C, 76 ± 4% RH, 16:8 h L:D photoperiod) during 26 d post inoculation. Different letters indicate significant differences (Tukey's test, α = 0.05). Error bars represent the standard error (n = 7).
Fig. 3 in Mating compatibility and competitiveness between wild and laboratory strains of Eldana saccharina (Lepidoptera: Pyralidae) afer radiation treatment
Fig. 3. The mean number of Eldana saccharina matings in a pair-wise comparison between non-irradiated laboratory adults and irradiated laboratory adults showing a significant 2-way interaction between time of night and location of trials. Data were pooled across the entire observation period to obtain total matings irrespective of cross type. Error bars denote 95% confidence limits.
Fig. 4 in Mating compatibility and competitiveness between wild and laboratory strains of Eldana saccharina (Lepidoptera: Pyralidae) afer radiation treatment
Fig. 4. The mean number of matings in a pair-wise comparison between irradiated laboratory reared and non-irradiated wild Eldana saccharina adults showing a significant 3-way interaction across time of night, type of cross and location of trials. The expected possible mating combinations/cross types were: (i) irradiated laboratory female and irradiated laboratory male (Sf x Sm); (ii) irradiated laboratory female and non-irradiated wild male (Sf x Wm); (iii) non-irradiated wild female and irradiated laboratory male (Wf x Sm); and/or (iv) non-irradiated wild female and non-irradiated wild male (Wf x Wm).
Fig. 2 in Mating compatibility and competitiveness between wild and laboratory strains of Eldana saccharina (Lepidoptera: Pyralidae) afer radiation treatment
Fig. 2. The mean number of matings in a pair-wise comparison between non-irradiated and irradiated laboratory reared Eldana saccharina adults. The expected possible mating combinations were: (i) non-irradiated laboratory female and non-irradiated laboratory male (Lf x Lm); (ii) non-irradiated laboratory female and irradiated laboratory male (Lf x Sm); (iii) irradiated laboratory female and non-irradiated laboratory male (Sf x Lm); and/or (iv) irradiated laboratory female and irradiated laboratory male (Sf x Sm).
Fig. 1 in Mating compatibility and competitiveness between wild and laboratory strains of Eldana saccharina (Lepidoptera: Pyralidae) afer radiation treatment
Fig. 1. The mean number of matings in a pair-wise comparison between non-irradiated laboratory and wild Eldana saccharina adults showing a significant 3-way interaction across time of night, type of cross and location of trials. The expected possible mating combinations were: (i) non-irradiated laboratory female and nonirradiated laboratory male (Lf x Lm); (ii) non-irradiated laboratory female and non-irradiated wild male (Lf x Wm); (iii) non-irradiated wild female and non-irradiated laboratory male (Wf x Lm); and/or (iv) non-irradiated wild female and non-irradiated wild male (Wf x Wm).
Fig. 1 in Characterization of Bacillus thuringiensis (Bacillaceae) strains pathogenic to Myzus persicae (Hemiptera: Aphididae)
Fig. 1. Protein profiles of the strains virulent to Myzus persicae. Lane 1: GP640, Lane 2: GP399, Lane 3: GP238, Lane 4: GP322, Lane 5: GP139, Lane 6: GP762, Lane 7: GP339, Lane 8: GP300, Lane 9: HD1, Lane 10: GP402, Lane 11: GP382, Lane 12: GP528, Lane 13: GP782, Lane 14: GP209, Lane 15: GP777, Lane 16: GP778, Lane 17: GP60, Lane 18: GP780.
Fig. 1 in Toxoplasma gondii in four captive kangaroos (Macropus spp.) in China: Isolation of a strain of a new genotype from an eastern grey kangaroo (Macropus giganteus)
Fig. 1. Toxoplasma gondii cysts in kangaroos or mice. A. Toxoplasma gondii cysts in the diaphragm of case 2 kangaroo, H&E. B. Toxoplasma gondii cysts in the tongue of case 2 kangaroo, H&E. C. Toxoplasma gondii cysts in the diaphragm of case 2 kangaroo, IHC. D. Toxoplasma gondii cysts in the tongue of case 2 kangaroo, IHC. E. Toxoplasma gondii-like cysts in the myocardium of case 4 kangaroo, squashed section, unstained. F. Many TgRooCHn1 Toxoplasma gondii cysts were observed in the mouse brain, 27 DPI, squashed section, unstained. Bar = 50 μm.
OBR-strain- and temperature-data of curing epoxy in moulds of different length
<p>These files contain the data/software that was obtained/used in a research project using an<br> Optical Backscatter Reflectometer (OBR) to obtain strain data of curing epoxy.</p> <p>Moulds of different length's were filled with liquid epoxy. In the middle of the epoxy, along the<br> longest axis of the mould, the optical fibre sensed the strain acting upon the fibre due to the<br> volume shrinkage.</p> <p>Additionally temperature probes were used to monitore the temperature in the epoxy.<br> For the 40 cm and the 60 cm experiments these probes were arranged along the fibre, for the<br> other experiments the probes were distributed randomly in the epoxy.</p> <p>Two Differential Scanning Calorimetry experiments were performed with temperature programs like the mean temperature of the 10 cm and the 60 cm curing experiments.</p> <p><br> See "001_Explanation of the data.txt" for a detailed description of the data.<br> Please, see the "*.txt"-files in the respective subfolders for additional information.</p> <p>ATTENTION: The archives that contain the raw-measurement files are several GB big. It may take a while to open these.</p> <p>The results are to be published and the journal/article-title will be added as soon as possible.</p> <p>The software is published under the GNU General Public License, version 3.<br> For the data the stated license is valid.</p>
Reciprocal F1 hybrids of two inbred mouse strains reveal parent-of-origin and perinatal diet effects on behavior and expression
<p>Raw data and statistical analyses from an experiment to study parent-of-origin and diet-by-parent-of-origin effects on expression and behavior. </p> <p>In this experiment, female NOD/ShiLtJ x C57Bl/6J and C57Bl/6J x NOD/ShiLtJ mice were exposed in utero to one of four diets. After weaning, their whole-brain gene expression, as well as a set of behaviors that model psychiatric disease, were recorded and analyzed.</p> <p>File_S1_README contains detailed descriptions of all included files.</p>
Photos of the barcoded strains from the UK-Barcoding
<p>This project (Kelly et al., 2018), funded by the Environment Agency, England’s environmental regulator, aimed to develop a DNA metabarcoding approach to ecological assessment based on diatoms using HTS of a fragment of the <em>rbc</em>L gene. It aimed to ensure continuity with microscopical methods while, at the same time, complying with the EU Water Framework Directive, which refers to ‘taxonomic composition’. The twin foundations for this study were a calibration dataset of samples, analyzed by both microscopy and HTS approaches, along with a reference database of <em>rbc</em>L DNA barcodes which link to Linnaean taxonomy.</p> <p>You can find in this zip file a selection of photos of the diatom strains isolated in the framework of the project UK-barcoding. This project was funded by the UK Environment Agency</p> <p> </p> <p>Reference :</p> <p>Kelly, M. G., N. Boonham, S. Juggins, P. Kille, D. G. Mann, D. Pass, D. Sapp, S. Sato, & R. Glover, 2016. A DNA based diatom metabarcoding approach for Water Framework Directive classification of rivers. Bristol, UK: 1–94.</p> <p> </p>
SNP genotypes for 524 wild mice and selected laboratory strains
<p>SNP genotypes from the Mouse Universal Genotyping Array for 524 wild mice and 12 selected laboratory strains. Data are provided in PLINK binary format (*.bed/*.bim/*.fam files) with an accompanying sample manifest (comma-separated text.)</p>
Monolayer doping of silicon-germanium alloys: A balancing act between phosphorus incorporation and strain relaxation
<p>This paper presents the application of monolayer doping (MLD) to silicon-germanium (SiGe). This study was carried out for phosphorus dopants on wafers of epitaxially grown thin films of strained SiGe on silicon with varying concentrations of Ge (18%, 30%, and 60%). The challenge presented here is achieving dopant incorporation while minimizing strain relaxation. The impact of high temperature annealing on the formation of defects due to strain relaxation of these layers was qualitatively monitored by cross-sectional transmission electron microscopy and atomic force microscopy prior to choosing an anneal temperature for the MLD drive-in. Though the bulk SiGe wafers provided are stated to have 18%, 30%, and 60% Ge in the epitaxial SiGe layers, it does not necessarily mean that the surface stoichiometry is the same, and this may impact the reaction conditions. X-ray photoelectron spectroscopy (XPS) and angle-resolved XPS were carried out to compare the bulk and surface stoichiometry of SiGe to allow tailoring of the reaction conditions for chemical functionalization. Finally, dopant profiling was carried out by secondary ion mass spectrometry to determine the impurity concentrations achieved by MLD. It is evident from the results that phosphorus incorporation decreases for increasing mole fraction of Ge, when the rapid thermal annealing temperature is a fixed amount below the melting temperature of each alloy.</p>
Proteome of the Ceratopteris richardii fern (strain Hn-n)
<p>Proteome derived from de novo transcriptome assembly from fronds, mature gametophytes and spores of Ceratopteris richardii Hn-n strain. Transcriptome is deposited at <a href="https://www.ebi.ac.uk/ena/data/view/PRJEB33372">https://www.ebi.ac.uk/ena/data/view/PRJEB33372</a></p> <p>After removing low-quality reads (reads lacking all four nucleotides or with a no-call), we assembled transcripts with Velvet (version 1.2.06) and Oases (version 0.2.06) using each of five k-mer values (k=45, 55, 65, 75, 85). Also, we converted the .fastq file to a non-redundant .fasta file and performed separate de novo transcriptome assembly with k=35, 45, 55, 65, and 75. Assembled transcripts were combined for each tissue, then redundant or fragmented sequences were removed based on BLASTN analysis. We determined the translational reading frame and corresponding peptide sequences from each assembled transcript based on BLASTP mapping results (after 6-frame translation in silico) to four plant reference proteome databases (Creinhardtii_169, Osativa_193_pep, Smoellendorffii_91_pep, TAIR10). Sequences lacking significant BLASTP scores to the reference proteomes were considered to be non-coding and omitted from the resulting fern proteome database. The resulting protein sequences derived from the three tissues were combined and a non-redundant protein sequence set computed based on clustering with UCLUST (version 4.2.66), requiring >97% amino acid identity. The supporting code is available from the NuevoTx repository (https://github.com/taejoonlab/NuevoTx). </p> <p>This proteome was assembled for "A pan-plant protein complex map reveals deep conservation and novel assemblies"</p> <p> </p> <p> </p>
Fig. 5 in Molecular Identification of a Phage-infected Protochlamydia Strain Naturally Harboured by Non-Encysting Naegleria
Fig. 5. Detail of electron microscopy of Naegleria clarki infected by Pcb, showing three enlarged RBs containing filled and empty phages. A normal-size wrinkled EB is also visible. Scale bar: 0.5 µm.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.