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Supplementary material 2 from: Belluardo F, Quirós DD, Lobón-Rovira J, Rosa GM, Rasoazanany M, Andreone F, Crottini A (2021) Uncovering the herpetological diversity of small forest fragments in south-eastern Madagascar (Haute Matsiatra). Zoosystematics and Evolution 97(2): 315-343. https://doi.org/10.3897/zse.97.63936
Table S2. Amplified genes, primers and PCR conditions used in this study
Supplementary material 7 from: Belluardo F, Quirós DD, Lobón-Rovira J, Rosa GM, Rasoazanany M, Andreone F, Crottini A (2021) Uncovering the herpetological diversity of small forest fragments in south-eastern Madagascar (Haute Matsiatra). Zoosystematics and Evolution 97(2): 315-343. https://doi.org/10.3897/zse.97.63936
Figure S1. Amphibians Neighbor joining tree of the 16S rRNA gene 3' terminus
Scholastic Theology [IO Islamic 450] Annotations on شرح المواقف [fragment]
<ul> <li><strong>Scholastic Theology.</strong></li> <li><strong>This manuscript is now IO Islamic 1812 </strong><strong>in the India Office collections.</strong></li> <li><strong>[metadata:</strong><a href="https://de.wikipedia.org/wiki/Otto_Loth"> <strong>Otto Loth, </strong></a><strong><em><a href="http://doi.org/10.5281/zenodo.3923636">A Catalogue of the Arabic Manuscripts in the Library of the India Office</a></em>, (volume 1), no. 450 here with further notations and hyperlinks]</strong>.</li> </ul> <p>450.</p> <p>1812. Size 11 in. by 6<sup>1/2</sup> in.; foll. 187. Twenty-one lines in a page.</p> <p>Another copy of the Annotations of <a href="http://www.worldcat.org/identities/lccn-n86140758/">SIYÂLKÛTÎ</a>, extending nearly to the end of the second موقف. The concluding portion is wanting.</p> <p>Written in Nasta’liḳ. Red lines round the pages. Injured by damp and by insects.</p> <p>Foll. 74-83 should be placed in the following order:</p> <p>74, 76, 79, 77, 78, 81, 82, 80, 75, 83; fol. 148 should come after 140; and foll. 181-7 should stand thus: 181, 187, 184, 182, 183, 185, 186.</p> <p>[<a href="http://doi.org/10.5281/zenodo.4085990">Johnson</a>.]</p> <p> </p> <p> </p>
Data from: Changes in aspects of emergent and submerged vegetation cover, richness, and diversity in a fragmenting marsh system
<p><span><span><span><span><span><span><span><span><span><span><span>Habitat fragmentation is a global environmental challenge, and the marshes of southeastern Louisiana are a hotspot for habitat fragmentation. Evaluating marsh ecosystems during the transition from intact to fragmented is critical to predict future changes and inform effective conservation and restoration plans. We sampled three sites in Terrebonne Basin, Louisiana to characterize a fragmenting emergent-vegetation dominated system, investigate the relationship between plant species richness and diversity and marsh fragmentation, and determine the relationship between marsh fragmentation and cover of submerged aquatic vegetation (SAV). Emergent plant richness and diversity were higher in areas with low salinity and high surface elevation. Although these areas had relatively low fragmentation, there was no direct relationship between richness or diversity and measures of marsh fragmentation. Despite greater light availability in highly fragmented areas, SAV was restricted to areas with low fragmentation, suggesting light availability was not the factor limiting SAV colonization into open water areas. Results from this study highlight the complex interactions of geomorphological and biotic processes within a fragmenting marsh and suggest that physical drivers such as salinity and elevation are a better indicator of emergent plant community structure in this system than degree of fragmentation. </span></span></span></span></span></span></span></span></span></span></span></p>
β diversity among ant communities on fragmented habitat islands: the roles of species trait, phylogeny and abundance
<p class="MsoCommentText">Habitat loss and fragmentation reduce biodiversity and alter species composition in local communities. β diversity describes the variation in species composition between or among communities in fragmented landscapes and has two components: species turnover and nestedness. In this study, we assessed β diversity of ant assemblages on 24 island fragments in the Thousand Island Lake, China. We constructed a species-level phylogenetic tree and measured five morphological traits of all ant species captured. We then assessed taxonomic (both incidence-based and abundance-weighted), functional, and phylogenetic β diversity and partitioned β diversity into turnover and nestedness (as well as the contributions of particular species and particular islands). Finally, we examined the relationships between β diversity and a suite of geographical variables (i.e., difference in island area, difference in isolation and inter-island distance) using Mantel tests. We found taxonomic and phylogenetic turnover components dominated overall β diversity whereas the functional turnover and nestedness components contributed equally to overall β diversity. Overall β diversity increased with increasing differences in isolation and inter-island distance, however, only abundance-weighted overall β diversity decreased with increasing differences in island size. Our results indicate that species that were abundant on large islands were also abundant on small islands. We conclude that dispersal limitation of ants likely shapes the pattern of β-diversity along isolation and inter-island distance gradients. Additionally, functional redundancy of species (i.e., different species share similar functional roles) could also explain β-diversity patterns among fragmented habitat islands. Our results highlight the necessity of incorporating both incidence-based and abundance-weighted community data when examining β diversity in fragmented landscapes. By partitioning β diversity into the contributions of particular species and particular fragments, our study implies that small patches can be valuable for maintaining biodiversity among ant communities.</p>
Figure 1 in Effects of fragmentation on genetic variation in populations of the terrestrial earthworm Drawida japonica Michaelsen, 1892 (Oligochaeta, Moniligastridae) in Shandong and Liaodong peninsulas, China
Figure 1. Map of collection sites in Shandong (SD) and Liaodong (LD) peninsulas of China.
Figure 2 in Nest-site microhabitat association of red-billed leiothrix in subtropical fragmented forest in central China: evidence for a reverse edge effect on nest predation risk?
Figure 2. Nest sites of red-billed leiothrix (a) in the forest and (b) in the scrub-grassland.
Figure 5 in The social wasps (Hymenoptera: Vespidae: Polistinae) of a fragment of Atlantic Forest in southern Bahia, Brazil
Figure 5. Number of wasps collected at different times of the day in the three fragments.
Figure 1 in The social wasps (Hymenoptera: Vespidae: Polistinae) of a fragment of Atlantic Forest in southern Bahia, Brazil
Figure 1. Location of the Michelin Ecological Reserve (MER).
Figure 3 in The social wasps (Hymenoptera: Vespidae: Polistinae) of a fragment of Atlantic Forest in southern Bahia, Brazil
Figure 3. Dendrogram of similarity among wasp surveys carried out in the Atlantic Forest.
Figure 2 in The social wasps (Hymenoptera: Vespidae: Polistinae) of a fragment of Atlantic Forest in southern Bahia, Brazil
Figure 2. Location of the transects carried out in the Atlantic Forest.
"A theoretical model of Surtseyan bomb fragmentation" code and data
<p>This is Matlab code and permeability and porosity data to accompany the manuscript "A theoretical model of Surtseyan bomb fragmentation", which is accepted for publication in the Proceedings of the Royal Society London, Series A, and for which a preprint will be deposited in arXiv.</p>
Fig. 8 in A comparative exploration of the inquiline and prey species of Nepenthes rafflesiana pitchers in contiguous and fragmented habitat patches in Singapore
Fig. 8. First and second (a) and second and third (b) dimensions of the three-dimensional NMDS of pitcher prey assemblages. Points represent prey assemblages of individual pitchers, being coloured according to pitcher type (with green points representing lower pitchers and beige ones representing upper ones) and are filled for pitchers found within the Central Catchment Nature Reserve (CCNR) and unfilled for those outside of it. Texts denote prey taxon centroids and are sized proportionally with the frequency of occurrence of the taxa they denote. Points found close to species centroids are more likely to contain the corresponding prey taxon. Stress = 0.174.
FIG. 2. — Palatal fragment with P3 in Unexpected finding of a new Equus species (Mammalia, Perissodactyla) belonging to a supposedly extinct subgenus in late Pleistocene deposits of Khakassia (southwestern Siberia)
FIG. 2. — Palatal fragment with P3/-M1/ of both sides (IAES 21), holotype of Equus (S.) ovodovi n. sp., Proskuriakova Cave (Khakassia, Southwestern Siberia). Scale bar: 3 cm.
Text-fig. 5. Fossils of some mammalian taxa from Gánovce-Hrádok Neanderthal site. a) Castor fiber – mandible dext. et sin. with incisors and p4 – m3 in lateral (mandible) and occlusal (cheek teeth) views (OF 6664–6665); b) Ursus ex gr. spelaeus – right mandible fragment with m1 – m3 in lateral view (P-unnumbered); c) Coelodonta antiquitatis – p2 sin. in buccal view (OF 7188); d) Equus sp. I (cf. taubachensis) – P3 – M3 dext. in travertine, buccal view (P-14302); e) Equus sp. II (cf. germanicus) – Mt sin. fragment in anterior view (OF unnumbered); f) Alces alces – left maxilla fragment with M1 – M3 in occlusal view (P-14303); g) Mammuthus primigenius – m2 sin. in occlusal view (P-14312); h) Palaeoloxodon antiquus – palate fragment with M3 dext. et sin. in occlusal view (P-14281). 50 mm scale is for a–c, 100 mm scale is for d–h. in Revised Floral And Faunal Assemblages From Late Pleistocene Deposits Of The Gánovce-Hrádok Neanderthal Site -Biostratigraphic And Palaeoecological Implications
Text-fig. 5. Fossils of some mammalian taxa from Gánovce-Hrádok Neanderthal site. a) Castor fiber – mandible dext. et sin. with incisors and p4 – m3 in lateral (mandible) and occlusal (cheek teeth) views (OF 6664–6665); b) Ursus ex gr. spelaeus – right mandible fragment with m1 – m3 in lateral view (P-unnumbered); c) Coelodonta antiquitatis – p2 sin. in buccal view (OF 7188); d) Equus sp. I (cf. taubachensis) – P3 – M3 dext. in travertine, buccal view (P-14302); e) Equus sp. II (cf. germanicus) – Mt sin. fragment in anterior view (OF unnumbered); f) Alces alces – left maxilla fragment with M1 – M3 in occlusal view (P-14303); g) Mammuthus primigenius – m2 sin. in occlusal view (P-14312); h) Palaeoloxodon antiquus – palate fragment with M3 dext. et sin. in occlusal view (P-14281). 50 mm scale is for a–c, 100 mm scale is for d–h.
Habitat fragmentation and logging affects the occurrence of the lesser mouse deer in tropical forest reserves
<p>Due to rapid urbanization, logging, and agricultural expansion, forest fragmentation is negatively affecting native wildlife populations throughout the tropics. <span>This study examined the effects of landscape and habitat characteristics on the lesser </span>mouse deer, <i>Tragulus kanchil,</i><span> populations in Peninsular Malaysia. A total of 315 camera traps were deployed in eight forest reserves. This study provides critical ecological information for managing and conserving understudied populations of <i>T. kanchil</i>. We found that the detection of <i>T. kanchil </i>was attributed to forest fragmentation.<i> </i>Forest patches had the detection of <i>T. kanchil</i> four times greater than continuous forests<i>. </i>The detection of <i>T. kanchil</i> was nearly three times higher in the peat swamp forest compared to the lowland dipterocarp forests. Surprisingly, the detection of <i>T. kanchil</i> was almost twice lower in the unlogged forests compared to logged forests. The detection of <i>T. kanchil</i> increased with the presence of trees, particularly those with DBH of 5 cm to 45 cm, canopy cover, number of saplings</span> <span>and palms, number of dead fallen trees, and distance from nearest roads. However, detection decreased with a greater number of trees with a DBH greater than 45 cm and higher elevation. We recommend that conservation stakeholders take the necessary steps to support the conservation of mouse deer species and its natural habitats regardless of whether these forests are fragmented or continuous. These steps include eradicating poaching, habitat degradation, and further deforestation.</span></p>
Figure 1 from: Diniz F, Silva G, Souza B, Pereira F, Lopes M, Valente S (2014) New molecular evidence for fragmentation between two distant populations of the threatened stingless bee Melipona subnitida Ducke (Hymenoptera, Apidae, Meliponini). Journal of Hymenoptera Research 38: 1-9. https://doi.org/10.3897/jhr.38.7302
Figure 1 - A Sampling sites of Melipona subnitida: NAT (coordinates: 5°48'04"S, 35°11'08"W; State of Rio Grande do Norte) and PAR (coordinates: 2°46'39"S, 41°51'59"W; on the border of the States of Piauí and Maranhão) B Clustering analysis using UPGMA for Melipona subnitida genotypes included in this study based on DICE similarity coefficient values. Numbers indicate bootstrap values for nodes retained by more than 50% of bootstrap replicates (1000 replications) C Scatter-plot of the principal coordinate analysis (PCoA) using ISSR loci. ■ PAR genotypes; ● NAT genotypes D Bar plot from Inferred population structure of using the Bayesian grouping admixture model-based program STRUCTURE (K = 2).
Figure 3 from: Tajovsky K, Hosek J, Hofmeister J, Wytwer J (2012) Assemblages of terrestrial isopods (Isopoda, Oniscidea) in a fragmented forest landscape in Central Europe. ZooKeys 176: 189-198. https://doi.org/10.3897/zookeys.176.2296
Figure 3 - A triplot of the RDA block analyses of terrestrial isopod assemblages at the sites studied. For the abbreviations of the species see Table 1, FA – fragment area, C/N – carbon-nitrogen ratio, Ca2+ – calcium content of the soil, pHH2O – soil acidity. TO, MOH, TOH, AO, BO, BOH, MDF, DP and CP – vegetation at the different sites, see text.
Figure 2 from: Tajovsky K, Hosek J, Hofmeister J, Wytwer J (2012) Assemblages of terrestrial isopods (Isopoda, Oniscidea) in a fragmented forest landscape in Central Europe. ZooKeys 176: 189-198. https://doi.org/10.3897/zookeys.176.2296
Figure 2 - Epigeic activity (columns) (total catch per 5 traps per year) and numbers of species (white squares) of isopods at the sites studied in the different fragments of woodland.
Figure 1 from: Tajovsky K, Hosek J, Hofmeister J, Wytwer J (2012) Assemblages of terrestrial isopods (Isopoda, Oniscidea) in a fragmented forest landscape in Central Europe. ZooKeys 176: 189-198. https://doi.org/10.3897/zookeys.176.2296
Figure 1 - Total population densities (ind.m-2 ± SE) (columns) and numbers of species (white squares) in the isopod assemblages at the sites sampled in the different fragments of woodland.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.