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52 results for “American tropics”
Data and analysis scripts for Zizka et al., Finding needles in the haystack: Where to look for rare species in the American tropics
<p>The analysis scripts and data from: Zizka A, ter Steege H, Pessoa MDC, Antonelli A (2017) Finding needles in the haystack: Where to look for rare species in the American tropics. Ecography.</p>
Seasonal orographic effect of North American Mountain Range at different levels and its remote control on tropical climate
<p><a name="OLE_LINK36"></a><a name="OLE_LINK37"></a><a name="OLE_LINK81"></a><a name="OLE_LINK6"></a><span><span><span><span>Orography significantly influences global climate patterns. </span></span></span></span><a name="OLE_LINK32"></a><a name="OLE_LINK33"></a><span><span><span><span><span><span>Previous studies show the North American Mountain Range (NAMR) impacts regional climates seasonally but have not thoroughly illustrated the seasonally different atmospheric responses in the lower and upper troposphere, respectively. </span></span></span></span></span></span><span><span><span><span><span>Using the Community Earth System Model version 1.2 with a slab ocean configuration, we investigate the NAMR’s seasonal impacts by simulating scenarios with and without the mountain range. Our findings reveal that the NAMR induces contrasting responses in sea surface temperature (SST) and precipitation off California in different seasons, indicating different underlying mechanisms. Through analysis of large-scale circulation and local energy budgets, we find that in summer, the NAMR reinforces the North Pacific High causing SST cooling and drying off California. This cooling propagates to the equatorial Pacific via anomalous northeasterlies, influencing the Intertropical Convergence Zone and initiating a climatic signal through the Pacific Meridional Mode, which crosses the equator and affects Southern Hemisphere temperatures. In winter, the NAMR reduces wind speed and evaporation, leading to SST warming off California, amplified by SST-cloud feedback. In the upper troposphere, we observe seasonal shifts in jet stream patterns: during winter, a weakened, equatorward-shifted jet over the Pacific and a strengthened, poleward-shifted branch over the Atlantic; in summer, the jet stream intensifies over and downstream of the mountains while weakening upstream. Our research highlights distinct seasonal mechanisms by which the NAMR influence climate patterns, linking mid-latitude climate variations to equatorial, cross-hemispheric and global changes.</span></span></span></span></span></p>
Data from: Geo-climatic factors drive diatom community distribution in tropical South American freshwaters
1.Patterns that maintain and generate biodiversity of macro-organisms in the Neotropics are widely discussed in the scientific literature, yet the spatial ecology of microorganisms is largely unknown. The unique character of the tropical Andes and adjacent Amazon lowlands generates a wide gradient of environmental conditions to advance our understanding of what drives community assembly and diversity processes. 2.We analyzed the distribution patterns of benthic diatoms (unicellular siliceous algae) as a model group of microbial passive dispersers, including predictors that describe limnological and geo-climatic gradients for a total of 113 waterbodies (0–28ºS and 58–80ºW), including lakes and streams. Complementary multivariate statistical analyses were performed to correlate i) community composition, and ii) diatom species richness with environmental and spatial factors to infer niche-based and dispersal-based assembly processes, respectively. 3.Results showed that two gradients structured both diatom assemblages and waterbodies, namely climate and landscape configuration. Variance partitioning revealed that broad-scale spatial variables (distance-based Moran's Eigenvectors) outperformed the two environmental components (limnological and geo-climatic), suggesting dispersal-assembled communities. However, diatom assemblages were structured by geo-climatic (regional) factors in certain lakes in the northern and central Andes, although their effects were partially manifested via local variables after the geographical distances were factored out. In a similar way, climatic and topographic structuring homogenized lake and stream communities within ecoregions, as indicated by the strong overlap between the two community types and the weak correlation between biota and limnological variables. Notably, a significant increase in diatom species richness was related to increased water connectivity, interpreted to indicate that a decrease in the remoteness of the system increase species number. 4.Synthesis. We emphasize the strength of macroecological gradients (landscape configuration and climatic factors) in affecting both diatom diversity and community composition in the South American tropics. In this context, our results and the commonalities of ecoregion patterning with groups of macroorganisms (vegetation), suggest the need to integrate microbial ecology into a macroecology framework to unravel mechanisms behind diversity gradients.
Data from: Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae)
With 788 species in 67 genera in the Neotropics, Arecaceae are an important ecological and economic component of the region. We review the influence of geological events such as the Pebas system, the Andean uplift and the land connections between South and Central/North America, on the historical assembly of Neotropical palms. We present a case study of the palm genus Astrocaryum (40 species) as a model for evaluating colonization and diversification patterns of lowland Neotropical taxa. We conducted a Bayesian dated phylogenetic analysis based on four low-copy nuclear DNA regions and a biogeographical analysis using the dispersal, extinction and cladogenesis model. Cladogenesis of Western Amazonian Astrocaryum spp. (c. 6 Mya) post-dated the drainage of the aquatic Pebas system, supporting the constraining role of Pebas on in situ diversification and colonization. The ancestral distribution of Astrocaryum spp. in the Guiana Shield supported the hypothesis of an old formation that acted as a source area from which species colonized adjacent regions, but an earliest branching position for Guianan species was not confidently recovered. A twofold increase in diversification rate was found in a clade, the ancestor of which occupied the Guiana Shield (c. 13 Mya, a time of climatic change and Andean uplift).
Lianas and trees exhibit divergent intrinsic water-use efficiency along elevational gradients in South American and African tropical forests
<p>Elevational gradients provide excellent opportunities to explore long-term morphological and physiological responses of plants to environmental change. We determined the difference in the elevational pattern of foliar carbon isotope composition (<i>δ</i><sup>13</sup>C) between lianas and trees, and assessed whether this difference arises from changes in photosynthesis or stomatal conductance. We also explored the pattern of nutrient limitations with the elevation of these two growth forms. We conducted inventories of lianas and trees using standardized techniques along elevational gradients in Ecuador and Rwanda. We determined the values of several foliar traits including <i>δ</i><sup>13</sup>C and chemical traits in dominant liana and tree species. We set up Bayesian linear mixed-effect models to quantify the effects of elevation and these two growth forms, and the difference of the effect of elevation between the two growth forms on each of the foliar traits. We found consistent growth form specific divergences in foliar<i> δ</i><sup>13</sup>C and carbon to nitrogen ratio (C:N) responses to elevation. While we noted a meaningful increase in foliar <i>δ</i><sup>13</sup>C and C:N with elevation for trees, lianas did not exhibit such a trend. Foliar <i>δ</i><sup>13</sup>C and C:N remained relatively constant for lianas along the transects. The physiological processes at the basis of foliar carbon isotope fractionation shift differently in lianas and trees along elevation. Lianas operate at relatively constant intrinsic water- and nitrogen- use efficiencies with elevation as opposed to trees. Altogether, the study suggests the existence of a functional divergence of water and nutrient use strategies between lianas and trees along tropical elevational transects.</p>
Data from: Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae)
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Data from: Geo-climatic factors drive diatom community distribution in tropical South American freshwaters
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Speciation, dispersal, and the build-up of fern diversity in the American tropics
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Lianas and trees exhibit divergent intrinsic water-use efficiency along elevational gradients in South American and African tropical forests
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Soil biogeochemistry across Central and South American tropical dry forests
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Data from: Traits that allow bats of tropical lowland origin to conquer mountains: bat assemblages along elevational gradients in the South American Atlantic Forest
Aim: This study aims to contribute to the identification of ecological determinants of tropical moist forest montane biodiversity, analyzing changes in the structure of bat assemblages along an elevational gradient and testing the role of species traits shaping those assemblages. Location: Mountain ranges in the Brazilian Atlantic Forest. Methods: We compiled a dataset with the composition of phyllostomid bat assemblages at 32 forested sites, ranging from 60m to 1960m a.s.l. We quantified how abundance and diversity changed along this elevational gradient, and assessed the capacity of each species to be present and abundant at each elevation, identifying traits that may influence that capacity. Results: Abundance and species diversity declined markedly with increasing elevation. Tolerance to low temperatures, low habitat specialization, and cave roosting facilitated success at higher elevations. Owing to trait filtering, and to changes in resource availability with elevation, assemblages were progressively dominated by a smaller number of mostly generalist species as elevation increased. Higher elevations harbor only a subset of the species that are present in the lowland forest, with no mountain specialized species. Main conclusions: High mountains harbor phyllostomid assemblages that are impoverished subsets of those at lower elevations. Phyllostomids have a tropical origin and may thus have a low potential to adapt to montane forest environments, which possibly explains the observed climatic trait filtering. Habitat filtering is also important, keeping forest specialists mostly at lowest elevations. Protected areas in the Atlantic Forest are mostly limited to mountains. While these areas are clearly important to protect biodiversity, including phyllostomid assemblages, it is now critical to protect and restore the few remnants of lower elevation Atlantic Forest where higher productivity and resource levels, increased complexity of vertical structure, and fewer climatic constraints favor the success of a wider range of phyllostomid bat species of tropical origin.
FIGURE 9. Triacanthoneus alacranes n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 9. Triacanthoneus alacranes n. gen., n. sp., holotype, ovigerous female (CL 3.7 mm) from Alacranes Reef, Yucatán, Mexico, UNAM-CNCR 26177: A, left (major) cheliped, lateral; B, same, carpus and chela, mesial; C, same, chela fingers; D, right (minor) cheliped, lateral; E, same, chela, mesial; F, second pereiopod, lateral; G, third pereiopod, lateral; H, same, distal propodus and dactylus; I, fifth pereiopod, lateral; J, same, distal propodus and dactylus, mesial.
FIGURE 8. Triacanthoneus alacranes n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 8. Triacanthoneus alacranes n. gen., n. sp., holotype, ovigerous female (CL 3.7 mm) from Alacranes Reef, Yucatán, Mexico, UNAM-CNCR 26177: A, frontal region, dorsal; B, carapace and frontal appendages, lateral; C, carapace, dorsal; D, post-hepatic tooth of carapace, lateral; E, mediodorsal tooth of carapace, lateral; F, distal rostrum, lateral; G, third maxilliped, lateral; H, same, tip of ultimate segment; I, second pleopod, appendix masculina and appendix interna; J, uropod, dorsal; K, same, posterior region of exopod; L, telson, dorsal; M, same, posterior region.
FIGURE 10 in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 10. Life colouration of three species of Triacanthoneus n. gen.: A–C, Triacanthoneus toro n. sp., paratype, ovigerous female from Bocas del Toro, Caribbean coast of Panama, USNM 1145376; D–F, Triacanthoneus pacificus n. sp., holotype, ovigerous female from Playa Venao, Pacific coast of Panama, USNM 1145374 [D, E], non-type ovigerous female from Bahía Malaga, Pacific coast of Colombia, UVC [F]; G, Triacanthoneus alacranes n. sp., holotype, ovigerous female from Alacranes Reef, Yucatán, Mexico, UNAM-CNCR 26177 [G by J. Duarte-Gutiérrez, all other photographs by author].
FIGURE 7. Triacanthoneus alacranes n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 7. Triacanthoneus alacranes n. gen., n. sp., holotype, ovigerous female (CL 3.7 mm) from Alacranes Reef, Yucatán, Mexico, UNAM-CNCR 26177: habitus, lateral.
FIGURE 6. Triacanthoneus pacificus n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 6. Triacanthoneus pacificus n. gen., n. sp., holotype, ovigerous female (CL 2.8 mm) from Playa Venao, Pacific coast of Panama, USNM 1145374: A, left (major) cheliped, lateral; B, same, carpus and chela, mesial; C, same, chela fingers; D, right (minor) cheliped, lateral; E, same, chela, mesial; F, second pereiopod, lateral; G, same, ischium; H, third pereiopod, lateral; I, same, distal propodus and dactylus; J, fifth pereiopod, lateral; K, same, propodus and dactylus, mesial.
FIGURE 4. Triacanthoneus toro n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 4. Triacanthoneus toro n. gen., n. sp., paratype, ovigerous female (CL 3.4 mm) from Bocas del Toro, Caribbean coast of Panama, USNM 1145376: A, right (major) cheliped, lateral; B, same, carpus and chela, mesial; C, same, chela fingers; D, left (minor) cheliped, lateral; E, same, chela, mesial; F, second pereiopod, lateral; G, third pereiopod, lateral; H, same, dactylus; I, fifth pereiopod, lateral.
FIGURE 5. Triacanthoneus pacificus n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 5. Triacanthoneus pacificus n. gen., n. sp., holotype, ovigerous female (CL 2.8 mm) from Playa Venao, Pacific coast of Panama, USNM 1145374: A, frontal region, dorsal; B, carapace and frontal appendages, lateral; C, carapace, dorsal; D, mediodorsal tooth of carapace, lateral; E, distal rostrum, lateral; F, third maxilliped, lateral; G, second pleopod, appendix masculina and appendix interna; H, uropod, dorsal; I, same, posterior region of exopod; J, telson, dorsal.
FIGURE 2. Triacanthoneus toro n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 2. Triacanthoneus toro n. gen., n. sp., paratype, ovigerous female (CL 3.4 mm) from Bocas del Toro, Caribbean coast of Panama, USNM 1145376 [A–M]; paratype, ovigerous female (CL 3.4 mm) from the same locality, OUMNH.ZC 2010-01-005 [N]: A, frontal region, dorsal; B, carapace and frontal appendages, lateral; C, rostrum, lateral; D, carapace, dorsal; E, tooth on mesioventral carina of first segment of antennular peduncle, lateral; F, antennular flagella, dorsal; G, antenna, ventral; H, second pleopod, mesial; I, same, appendix masculina and appendix interna; J, uropod, dorsal; K, same, posterior region of exopod; L, telson, dorsal; M, same, posterior region; N, rostrum, lateral.
FIGURE 1. Triacanthoneus toro n. gen., n in A new genus and three new species of alpheid shrimps (Crustacea, Decapoda, Caridea) from the tropical American coasts
FIGURE 1. Triacanthoneus toro n. gen., n. sp., paratype, ovigerous female (CL 3.4 mm) from Bocas del Toro, Caribbean coast of Panama, USNM 1145376: habitus, lateral.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.