Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,848
datasets available to search
ShareScore release 0.9.0
Dataset results
2,848 results for “sequence data”
Figure 8 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 8 - Results of a DMS analysis showing observed similarities/dissimilarities (distances) between the examined groups of samples of Alburnoides, from the Caspian Sea basin and adjacent endorheic basins, based on meristic characters (Table 5). 1 Alburnoides eichwaldii 2 Alburnoides cf. eichwaldii: west of Safid River 3 Alburnoides samiii 4 Alburnoides tabarestanensis 5 Alburnoides parhami 6 Alburnoides parhami (data from Mousavi-Sabet et al. 2015b) 7 Alburnoides holciki 8 Alburnoides varentsovi 9 Alburnoides sp. Amu Darya River 10 Alburnoides damghani sp. n. 11 Alburnoides namaki 12 Alburnoides coadi (data from Mousavi-Sabet et al. 2015b) 13 Alburnoides petrubanarescui.
Figure 6 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 6 - Alburnoides damghani sp. n., radiograph of a paratype (ZM-CBSU 2011-1) showing 20+20 vertebral formula.
Figure 5 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 5 - Live specimen of Alburnoides damghani sp. n., Iran, Semnan Prov., Cheshmeh Ali, Damghan River tributary.
Figure 4 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 4 - Alburnoides damghani sp. n., paratypes CMNFI 2015-0091A, a, 67.6 mm SL, b, 60.5 mm SL, Iran, Semnan Prov., Cheshmeh Ali, Damghan River tributary.
Figure 3 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 3 - Alburnoides damghani sp. n., CMNFI 2015-0091, holotype, female, 67.0 mm SL; Iran, Semnan Prov., Cheshmeh Ali, Damghan River tributary.
Figure 2 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 2 - Bayesian analysis (based on COI gene sequences) of phylogenetic relationships of Alburnoides damghani and related taxa.
Figure 1 from: Jouladeh Roudbar A, Eagderi S, Esmaeili HR, Coad BW, Bogutskaya N (2016) A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae). ZooKeys 579: 157-181. https://doi.org/10.3897/zookeys.579.7665
Figure 1 - Distribution and sampling sites of Alburnoides species in Iran and adjacent areas. 1 Alburnoides eichwaldii: Aras River, Kura River drainage 2 Alburnoides cf. eichwaldii: west of Safid River 3 Alburnoides samiii: Safid River 4 Alburnoides tabarestanensis: Tajan River 5 Alburnoides parhami: Atrek River 6 Alburnoides parhami: type locality Baba-Aman stream 7 Alburnoides holciki: Hari River 8 Alburnoides varentsovi: Ashkhabadka River, northern slope of Kopetdag Mountains 9 Alburnoides sp. Amu Darya River 10 Alburnoides damghani sp. n.: Cheshmeh Ali, Damghan River system, Dasht-e Kavir basin 11 Alburnoides namaki: Qarah River, Namak Lake basin 12 Alburnoides coadi: Nam River, Dasht-e Kavir basin 13 Alburnoides petrubanarescui: Orumiyeh Lake basin 14 Alburnoides nicolausi: Nor Abad River, Tigris River system 15 Alburnoides idignensis: Bid Sorkh River, Tigris River system 16 Alburnoides qanati: Pulvar River, Kor River system 17 Alburnoides qanati: Masih Spring, Sirjan basin.
Figure 8 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 8 - Posterior body and genitalia of Paracobanocythere vietnamensis sp. n. Female, paratype (NSMT-Cr 24326). Scale bar indicates 50 µm.
Figure 6 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 6 - Appendages of Paracobanocythere vietnamensis sp. n. A and C male paratype (NSMT-Cr 24320) B male holotype (NSMT-Cr 24314) D female paratype (NSMT-Cr 24326) A fifth limb B sixth limb C seventh limb D sixth limb. Scale bar indicates 50 µm.
Figure 3 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 3 - Valves of Paracobanocythere vietnamensis sp. n. Male, holotype (NSMT-Cr 24314). A left internal lateral view B right internal lateral view. Scale bar indicates 100 µm.
Figure 2 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 2 - SEM images of valves and carapace of Paracobanocythere vietnamensis sp. n. A and B male paratype (NSMT-Cr 24315) C, D, M–O male, paratype (NSMT-Cr 24316) E and F female, paratype (NSMT-Cr 24327) G male, paratype (NSMT-Cr 24317) H male paratype (NSMT-Cr 24318) I female, paratype (NSMT-Cr 24328) J female, paratype (NSMT-Cr 24329) K male, paratype (NSMT-Cr 24319) L female, paratype (NSMT-Cr 24330). A right external lateral view B left external lateral view C right internal lateral view, anteroventral margin is slightly damaged D left internal lateral view E right external lateral view F left external lateral view G dorsal view H ventral view I dorsal view J ventral view K anterior view L anterior view M hingement part of left valve N hingement part of right valve O adductor muscle scars of left valve. Scale bar indicates 100 µm (A–N) and 40 µm (O). Arrows indicate anterior direction.
Figure 1 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 1 - Map showing sampling locality of Paracobanocythere vietnamensis sp. n. A western part of Southeast Asia B Phu Quoc Island, Vietnam C The Dăm Ngoài Island. Arrowhead indicates the type locality.
Figure 4 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 4 - SEM images of the detailed structure of Paracobanocythere vietnamensis sp. n. A and B male paratype (NSMT-Cr 24315) C male paratype (NSMT-Cr 24316) A three pore systems and small granular texture in external lateral view B sieve type normal pore with recessed sieve plate and thick rim C internal view of sieve plate of sieve type normal pore. Scale bars indicate 5 µm.
Figure 7 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 7 - Copulatory organ of Paracobanocythere vietnamensis sp. n. Male, paratype (NSMT-Cr 24320) A internal view of right organ B internal view of left organ. Abbreviations: Dl distal lobe Hp hooked process Ps pincer-like structure Tc tip of capsule. Scale bar indicates 50 µm.
Figure 5 from: Tanaka H, Dung LD, Higashi R, Tsukagoshi A (2016) A new interstitial ostracod species of the genus Paracobanocythere from Vietnam, with mitochondrial CO1 sequence data of three Asian species. ZooKeys 559: 17-33. https://doi.org/10.3897/zookeys.559.6751
Figure 5 - Appendages of Paracobanocythere vietnamensis sp. n. Male, holotype (NSMT-Cr 24314). A antennula B antenna C mandibula D maxillula E brush-shaped organ. Scale bar indicates 50 µm (A–D) and 25 µm (E).
Zona pellucida (ZP3) sequence data from 230 Pacific cod (phased)
<p>Genetic differentiation has been observed in marine species even when no obvious barriers to gene flow exist, and understanding such differentiation is essential for effective fisheries management. Highly differentiated outlier loci can provide information on how genetic variation might contribute to local adaptation but may also be affected by historical demographic events. A locus which aligned to a predicted zona pellucida sperm-binding protein 3 gene (ZP3) in Atlantic cod (<i>Gadus morhua</i>) was previously identified as the highest outlier based on <i>F</i><sub>ST</sub> in a RADseq study of Pacific cod (<i>Gadus macrocephalus</i>) across the West Coast of North America. However, because of the limited length of the RAD sequence and restricted geographic area of sampling, no conclusion on the functional significance of the observed variation was possible. In other marine species, ZP3 is involved in reproductive isolation, local adaptation, and has neofunctionalized as an antifreeze gene, and so it may provide important insights in functional population structure of Pacific cod. Here, we sequenced a 544 bp region of ZP3 in 230 Pacific cod collected from throughout their geographic range. We observed striking patterns of spatial structuring of ZP3 haplotypes, with a sharp break near Kodiak, Alaska, USA where populations within ~200 km of each other are nearly fixed for different haplotypes, contrasting a pattern of isolation by distance at other genetic markers in this region (<i>F</i><sub>ST</sub> = 0.003). Phylogenetic analysis of ZP3 haplotypes revealed that the more southern haplotypes appear to be ancestral, with the northern haplotype evolving more recently, potentially in response to a novel selective pressure as Pacific cod recolonized northern latitudes after glaciation. The sharp break in haplotype frequencies suggests strong selective pressures are operating on small spatial scales and illustrates that selection can create high divergence even in marine species with ample opportunities for gene flow.</p>
FIG. 2 in A synopsis of Ptisana Murdock ferns (Marattiaceae) in New Caledonia based on sequence data and morphology with the recognition of a new vulnerable species, P. soluta (Compton) Murdock & Perrie, comb. nov., stat. nov.
FIG. 2. — Ptisana rolandi-principis (Rosenst.) Christenh. field photos: A, adaxial surface of individual with several fronds, with finger for scale. B, abaxial surface of frond with immature synangia. Photos: Leon Perrie, from Plateau de Dogny.
Sequenced Data COPD and healthy
<p>The provided FastQ data are sequenced in Illumina MiSeq.</p>
Supporting data for Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater
<p>This dataset contains the FASTQ files used in the paper <em>Comparison of Oxford Nanopore and Illumina sequencing for SARS-CoV-2 variant monitoring in wastewater</em>. </p> <p>The FASTQ files are classified in 2 different folders: MinION and MiSeq. Inside the MinION folder, there are two more folders, one for the R9.4.1 flow cell data and the other for the R10.4.1 flow cell data. </p> <p>Twist synthetic RNA mixtures are named as mix1, mix2, etc. </p> <p>Twist synthetic RNA corresponding to the Wuhan sequence is named as mix11_WH</p> <p>Wastewater samples are named as WWTP_1, WWTP_2, etc. </p>
Data files for "Comprehensive Wastewater Sequencing Reveals Community and Variant Dynamics of the Collective Human Virome"
<p>Files required to run analyses and generate charts for R notebooks at: <a href="https://github.com/cmmr/TX_wastewater_virome">https://github.com/cmmr/TX_wastewater_virome</a></p> <p> </p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.