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FIGURE 9 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 9. Maximum-likelihood tree (using GTR + I model, bootstrap=1000) of Mesogastrura species based on COI gene. Node values represent likelihood bootstrap value.
FIGURE 8 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 8. Mesogastrura seotalensis sp. nov.; a. Front leg of new species; b–f: Front leg, Middle leg, Hind leg, Ventral tube and Furca of M. ojcoviensis (Stach, 1919), respectively. Scale bar: 0.0025 mm. Arrows mark tenent hairs.
FIGURE 5 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 5. Mesogastrura seotalensis sp. nov.; a. Eyes of new species; b. Eyes of M. ojcoviensis (after Stach, 1919); c. Eyes of M. boneti (after Tarsia in Curia, 1941); d. Labral chaetotaxy (The arrow indicate apical chaetae); e. Maxillary outer lobe. Scale bar: 0.0025 mm.
FIGURE 2 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 2. Three caves entrance and guano sampling point inside of each caves: a. Entrance of Jangamgul cave; b. Guano sampling point of Jangamgul cave; c. 3rd entrance of Manjanggul cave; d. Guano sampling point of Manjanggul cave; e. Entrance of Seotaloreumjinjidonggul cave; f. Guano sampling point of Seotaloreumjinjidonggul cave.
FIGURE 4 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 4. Mesogastrura seotalensis sp. nov.; a. Antennal segment I to IV; b. Apical part of Ant. IV, ventral side and c. dorsal side. Scale bar: 0.05 mm.
FIGURE 3 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 3. Mesogastrura seotalensis sp. nov.; a. Chaetotaxy of head to Abd.V, dorsal view; b. Habitus of new species and c. M. ojcoviensis (Stach, 1919) in ethanol. Scale bar: 0.2 mm.
Supplementary material 1 from: Zhao Y, Wang H, Huang H, Zhou Z (2022) A DNA barcode library for katydids, cave crickets, and leaf-rolling crickets (Tettigoniidae, Rhaphidophoridae and Gryllacrididae) from Zhejiang Province, China. ZooKeys 1123: 147-171. https://doi.org/10.3897/zookeys.1123.86704
List of species of the family Tettigoniidae, Rhaphidophoridae, and Gryllacrididae in Zhejiang Province, China
Figure 3 in DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea: Palaemonidae)
Figure 3. (a) Log egg number vs log carapace length (CL) in Paratypton siebenrocki; (b) box plot showing the egg volume of early and late stage embryos.
Figure 1 in DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea: Palaemonidae)
Figure 1. Ex situ images of Paratypton siebenrocki (RMNH.Crus.D.54440): (A) ovigerous female and (B) male. Dwelling morphology of P. siebenrocki. (C) Dwelling in Acropora arabensis from Farasan Islands (Red Sea) with ventilation pores, host of the specimens shown in a and b; and (D) Acropora cf. verweyi fragment in REEFolution nursery in Kenya, arrow indicates dwelling. Photos (a, b) by Arthur Anker, (c) by Jessica Bouwmeester, (d) by Susanne Bähr.
Figure 2 in DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea: Palaemonidae)
Figure 2. Phylogeny reconstruction based on 16S and COI mtDNA. Paratypton siebenrocki (in bold) does not show a clear clustering with Anapontonia or Metapontonia in this reduced dataset from Horká et al. (2016). Topology is based on Maximum Likelihood (ML) analyses, support values are ML (UFBoot) on the left and Bayesian Inference (BI) on the right. Only values ≥ 90 are shown; – represents a value below this threshold.
FIGURE 5 in First record of Archanara neurica (Hübner, 1808) from the Iberian Peninsula (Lepidoptera: Noctuidae) according to DNA barcoding and internal male genitalia
FIGURE 5. Neighbour-Joining tree (K2P; constructed with MEGA6; COI 5'> 600 bp) including 142 sequences of selected Archanara, Lenisa and Globia rooted with Denticucullus pygmina and Coenobia rufa as outgroups. The depth of each branch shows divergence between lineages. Bootstrap values> 50% are provided at major nodes. The scale bar represents 0.01 genetic difference.
FIGURE 3 in First record of Archanara neurica (Hübner, 1808) from the Iberian Peninsula (Lepidoptera: Noctuidae) according to DNA barcoding and internal male genitalia
FIGURE 3. Male and female genital structures of Archanara neurica. A. Aedeagus with everted vesica of one of the specimens of Archanara neurica collected in the saltmarshes of Adventus near Trebujena, Cádiz, Spain; B. Male genitalia of a specimen of Archanara neurica collected in Denmark (MF4954) as published in Noctuidae Europaeae, vol. 8 (thanks to L. and G. Ronkay and to Marianne Fibiger); C. Female genitalia of a specimen of Archanara neurica collected in Denmark (MF5007) as published in Noctuidae Europaeae, vol. 8 (thanks to L. and G. Ronkay and to Marianne Fibiger).
FIGURE 1 in First record of Archanara neurica (Hübner, 1808) from the Iberian Peninsula (Lepidoptera: Noctuidae) according to DNA barcoding and internal male genitalia
FIGURE 1. Known distribution of A. neurica in the Western Palaearctic from GBIF (only verified records), BOLD and own records. The map was generated using www.simplemappr.net.
FIGURE 2 in First record of Archanara neurica (Hübner, 1808) from the Iberian Peninsula (Lepidoptera: Noctuidae) according to DNA barcoding and internal male genitalia
FIGURE 2. Adult specimens of Archanara neurica (Hübner, [1808])- A. Nominotypical form collected in the saltmarshes of Adventus near Trebujena, Cádiz, Spain, 20-V-2021; B. f. fusca Edelstein, 1911 collected in the saltmarshes of Adventus near Trebujena, Cádiz, Spain, 20-V-2021.
Diversity investigation by application of DNA barcoding: a case study of lepidopteran insects in Xinjiang wild fruit forests, China
<p><span>To investigate the species diversity of lepidopteran insects in Xinjiang wild fruit forests, establish insect community monitoring systems and determine the local species pool, we test the applicability of DNA barcoding based on </span><span>cytochrome c oxidase subunit I</span><span> (COI) gene for accurate and rapid identification of insect species</span><span>. From 2017 to 2019, a total of 212 samples with ambiguous morphological identification were selected for DNA barcoding analysis. Five sequence-based methods for species delimitation (ABGD, BINs, GMYC, jMOTU and bPTP) were conducted for comparison to traditional morphology-based identification. In total, 2,422 samples were recorded, representing 143 species of 110 genera in 17 families in Lepidoptera. The diversity analysis showed that the richness indices for Noctuidae was the highest (54 species), and for Pterophoridae, Cossidae, Limacodidae, Lasiocampidae, Pieridae and Lycaenidae were the lowest (all with 1 species). The Shannon-Wiener species diversity index (H') and Pielou's evenness (J') of lepidopteran insects first increased and then decreased across these three years, while the Simpson diversity index showed a trend of subtracted-then-added. For molecular-based identification, 67 lepidopteran species within 61 genera in 14 families were identified through DNA barcoding. Neighbor Joining (NJ) analysis showed that conspecific individuals were clustered together and formed monophyletic groups with a high support value, except for Lacanobia contigua (Denis & Schiffermüller, 1775) (Noctuidae: Hadeninae). Sixty-seven morphospecies were classified into various numbers of MOTUs based on ABGD, BINs, GMYC, jMOTU and bPTP (70, 96, 2, 71, and 71, respectively). In Xinjiang wild fruit forests, the family with the largest number of species is Noctuidae, followed by Geometridae, Crambidae, and the remaining families. The highest Shannon diversity index is observed for the family Noctuidae. Our results indicate that the distance-based methods (ABGD and jMOTU) and character-based method (bPTP) outperform GMYC. BINs is inclined to overestimate species diversity compared to other methods.</span></p>
FIGURE 50 in Revision of the subgenus Stegana (Steganina) from China, with assessment of species delimitation using DNA barcodes (Diptera, Drosophilidae)
FIGURE 50. Stegana (Steganina) menghai Zhang & Chen, sp. nov., male terminalia. A. Epandrium, surstylus, and cercus in lateral view; B, C. Hypandrium, pregonite, aedeagus, and phallapodeme in ventral and lateral views; D, E. Aedeagal sheath in ventral and lateral views; F. Subepandrial sclerite in ventral view.
FIGURE 44 in Revision of the subgenus Stegana (Steganina) from China, with assessment of species delimitation using DNA barcodes (Diptera, Drosophilidae)
FIGURE 44. Stegana (Steganina) hirticlavata Cui & Chen, sp. nov., male terminalia. A. Epandrium, surstylus, and cercus in lateral view; B. Surstylus in ventral view; C, D. Hypandrium, pregonite, aedeagus, and phallapodeme in ventral and lateral views; E, F. Aedeagal sheath in ventral and lateral views; G. Subepandrial sclerite in ventral view.
FIGURE 42 in Revision of the subgenus Stegana (Steganina) from China, with assessment of species delimitation using DNA barcodes (Diptera, Drosophilidae)
FIGURE 42. Female terminalia in Stegana (Steganina) glaucopalpula Cui & Chen, sp. nov. (A–C), S. (S.) idiasta Cui & Chen, sp. nov. (D–F), and S. (S.) labao Cui & Chen, sp. nov. (G–I). A, D, G. Epiproct and cercus in dorsal view; B, E, H. Eighth sternite in ventral view; C, F, I. Hypoproct in ventral view.
FIGURE 51 in Revision of the subgenus Stegana (Steganina) from China, with assessment of species delimitation using DNA barcodes (Diptera, Drosophilidae)
FIGURE 51. Stegana (Steganina) menglian Li & Chen, sp. nov., male terminalia. A. Epandrium, surstylus, and cercus in lateral view; B. Surstylus in ventral view; C, D. Hypandrium, pregonite, aedeagus, and phallapodeme in ventral and lateral views; E, F. Aedeagal sheath in ventral and lateral views; G. Subepandrial sclerite in ventral view.
FIGURE 54 in Revision of the subgenus Stegana (Steganina) from China, with assessment of species delimitation using DNA barcodes (Diptera, Drosophilidae)
FIGURE 54. Stegana (Steganina) nayun Li & Chen, sp. nov., male (A–G) and female terminalia (H–J). A. Epandrium, surstylus, and cercus in lateral view; B. Surstylus in ventral view; C, D. Hypandrium, pregonite, aedeagus, and phallapodeme in ventral and lateral views; E, F. Aedeagal sheath in ventral and lateral views; G. Subepandrial sclerite in ventral view; H. Epiproct and cercus in dorsal view; I. Eighth sternite in ventral view; J. Hypoproct in ventral view.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.