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Figure 8 from: Wayland MT, Vainio JK, Gibson DI, Herniou EA, Littlewood TDJ, Väinölä R (2015) The systematics of Echinorhynchus Zoega in Müller, 1776 (Acanthocephala, Echinorhynchidae) elucidated by nuclear and mitochondrial sequence data from eight European taxa. ZooKeys 484: 25-52. https://doi.org/10.3897/zookeys.484.9132
Figure 8 - Structure of the vagina in Echinorhynchus spp. A Echinorhynchus brayi, a species with a single vaginal sphincter B Echinorhynchus salmonis, a species with two vaginal sphincters.
Figure 5 from: Wayland MT, Vainio JK, Gibson DI, Herniou EA, Littlewood TDJ, Väinölä R (2015) The systematics of Echinorhynchus Zoega in Müller, 1776 (Acanthocephala, Echinorhynchidae) elucidated by nuclear and mitochondrial sequence data from eight European taxa. ZooKeys 484: 25-52. https://doi.org/10.3897/zookeys.484.9132
Figure 5 - Phylogenetic relationships of Echinorhynchus spp. inferred from maximum parsimony analysis of COI data-set. Trees are rooted on the outgroup Acanthocephalus lucii. A Phylogram estimated using maximum parsimony analysis of COI sequence data. Numbers at nodes indicate bootstrap support (n = 10,000) B Consensus cladogram from maximum parsimony analysis of COI sequence data excluding third codon positions. Numbers at nodes indicate bootstrap support (n = 10,000).
Figure 2 from: Wayland MT, Vainio JK, Gibson DI, Herniou EA, Littlewood TDJ, Väinölä R (2015) The systematics of Echinorhynchus Zoega in Müller, 1776 (Acanthocephala, Echinorhynchidae) elucidated by nuclear and mitochondrial sequence data from eight European taxa. ZooKeys 484: 25-52. https://doi.org/10.3897/zookeys.484.9132
Figure 2 - Cement gland arrangements of the genera recognised by Petrochenko (1956). E. Echinorhynchus. M. Metechinorhynchus. P. Pseudoechinorhynchus.
Figure 1 from: Wayland MT, Vainio JK, Gibson DI, Herniou EA, Littlewood TDJ, Väinölä R (2015) The systematics of Echinorhynchus Zoega in Müller, 1776 (Acanthocephala, Echinorhynchidae) elucidated by nuclear and mitochondrial sequence data from eight European taxa. ZooKeys 484: 25-52. https://doi.org/10.3897/zookeys.484.9132
Figure 1 - Historical record of species discovery in Echinorhynchus. Recognised diversity, as measured by the cumulative number of described taxa, plotted against time. Only species recognised by Amin (2013) are included.
Figure 3 from: Wayland MT, Vainio JK, Gibson DI, Herniou EA, Littlewood TDJ, Väinölä R (2015) The systematics of Echinorhynchus Zoega in Müller, 1776 (Acanthocephala, Echinorhynchidae) elucidated by nuclear and mitochondrial sequence data from eight European taxa. ZooKeys 484: 25-52. https://doi.org/10.3897/zookeys.484.9132
Figure 3 - Phylogram estimated using Bayesian inference analysis of 28S rDNA sequence data. Numbers at nodes are clade support values (%) for each method of phylogeny reconstruction (BI/ML/MP). Tree is rooted on the outgroup Acanthocephalus lucii.
Figures 1-3 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 1-3 - Mycetophila ichneumonea Say, 1823, a typical member of the Mycetophila ruficollis group. 1 male habitus 2 head with maxillary palpi, closer view 3 male terminalia, closer view. Scale bar = 1 mm (1), 0.5 mm (2) and 0.2 mm (3). Abbreviations: plp = segments of maxillary palpus; gc = gonocoxite; gst d = dorsal branch of gonostylus; gst v = ventral branch of gonostylus.
Figures 27-32 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 27-32 - Ventral branch of gonostylus, ventral view (27, 29, 31) and internal view (28, 30, 32). 27, 28 Mycetophila strobli 29, 30 Mycetophila suffusala 31, 32 Mycetophila uninotata. Scale bar = 0.05 mm.
Figure 5 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figure 5 - Consensus of most parsimonious trees calculated from combined COI and ITS2 rDNA sequence data of the Mycetophila ruficollis species group. Bootstrap support values are presented above the branches and posterior probability values below the branches. For gnats reared from fungal fruitbodies, the host is indicated.
Figure 4 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figure 4 - Bayesian consensus tree of the COI regions of Mycetophila ruficollis species group. Posterior probability values are presented above the branches and bootstrap support values below the branches. Scale bar indicates substitutions per site. For gnats reared from fungal fruitbodies, the host is indicated.
Figures 33-38 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 33-38 - Gonocoxites with aedeagal complex, dorsal view (33, 35, 37) and ventral view (34, 36, 38). 33, 34 Mycetophila britannica 35, 36 Mycetophila idonea 37, 38 Mycetophila ichneumonea. Scale bar = 0.2 mm. Abbreviations: aed = aedeagus; aed ap = aedeagal apodeme; aed gd = aedeagal guide; aed gd li = lateral impression on the aedeagal guide; ej ap = ejaculatory apodeme; ej ap b = base of ejaculatory apodeme; ej tb r = rim of ejaculatory apodeme; gc = gonocoxite; gc ai = anterior impression of gonocoxite; gc pi = posterior impression of gonocoxite; gc pm = posterior margin of gonocoxite.
Figure 3 from: Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as 'Big Pink' is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. https://doi.org/10.3897/phytokeys.56.5432
Figure 3 - Dendrochilum hampelii: a habit b floral bract c flower d flower (sepals and petals removed) e dorsal sepal f petal g lateral sepal h labellum i column, front view j anther k pollinia. Drawing by Esmee Winkel based on Hort. bot. Leiden 20130654 (L! [spirit no. WAG0116920]).
Figures 45-50 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 45-50 - Gonocoxites with aedeagal complex, dorsal view (45, 47, 49) and ventral view (46, 48, 50). 45, 46 Mycetophila strobli 47, 48 Mycetophila suffusala 49, 50 Mycetophila uninotata. Scale bar = 0.2 mm.
Figure 2 from: Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as 'Big Pink' is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. https://doi.org/10.3897/phytokeys.56.5432
Figure 2 - Above: alignment of nrITS sequences of the ingroup species from our phylogenetic analyses. For 'Big Pink' (Dendrochilum hampelii) and its apparently closest relatives among our study species, electropherograms are shown in red boxes. The electropherograms show clear distinct peaks; the species-specific mutation of 'Big Pink' is indicated by a red arrow. Below: electropherogram of 'Big Pink' (Dendrochilum hampelii) covering a larger region of nrITS; the distinct single peaks in both the forward and reverse sequences suggest this is a wild species rather than an artificial hybrid (see text for details).
Figure 1 from: Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as 'Big Pink' is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. https://doi.org/10.3897/phytokeys.56.5432
Figure 1 - Phylogenetic relationships amongst the sampled species of Dendrochilum, created using BEAST and PAUP*. The values on the nodes represent posterior probabilities, whereas branch lengths indicate to the relative number of changes: A comparison between topologies based on nrITS and matK + ycf1 matrices B topology resulting from the combined nrITS + matK + ycf1 data matrices.
Figures 21-26 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 21-26 - Ventral branch of gonostylus, ventral view (21, 23, 25) and internal view (22, 24, 26). 21, 22 Mycetophila evanida 23, 24 Mycetophila ruficollis 25, 26 Mycetophila sepulta. Scale bar = 0.05 mm.
Figures 39-44 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 39-44 - Gonocoxites with/and aedeagal complex, dorsal view (39, 41, 43) and ventral view (40, 42, 44). 39, 40 Mycetophila evanida 41, 42 Mycetophila ruficollis 43, 44 Mycetophila sepulta. Scale bar = 0.2 mm.
Figure 4 from: Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as 'Big Pink' is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. https://doi.org/10.3897/phytokeys.56.5432
Figure 4 - Dendrochilum hampelii: A portion of inflorescence of cultivated pinkish salmon-coloured form B habit. Photographs by Lubbert Westra of Hort. bot. Leiden 20130654 (L! [spirit no. WAG0116920]) C portion of inflorescence of pale yellow-coloured form of a plant growing in the wild in the Philippines in the Misamis Oriental province of the island of Mindanao. Photograph by James Cootes.
Figures 6-14 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 6-14 - Dorsal branch of gonostylus. 6 Mycetophila britannica 7 Mycetophila idonea 8 Mycetophila evanida 9 Mycetophila ichneumonea 10 Mycetophila ruficollis 11 Mycetophila sepulta 12 Mycetophila strobli 13 Mycetophila suffusala 14 Mycetophila uninotata. Scale bar = 0.1 mm. Abbreviations: ba = basal angle; bm = basal margin; lm = lateral margin; pm = posterior margin; mb = medial bristle; dpp= distal posterior process; ppp = proximal posterior process.
Figures 15-20 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 15-20 - Ventral branch of gonostylus, ventral view (15, 17, 19) and internal view (16, 18, 20). 15, 16 Mycetophila britannica 17, 18 Mycetophila idonea 19, 20 Mycetophila ichneumonea. Scale bar = 0.05 mm. Abbreviations: pp = posterior process; sp = posterior spines on the ventral branch of gonostylus.
Figure 9 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 9 - Uncatalogued Alburnoides coadi, 84.0 mm SL; Iran, Tehran Prov., Nam River, at Firoz Koh, 35°43'20.8"N 52°39'20.0"E.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.