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150
datasets available to search
ShareScore release 0.9.0
Dataset results
150 results for “5hmC”
Efficacy of Hypomethylating Agents vs. Intensive Chemotherapy in Acute Myeloid Leukemia Using 5hmC as a Blood-Based Minimal Residual Disease Marker
ClinicalTrials.gov study NCT07060001. IPD Sharing: YES. Countries: 1. Publications: 63.
A study of alterations DNA epigenetic modifiincations (5mC and 5hmC) influenced by simulated microgravity in human lymphoblastoid cells
Here in this study we systematically examined the patterns of DNA methylation and hydroxy-methylation with its functional implications in gene regulation for the cultured TK6 lymphoblastoid cells upon exposure to micro-gravity conditions. The results reported here indicate that simulated microgravity alters methylation patterns in a limited way and subsequently the expression of genes involved in stress response like ATF3 FBXO17 MAP3K13 and VCL in TK6 cells. Overall design: Examination of 2 different DNA modifications with 2 replicates each for 1 cell type.
TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [BS-seq]
GEO Series GSE116202. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing.
Direct, bisulfite-free 5mC and 5hmC sequencing at single-cell resolution
GEO Series GSE255771. Mus musculus; Homo sapiens. 585 samples. Type: Other.
The bZIP mutant CEBPB(V285A) has DNA binding propensities similar to CREB1 [CEBPMut_5mC_5hmC]
GEO Series GSE112018. synthetic construct; Mus musculus. 21 samples. Type: Other.
Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects
GEO Series GSE236798. Mus musculus. 1479 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Control of 5mC and 5hmC by TET dioxygenases in human embryonic carcinoma cells [MBD-Seq]
GEO Series GSE51902. Homo sapiens. 14 samples. Type: Methylation profiling by high throughput sequencing.
TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration [micro-C-Seq]
GEO Series GSE230409. Homo sapiens. 4 samples. Type: Other.
Distribution of genomic 5hmC marks in HCC827 and HCC827-TET2-KO cell line [HCC827_TET2_KO_5hmC]
GEO Series GSE222827. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
Nitric oxide inhibits ten-eleven translocation DNA demethylase activity to regulate 5mC and 5hmC across the genome [RNA-seq]
GEO Series GSE248150. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
A highly sensitive and robust method for genome-wide 5hmC profiling of rare cell populations
GEO Series GSE77967. Mus musculus. 56 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (bisulfite sequencing data)
GEO Series GSE28533. Mus musculus. 4 samples. Type: Methylation profiling by high throughput sequencing.
TET2 regulates genes expressed in the differentiated corneal epithelium through 5hmC modification
GEO Series GSE216213. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
TET2 is a component of the ER complex and controls 5mC to 5hmC conversion at ER cis-regulatory regions [RNA-Seq]
GEO Series GSE153250. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [RNA-seq]
GEO Series GSE116204. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
5hmC (48hpf WT dissected heart) 5hMe-Bead-Integrated Click-seq (5hMe-BIC-seq)
GEO Series GSE121988. Danio rerio. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
5hmC and gene expression data in breast cancer cell lines treated with an antioxidant
GEO Series GSE103850. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation
GEO Series GSE97992. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
TET2 is a component of the ER complex and controls 5mC to 5hmC conversion at ER cis-regulatory regions [MMS/RRHP]
GEO Series GSE153252. Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing.
5hmC RNA role in mouse Embryonic stem cell differentiation to Embryonic bodies [RNA-seq]
GEO Series GSE131898. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.