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7 results for “Alkaline environment”
Dataset from Nature Materials paper: Amorphous nickel hydroxide shell tailors local chemical environment on platinum surface for alkaline hydrogen evolution reaction
<p>Dataset of the paper "Amorphous nickel hydroxide shell tailors local chemical environment on platinum surface for alkaline hydrogen evolution reaction" accepted in Nature Materials.</p> <p>- GCGA_inputs.zip: A zip file containing all needed input files to run a grand canonical genetic algorithm (GCGA) global optimization structure search. Note that the script would need modifications to be compatible with later version of the GOCIA package, please following the most updated instructions at https://github.com/zishengz/gocia</p> <p>- GCGA_Ni12OxHy_all_samples.db: An ASE database file containing all unique structures from the GCGA search of Ni12OxHy on a Pt(111) surface. </p> <p>- GM_Ni12O25H13.vasp: The structure of the global minimum structure from GCGA search, which is also the surface structure we focused on in this study, in VASP structure format.</p> <p>- rxn_structures.zip: A zip file containing the structures of reaction intermediates investigated in this work, in VASP structure format</p> <p> </p>
Data from: Coral reef carbonate budgets and ecological drivers in the central Red Sea – a naturally high temperature and high total alkalinity environment
The structural framework provided by corals is crucial for reef ecosystem function and services, but high seawater temperatures can be detrimental to the calcification capacity of reef-building organisms. The Red Sea is very warm, but total alkalinity (TA) is naturally high and beneficial for reef accretion. To date, we know little about how such detrimental and beneficial abiotic factors affect each other and the balance between calcification and erosion on Red Sea coral reefs, i.e., overall reef growth, in this unique ocean basin. To provide estimates of present-day reef growth dynamics in the central Red Sea, we measured two metrics of reef growth, i.e., in situ net-accretion/-erosion rates (Gnet) determined by deployment of limestone blocks and ecosystem-scale carbonate budgets (Gbudget), along a cross-shelf gradient (25km, encompassing nearshore, midshore, and offshore reefs). Along this gradient, we assessed multiple abiotic (i.e., temperature, salinity, diurnal pH fluctuation, inorganic nutrients, and TA) and biotic (i.e., calcifier and epilithic bioeroder communities) variables. Both reef growth metrics revealed similar patterns from nearshore to offshore: net-erosive, neutral, and net-accretion states. The average cross-shelf Gbudget was 0.66kg CaCO3m−2yr−1, with the highest budget of 2.44kg CaCO3m−2yr−1 measured in the offshore reef. These data are comparable to the contemporary Gbudgets from the western Atlantic and Indian oceans, but lie well below optimal reef production (5–10kg CaCO3m−2yr−1) and below maxima recently recorded in remote high coral cover reef sites. However, the erosive forces observed in the Red Sea nearshore reef contributed less than observed elsewhere. A higher TA accompanied reef growth across the shelf gradient, whereas stronger diurnal pH fluctuations were associated with negative carbonate budgets. Noteworthy for this oligotrophic region was the positive effect of phosphate, which is a central micronutrient for reef building corals. While parrotfish contributed substantially to bioerosion, our dataset also highlights coralline algae as important local reef builders. Altogether, our study establishes a baseline for reef growth in the central Red Sea that should be useful in assessing trajectories of reef growth capacity under current and future ocean scenarios.
Data from: The effect of weathering on bird bone survivorship in modern and fossil saline-alkaline lake environments
A modern Lesser Flamingo (Phoeniconaias minor) assemblage was collected along the shoreline of Lake Emakat, a saline-alkaline lake in northern Tanzania. Taphonomic analysis found the assemblage to be heavily weathered. This is likely due to the bone's heightened exposure to solar radiation and corrosive soil and water chemistries, as is expected to occur in such depositional environments. Analysis found that deep, wide, longitudinal cracks penetrate the medullar cavities of both weathered and unweathered long bones. The cause and taphonomic consequence of these cracks are addressed here, using data from Lake Emakat and from controlled studies. Results support repeated (episodic) submersion, followed by drying, as the causal mechanism behind these wet-dry cracks. Mineral salt uptake by bone may explain the early appearance and prevalence of these cracks in saline-alkaline lake settings, as compared to other depositional settings. The rate of weathering and incidence of wet-dry cracking varies significantly across limb elements. This difference correlates to element specific resistance properties to external loading forces. Heavy weathering weakens the structural integrity of bone and can accelerate its fragmentation. This can lead to bird bone loss in nearshore and ephemeral wetland settings, which may then affect resulting skeletal part, diversity, and richness profiles. Heavy weathering can therefore obscure important taphonomic and paleoecological information. The weathering data collected here are then applied to a fossil bird assemblage from the FLK Complex, (late Pliocene), Olduvai Gorge, in Tanzania. Results provide evidence for the effect of weathering on paleoecological and behavioral interpretations. Weathering should be considered when analyzing fossil bird assemblages.
Data from: Coral reef carbonate budgets and ecological drivers in the central Red Sea – a naturally high temperature and high total alkalinity environment
Open the record for dataset details and reuse information.
Data from: The effect of weathering on bird bone survivorship in modern and fossil saline-alkaline lake environments
Open the record for dataset details and reuse information.
Transcriptomic analysis of the role of Rim101 in the adaptation of Ustilago maydis to an alkaline environment
GEO Series GSE53341. Mycosarcoma maydis. 2 samples. Type: Expression profiling by array.
Bacterial rapid adaptation to alkaline environments
GEO Series GSE270261. Bacillus thuringiensis. 6 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.