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9,330 results for “Approach”
Dataset for Accuracy of Grid-Connected Photovoltaic Power Plant: A Novel Approach Using Hybrid Variational Mode Decomposition and CNN-LSTM Model
<p>This research paper introduces a deep learning hybrid model employing Convolutional Neural Network Long Short-Term Memory (CNN-LSTM) for short-term photovoltaic (PV) solar energy forecasting.The proposed method integrates the Variational Mode Decomposition (VMD) algo-rithm with the CNN-LSTM model to predict PV power generation from a solar farm in Boussada, Algeria, from January 1, 2019, to December 31, 2020. The performance of the developed model is benchmarked against other deep learning models (VMD-CNN, VMD-LSTM, CNN-LSTM) across various time horizons (15, 30, and 60 minutes) to provide a comprehensive evaluation. Our findings exhibit greater performance of the developed model compared to other architectures, showcasing promising results in solar power forecasting. This research contributes to the main goal of enhancing EMS by providing accurate solar energy forecasts.</p>
Dataset of "A Monte Carlo Approach for Simulating Electrical Conductivity in Highly Porous Ceramic Composites: Impact of Internal Structure"
<p>3D structure of lanthanum strontium manganite and yttria-stabilized zirconia composites is predicted based on conductivity measurements using Monte Carlo 3D equivalent circuit network approach. Validation experimental impedance spectra; scanning electron micrographs; cross sections of model simulation or prediction (MSP).</p>
Dataset of "Structural Development on Ru and RuO2 Electrodes during Oxygen Evolution – an operando soft X-ray Absorption Spectroscopy Approach"
<p>Time resolved in-situ X-ray absorption spectroscopy (XAS) in soft X-ray region was used to characterize polarized interphase on Ru and Ru oxide based electrodes under oxygen evolution reaction (OER) conditions. XAS spectra were used to align the type and population of oxygen-containing species formed at electrodes at anodic potentials with local electronic structure of the OER catalyst. The operando soft XAS data do not identify a single rate limiting process at potentials negative to 1.4 V vs Ag/AgCl. Individual intermediates of the oxygen evolution process coexist at the surface at potentials preceding the actual OER onset. The OER is accompanied with redistribution of the electron density resulting for a start of the catalytic cycle reflecting increased population of oxygen vacancies at the surface. The observed spectral behavior indicates a confinement of the OER to the coordination unsaturated sites (cus) at the surface. </p>
Appendix - Potential COVID-19 test fraud detection: Findings from a pilot study comparing conventional and statistical approaches
<p>The methods and results of the publication "COVID-19 test fraud detection: Findings from a pilot study comparing conventional and statistical approaches" are described in more detail in this appendix. The R-syntax for the calculation is provided, as well as a pseudo data set with which the syntax can also be tested.</p>
Mappings for "Developing a Scalable Annotation Method for Large Datasets That Enhances Alarms With Actionability Data to Increase Informativeness: Mixed Methods Approach"
<p>Studies identified false and non-actionnable alarms as a factor for alarm fatigue in intensive care units.</p> <p>To annotate patient alarms, and analyse the alarm situation in intensive care units, we conceptualized and performed data mappings related to airway management and medication interventions. The mappings were based on information retrieved from the patient data management system (PDMS) and clinical expertise. For the airway management mappings, we used additional resources such as ISO 19223:2019 or ventilator instruction manuals. The mappings do not include patient data.</p> <p>As the mappings are generic, they could be used in other contexts than alarm annotation and research.</p> <p><strong>1. Respiratory Management Mappings:</strong></p> <ul> <li>General tables summarizing the 1) categories based on ISO 19223:2019 to describe respiratory support therapies (RSTs), 2) defining the invasiveness level of a RST and 3) listing the abbreviations used in the mappings</li> <li> <p>Tables including PDMS entries for airway devices (ADs), ventilation devices (VDs), and ventilation modes (VMs)</p> </li> <li> <p>Mapping of AD entries (from the PDMS) to defined categories</p> </li> <li> <p>Mapping of VDs, VMs, and ADs to defined RSTs, including information on invasiveness</p> </li> <li> <p>Table specifying suitable ventilation parameters in the context of each RST</p> </li> </ul> <p><strong>2. Medication Mappings:</strong></p> <ul> <li> <p>General tables providing information on physiological alarm conditions (PACs), interventions, routes, and techniques of administration of interest</p> </li> <li> <p>Mapping of routes of administration to techniques of administration including PDMS entries</p> </li> <li> <p>Mapping of active ingredients (including SNOMED CT Fully Specified Names and Identifiers), related PDMS information, and routes and techniques of administration to defined PAC and interventions</p> </li> </ul>
Exploring AdaBoost and Random Forests machine learning approaches for infrared pathology on unbalanced data sets
<p>The use of infrared spectroscopy to augment decision-making in histopathology is a promising direction for the diagnosis of many disease types. Hyperspectral images of healthy and diseased tissue, generated by infrared spectroscopy, are used to build chemometric models that can provide objective metrics of disease state. It is important to build robust and stable models to provide confidence to the end user. The data used to develop such models can have a variety of characteristics which can pose problems to many model-building approaches. Here we have compared the performance of two machine learning algorithms – AdaBoost and Random Forests – on a variety of non-uniform data sets. Using samples of breast cancer tissue, we devised a range of training data capable of describing the problem space. Models were constructed from these training sets and their characteristics compared. In terms of separating infrared spectra of cancerous epithelium tissue from normal-associated tissue on the tissue microarray, both AdaBoost and Random Forests algorithms were shown to give excellent classification performance (over 95% accuracy) in this study. AdaBoost models were more robust when datasets with large imbalance were provided. The outcomes of this work are a measure of classification accuracy as a function of training data available, and a clear recommendation for choice of machine learning approach.</p>
A novel approach to the detection of unusual mitochondrial protein change suggests hypometabolism of ancestral simians: Supplemental Files
<p><strong>Supplementary Fig. S1</strong>: θ<sub>evo</sub> calculated for each analyzed edge for specific OXPHOS complexes. Analyses were performed as in fig. 1F, except that SPCSs calculated from mtDNA-encoded protein positions in Complex I, Complex III, Complex IV, or Complex V were used to generate θevo values.</p> <p><strong>Supplementary Fig. S2</strong>: Mammalian orders differ in their propensity for potentially efficacious mitochondrial protein substitutions within specific OXPHOS complexes (median calculations). Analysis was performed as in fig. 2A, except that θ<sub>evo</sub> values were obtained by analysis of mtDNA-encoded Complex I, Complex III, Complex IV, or Complex V polypeptides.</p> <p><strong>Supplementary Fig. S3</strong>: Mammalian orders differ in their propensity for potentially efficacious mitochondrial protein substitutions within specific OXPHOS complexes (median confidence intervals). Analysis was performed as in (<em>A</em>) fig. 2B or (<em>B</em>) fig. 2C, except that θ<sub>evo</sub> values were obtained by analysis of mtDNA-encoded Complex I, Complex III, Complex IV, or Complex V proteins.</p> <p><strong>Supplementary Fig. S4</strong>: Mammalian families differ in their propensity for potentially efficacious mitochondrial protein substitutions at specific OXPHOS complexes (median calculations). Analysis was performed as in fig. 3A, except that θ<sub>evo</sub> values were obtained by analysis of mtDNA-encoded Complex I, Complex III, Complex IV, or Complex V subunits.</p> <p><strong>Supplementary Fig. S5</strong>: Mammalian families differ in their propensity for potentially efficacious mitochondrial protein substitutions at specific OXPHOS complexes (median confidence intervals ordered by lower 90% median confidence limit). Analysis was performed as in fig. 3B, except that θ<sub>evo</sub> values were obtained by analysis of mtDNA-encoded Complex I, Complex III, Complex IV, or Complex V proteins.</p> <p><strong>Supplementary Fig. S6</strong>: Mammalian families differ in their propensity for potentially efficacious mitochondrial protein substitutions at specific OXPHOS complexes (median confidence intervals ordered by upper 90% median confidence limit). Analysis was performed as in fig. 3C, except that θ<sub>evo</sub> values were obtained by analysis of mtDNA-encoded Complex I, Complex III, Complex IV, or Complex V polypeptides.</p> <p>---</p> <p><strong>Supplementary File 1</strong>: All predicted protein substitutions along all edges at positions containing less than 2% gaps across input and ancestral sequences are listed, along with associated taxonomy information, TSS, and branch length. All alignment positions refer to Bos taurus reference sequences.</p> <p><strong>Supplementary File 2</strong>: The TSS calculated for each mitochondrial protein alignment position. All alignment positions refer to Bos taurus reference sequences.</p> <p><strong>Supplementary File 3</strong>: SPCS and θevo outputs are provided for analyses across all mitochondria-encoded positions, as well as for focused analyses of specific OXPHOS complexes and individual proteins.</p> <p><strong>Supplementary File 4</strong>: A GenBank flat file containing RefSeq entries for mammalian mtDNAs, as well as the entry for the reptile Anolis punctatus.</p> <p><strong>Supplementary File 5</strong>: A maximum likelihood inferred tree generated by a RAxML-NG analysis of concatenated and aligned protein coding sequences from mammalian and Anolis punctatusmtDNAs.</p> <p><strong>Supplementary File 6</strong>: Bootstrap replicates were generated from the alignment of concatenated protein coding sequences. Felsenstein’s Bootstrap Proportions (Felsenstein 1985) were calculated and used to label the maximum likelihood inferred tree of mammalian mtDNAs.</p> <p><strong>Supplementary File 7</strong>: Bootstrap replicates were generated using concatenated mammalian mtDNA coding sequences. Transfer Bootstrap Expectations (Lemoine 2018) were calculated and used to label the maximum likelihood inferred tree of mammalian mtDNAs.</p> <p><strong>Supplementary File 8</strong>: PAGAN tree output produced using aligned amino acid sequences and the rooted maximum likelihood inferred tree as input.</p>
Neuroanatomical correlates of approach-avoidance conflict (fMRI)
Open the record for dataset details and reuse information.
Models for "A data-driven approach to studying changing vocabularies in historical newspaper collections"
<p>NOTE: This is a badly rendered version of the README within the archive.</p> <p><strong>A data-driven approach to studying changing vocabularies in historical newspaper collections</strong></p> <p>Simon Hengchen,* Ruben Ros,** Jani Marjanen,*** Mikko Tolonen***</p> <p>*<a href="https://spraakbanken.gu.se/en/about/staff/simon">Språkbanken Text</a>, University of Gothenburg, Sweden and <a href="https://iguanodon.ai">iguanodon.ai</a>, Belgium: firstname.lastname@gu.se<br> **<a href="https://www.c2dh.uni.lu/people/ruben-ros">Centre for Contemporary and Digital History (C2DH)</a>, University of Luxembourg: firstname.lastname@uni.lu<br> ***<a href="https://www.helsinki.fi/en/researchgroups/computational-history">COMHIS</a>, University of Helsinki: <a href="mailto:firstname.lastname@helsinki.fi">firstname.lastname@helsinki.fi</a>;</p> <p>These are the supplementary materials for the DH2019 paper <em>A data-driven approach to the changing vocabulary of the ‘nation’ in English, Dutch, Swedish and Finnish newspapers, 1750-1950</em>, as well as the 2021 Digital Scholarship in the Humanities publication available in OpenAccess: <a href="https://academic.oup.com/dsh/article/36/Supplement_2/ii109/6421793">https://academic.oup.com/dsh/article/36/Supplement_2/ii109/6421793</a>. If you end up using whole or parts of this resource, please use the following citation(s):</p> <ul> <li>Hengchen, S., Ros, R., and Marjanen, J. (2019). A data-driven approach to the changing vocabulary of the 'nation' in English, Dutch, Swedish and Finnish newspapers, 1750-1950. In <em>Proceedings of the Digital Humanities (DH) conference 2019, Utrecht, The Netherlands</em></li> </ul> <p>and/or:</p> <ul> <li>Hengchen, S., Ros, R., Marjanen, J. and Tolonen, M., 2021. A data-driven approach to studying changing vocabularies in historical newspaper collections. Digital Scholarship in the Humanities, 36(Supplement_2), pp.ii109-ii126.</li> </ul> <p>or alternatively use one of the following <code>bib</code>s:</p> <pre><code>@inproceedings{hengchen2019nation, title="A data-driven approach to the changing vocabulary of the 'nation' in {E}nglish, {D}utch, {S}wedish and {F}innish newspapers, 1750-1950.", author={Hengchen, Simon and Ros, Ruben and Marjanen, Jani}, year={2019}, address = "Utrecht, The Netherlands", booktitle={Proceedings of the Digital Humanities (DH) conference 2019} }</code></pre> <pre><code>@article{hengchen2021data, title={A data-driven approach to studying changing vocabularies in historical newspaper collections}, author={Hengchen, Simon and Ros, Ruben and Marjanen, Jani and Tolonen, Mikko}, journal={Digital Scholarship in the Humanities}, volume={36}, number={Supplement\_2}, pages={ii109--ii126}, year={2021}, publisher={Oxford University Press} }</code></pre> <p> </p> <p>Files</p> <p>This archive contains two folders -- one per diachronic representation method -- as well as this README. The folders each contain four folders, which contain the models for their respective languages. As can be inferred from the small datasize, most of the earlier models are not reliable and should not be used, but are still made available. This work is licensed under a <a href="http://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International License</a>.</p> <p><strong>Source material</strong></p> <p>Finnish:</p> <p>The models were created with data from the Finnish Sub-corpus of the Newspaper and Periodical Corpus of the National Library of Finland (National Library of Finland, 2011). We used everything in the corpus.</p> <p>Filesizes:</p> <pre><code>[simon@taito-login3 SGNS]$ du -h fi* 12M fi_1820_SGNS_corpus_file.gensim 89M fi_1840_SGNS_corpus_file.gensim 797M fi_1860_SGNS_corpus_file.gensim 7.0G fi_1880_SGNS_corpus_file.gensim 22G fi_1900_SGNS_corpus_file.gensim</code></pre> <p>Swedish:</p> <p>The models were created with data from the Kubhist 2 corpus (Språkbanken) -- more precisely, the data dumps available at <a href="https://spraakbanken.gu.se/lb/resurser/meningsmangder/">https://spraakbanken.gu.se</a>. After a manual evaluation of Swedish embeddings trained without pre-processing seemed to show that the embeddings were of low quality, we retrained models, only keeping sentences that were at least 10 tokens long and were constituted of at least 50% of lemmas as per the KORP processing pipeline (Borin et al, 2012).</p> <p>Filesizes:</p> <pre><code>[simon@taito-login3 SGNS]$ du -h sv* 1.6M sv_1740_SGNS_corpus_file.gensim 44M sv_1760_SGNS_corpus_file.gensim 124M sv_1780_SGNS_corpus_file.gensim 228M sv_1800_SGNS_corpus_file.gensim 678M sv_1820_SGNS_corpus_file.gensim 1.6G sv_1840_SGNS_corpus_file.gensim 4.5G sv_1860_SGNS_corpus_file.gensim 6.5G sv_1880_SGNS_corpus_file.gensim 113M sv_1900_SGNS_corpus_file.gensim</code></pre> <p>Dutch:</p> <p>The models were created with data from the Delpher newspaper archive (Royal Dutch Library, 2017), through data dumps for newspapers until and including 1876, and through API hits for articles from 1877 to 1899 (included).</p> <ul> <li>For anything pre-1877 we discarded full texts that had, in the metadata, anything else than exclusively <code>nl</code> or <code>NL</code> as a language tag.</li> <li>For the full texts between 1877 and 1899: we queried the API for all items in the “artikel” category that contained the determiner <code>de</code>.</li> </ul> <p>Our assumption was that most articles should contain <code>de</code> at least once, and those that didn't were too short to be deemed interesting. A subsequent study showed that was not exactly the case, but we were reassured by the fact that left-out articles were probably "shipping or financial reports" (thanks go to Melvin Wevers). We also did not include the colonial newspapers for our embeddings. This is motivated by our research questions. A list of removed newspapers is available on request.</p> <p>Filesizes:</p> <pre><code>[simon@taito-login3 SGNS]$ du -h nl* 6.8M nl_1620_SGNS_corpus_file.gensim 7.9M nl_1640_SGNS_corpus_file.gensim 43M nl_1660_SGNS_corpus_file.gensim 78M nl_1680_SGNS_corpus_file.gensim 138M nl_1700_SGNS_corpus_file.gensim 243M nl_1720_SGNS_corpus_file.gensim 287M nl_1740_SGNS_corpus_file.gensim 431M nl_1760_SGNS_corpus_file.gensim 825M nl_1780_SGNS_corpus_file.gensim 1.2G nl_1800_SGNS_corpus_file.gensim 1.8G nl_1820_SGNS_corpus_file.gensim 3.1G nl_1840_SGNS_corpus_file.gensim 5.2G nl_1860_SGNS_corpus_file.gensim 13G nl_1880_SGNS_corpus_file.gensim</code></pre> <p>English:</p> <p>The models were created with data from the British Library Newspapers collection (<a href="https://www.gale.com/intl/primary-sources/british-library-newspapers%5D">link</a>), the Nichols collection (<a href="https://www.gale.com/intl/c/17th-and-18th-century-burney-newspapers-collection">link</a>), and the Burney collection (<a href="https://www.gale.com/intl/c/17th-and-18th-century-nichols-newspapers-collection">link</a>). We used everything in the corpora. For English, only SGNS_ALIGN models are available. We thank Gale Cengage for their help with this project.</p> <p>Filesizes:</p> <pre><code>[simon@taito-login3 SGNS]$ du -h en* 4.3M en_1620_SGNS_corpus_file.gensim 11M en_1640_SGNS_corpus_file.gensim 11M en_1660_SGNS_corpus_file.gensim 106M en_1680_SGNS_corpus_file.gensim 409M en_1700_SGNS_corpus_file.gensim 1.7G en_1720_SGNS_corpus_file.gensim 834M en_1740_SGNS_corpus_file.gensim 2.4G en_1760_SGNS_corpus_file.gensim 5.3G en_1780_SGNS_corpus_file.gensim 5.5G en_1800_SGNS_corpus_file.gensim 15G en_1820_SGNS_corpus_file.gensim 42G en_1840_SGNS_corpus_file.gensim 65G en_1860_SGNS_corpus_file.gensim 88G en_1880_SGNS_corpus_file.gensim 26G en_1900_SGNS_corpus_file.gensim 21G en_1920_SGNS_corpus_file.gensim 6.3G en_1940_SGNS_corpus_file.gensim</code></pre> <p><strong>Word embeddings</strong></p> <p>For every language, we train diachronic embeddings as follows. We divide the data in 20-year time bins. We train SGNS_UPDATE and SGNS_ALIGN models. Current research on German (Schlechtweg et al, 2019) and English (Shoemark et al, 2019) indicates you should use the SGNS_ALIGN models. <strong>For EN, FI, NL, no tokens (including punctuation) were removed nor altered, aside from lowercasing</strong>. For SV, see above. Parameters are as follows: SGNS architecture (Mikolov et al 2013), window size of 5, frequency threshold of 100, 5 epochs, 300 dimensions (or 100 for EN).</p> <ul> <li>For SGNS_UPDATE: We first train a model for the first time bin <code>t</code>. To train the model for <code>t+1</code>, we use the <code>t</code> model to initialise the vectors for <code>t+1</code>, set the learning rate to correspond to the end learning rate of <code>t</code>, and continue training. This approach, closely following Kim et al (2014), has the advantage of avoiding the need for post-training vector space alignment.</li> </ul> <p>The Python snippet below, which makes use of gensim (Rehurek and Sojka, 2010), illustrates the approach. Special thanks go to Sara Budts.</p> <pre><code>## dict_files[key] is a dictionary with double decades as keys and a corresponding LineSentence object as value: https://radimrehurek.com/gensim/models/word2vec.html#gensim.models.word2vec.LineSentence count = 0 for key in sorted(list(dict_files.keys())): if count == 0: ## This is the first model. model = gensim.models.Word2Vec(corpus_file=dict_files[key], min_count=100, sg=1 ,size=300, workers=64, seed=1830, iter=5) model.save(os.path.join(data_path_final,"KIM",lang+"_"+str(timebin)+".w2v")) print("Model saved, on to the next\n") count += 1 if count > 0: ## this is for the subsequent models. print("model for double decade starting in",str(key)) model = gensim.models.Word2Vec.load(os.path.join(data_path_final,"KIM",lang+"_"+str(timebin-20)+".w2v")) print("previous model loaded") model.build_vocab(corpus_file=dict_files[key], update=True) model.train(corpus_file=dict_files[key], total_words = model.corpus_count, total_examples = model.corpus_count, start_alpha = model.alpha, end_alpha = model.min_alpha, epochs=model.epochs) model.save(os.path.join(data_path_final,"KIM",lang+"_"+str(timebin)+".w2v")) </code></pre> <ul> <li>For SGNS_ALIGN: We independently train models for all time bins. The models in this repository are <em>NOT</em> aligned, leaving you the choice of how to align them. For example, <a href="https://gist.github.com/quadrismegistus/09a93e219a6ffc4f216fb85235535faf">here</a> is a link to code by Ryan Heuser to do just that. Models were trained with the <code>count == 0</code> scenario in the snippet above.</li> </ul> <p><strong>Acknowledgments</strong></p> <p>This work has been supported by the European Union's Horizon 2020 research and innovation programme under grant 770299 <a href="https://www.newseye.eu/">NewsEye</a>. Specials thanks go to the data providers/collection-holding institutions: the Finnish Language Bank, the Swedish Language Bank, the Royal Dutch Library, and Gale Cengage.</p> <p>The authors would like to thank the following persons and group, listed alphabetically: Antoine Doucet, Antti Kanner, Axel-Jean Caurant, Dominik Schlechtweg, Eetu Mäkelä, Elaine Zosa, Estelle Bunout, Haim Dubossarsky, Joris van Eijnatten, Krister Lindén, Lars Borin, Lidia Pivovarova, Melvin Wevers, Nina Tahmasebi, Sara Budts, Senka Drobac, Tanja Säily, the COMHIS group, and Steven Claeyssens. Computational resources were provided by CSC – IT Center for Science Ltd.</p> <p><strong>References</strong></p> <p>Borin, L., Forsberg, M., Roxendal, J. (2012). Korp-the corpus infrastructure of Spräkbanken,in: LREC. pp. 474–478.</p> <p>Kim, Y., Chiu, Y.I., Hanaki, K., Hegde, D. and Petrov, S. (2014). Temporal Analysis of Language through Neural Language Models. <em>ACL 2014</em>, p.61.</p> <p>Mikolov, T., Chen, K., Corrado, G. and Dean, J. (2013). Efficient estimation of word representations in vector space. <em>arXiv preprint arXiv:1301.3781</em>.</p> <p>National Library of Finland (2011). <em>The Finnish Sub-corpus of the Newspaper and Periodical Corpus of the National Library of Finland, Kielipankki Version</em> [text corpus]. Kielipankki. Retrieved from <a href="http://urn.fi/urn:nbn:fi:lb-2016050302">http://urn.fi/urn:nbn:fi:lb-2016050302</a>.</p> <p>Rehurek, R. and Sojka, P. (2010). Software framework for topic modelling with large corpora. In <em>Proceedings of the LREC 2010 Workshop on New Challenges for NLP Frameworks</em>.</p> <p>Royal Dutch Library (2017). <em>Delpher open krantenarchief (1.0)</em>. Den Haag, 2017.</p> <p>Schlechtweg D., Hätty A, del Tredici M., and Schulte im Walde S. (2019). A Wind of Change: Detecting and Evaluating Lexical Semantic Change across Times and Domains. In <em>Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)</em>, Florence, Italy. ACL.</p> <p>Shoemark, P., Liza, F.F., Nguyen, D., Hale, S. and McGillivray, B. (2019). Room to Glo: A Systematic Comparison of Semantic Change Detection Approaches with Word Embeddings. In <em>Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP) (pp. 66-76)</em>, Hong Kong.</p> <p>Språkbanken. <em>The Kubhist Corpus</em>. Department of Swedish, University of Gothenburg. <a href="https://spraakbanken.gu.se/korp/?mode=kubhist">https://spraakbanken.gu.se/korp/?mode=kubhist</a>.</p>
Dataset-Gender bias in magazines oriented to men and women: a computational approach
<p>This is the dataset associated with the research article 'Gender bias in magazines oriented to men and women: a computational approach' https://arxiv.org/abs/2011.12096</p>
Supplementary data for the article: Future environmental impacts of metals: a systematic review of impact trends, modelling approaches, and challenges
<p>This repository provides the supplementary data to the paper titled <a href="https://doi.org/10.1016/j.resconrec.2024.107572" target="_blank" rel="noopener"><em>"Future environmental impacts of metals: a systematic review of impact trends, modelling approaches, and challenges"</em></a>, published 2024 in <em>Resources, Conservation and Recycling</em>.</p> <h4><strong>Contents</strong></h4> <p>The repository is split in 3 parts and comprises the following files (more details are provided in the <em>README.md</em>):</p> <p><strong>A_Database of reviewed studies:</strong></p> <ul> <li>contains the detailed review data, meant for readers to use as an overview file to gather studies relevant to them. It also includes an overview of all data sources that the reviewed studies used.</li> </ul> <p><strong>B_Scientific supplement to paper:</strong></p> <ul> <li>Contains all data relevant to the related publication Harpprecht et al. (2024), such as studies screened , FAIR data analysis, or analyzed impact trends.</li> </ul> <p><strong>C_Data for figures in paper:</strong></p> <ul> <li>This file contains all the data for Figures 3, 4 and 5 in tabular form, representing impact trends, scenario variables, scenario modelling approaches and data sources used.</li> </ul> <h4><strong>Summary</strong></h4> <p>These files allow to reproduce the results of our study. In this work, we systematically reviewed studies which assessed future environmental impacts of metal supply chains. Our review yielded 40 publications covering 15 metals: copper, iron, aluminium, nickel, zinc, lead, cobalt, lithium, gold, manganese, neodymium, dysprosium, praseodymium, terbium, and titanium. We evaluated their results regarding future impact trends, and their methods, i.e., modelling approaches, scenario variables, and data sources of scenario variables. We identified 15 scenario variables. The most common variables are background electricity mix, ore grade, recycling shares, demand, and energy efficiency. We identified 229 unique data sources for the reviewed scenario variables.</p> <h4><strong>Related publication</strong></h4> <p>More details on the data and its interpretation as well as the scientific context are provided in the publication itself:</p> <p><a href="https://doi.org/10.1016/j.resconrec.2024.107572" target="_blank" rel="noopener">Harpprecht, C., Miranda Xicotencatl, B., van Nielen, S., van der Meide, M., Li, C. , Li, Z., Tukker, A., Steubing, B. (2024). <em>Future environmental impacts of metals: a systematic review of impact trends, modelling approaches, and challenges.</em> Resources, Conservation and Recycling.</a></p> <h4><strong>Funding </strong></h4> <p>Carina Harpprecht received funding from the Energy Program of the German Aerospace Center in 2022. Zhijie Li received funding from the European Institute of Innovation and Technology (EIT) under the project Valomag (Project No. 14049).</p> <h4><strong>License</strong></h4> <p>CC-BY 4.0 license for DLR (German Aerospace Center)</p>
Experimental determination of the hafnium L-subshell fundamental parameters using the holistic approach
<p>This file contains the experimentally determined atomic fundamental parameters for the hafnium L-shells as described in "Experimental determination of the hafnium L-subshell fundamental parameters using the holistic approach" by N. Wauschkuhn, H. Gundlach and P. Hönicke. Fundamental parameters in this file: L-subshell fluorescence yields, L-shell Coster-Kronig factors, L-shell Auger yields, L-subshell photo ionization cross sections up to 23 keV, L-subshell fluorescence prodution cross sections up to 23 keV </p>
Public charging requirements for battery electric long-haul trucks in Europe: a trip chain approach
<p>Contact details:</p> <p>wasim.shoman at chalmers.se </p> <p>waahh7 at gmail com</p> <p><strong>Abstract of the research:</strong></p> <p>Heavy-duty vehicles (HDV) account for less than 2-5% of the vehicles on the road in Europe but contribute to 15-22% of CO<sub>2</sub> emissions from road transport. Battery electric trucks (BETs) could be deployed on a large scale to reduce greenhouse gas emissions. However, they require sufficient charging infrastructure to support long-haul operations. Therefore, assessing the required charging locations, energy, and power requirements is critical. We use a trip-chain-based model to derive charging requirements for BETs in long-haul operation (travel times over 4.5 hours or over 360 km distance traveled) for Europe in 2030. We convert an origin-destination (OD) matrix into trip chains combined with European truck driving regulations to derive break and rest stops. We show that an average charging area (defined as a 25´25 km<sup>2</sup> square with each square that could include multiple charging stations and parking lots of multiple charging points) needs to have four to five times more overnight than megawatt charging points. We estimate that about 40,000 overnight charging points (50-100 kW, combined charging system, CCS) and about 9,000 megawatt charging system (MCS, 0.7 – 1.2 MW) points are required for 15% of trucks as BETs in long-haul operation. On average, 8 and 2 CCS and MCS chargers are required per charging area, and each MCS and CCS serve, on average, 11 and 2 BETs daily, respectively. Public charging entails about 110 GWh daily electricity demand in each charging area. The model can be applied to any region with similar data. Future work can consider improving the queuing model, assumptions regarding regional differences of BET penetration, and heterogeneity of truck sizes and utilization.</p> <p><strong>The methodology:</strong></p> <p>We develop a method to place charger locations in Europe that meets the demand of goods movements between regions while following EU driving regulations. The spatial resolution of regions is based on the Nomenclature of Territorial Units for Statistics (NUTS)-3 regions. The annual flow of goods transported by HDV is identified using the ETISplus dataset. We develop a travel pattern for the HDV to convert flows into trip chains with the traversed LHT number. The traveled routes between the regions are mapped. Locations of short period stops, i.e., breaks, and long period stops, i.e., rests, are allocated/assigned along traveled routes to construct a trip chain for each moving HDV. Break and rest locations for all moving HDVs are aggregated to suggest energy requirements if assuming these HDVs are BETs. The aggregated energy to charge stopped BETs is used to identify the number and type of chargers within each suggested charging station.</p> <p><strong>Datasets details</strong></p> <p>The presented datasets contain spatial information for generating charger stations with specifications according to charging needs. The datasets contain information about: Transport network model and edges, Transported flows, routes and flow center information data, region centers, and Planned transport infrastructure. </p> <p>The first dataset titled 'ChargerLocations' contains information about the locations of suggested charging stations, the number and type of chargers, and the number of visited electrified trucks in 2030. It is a shapefile with the following details for its fields:</p> <table> <tbody> <tr> <td>Name</td> <td>Description</td> <td>Data Type</td> <td>Unit</td> </tr> <tr> <td>DTN30/MainDTN</td> <td> number of electrified trucks in 2030</td> <td>integer </td> <td>number</td> </tr> <tr> <td>ChE30</td> <td> charged energy in Mega watt-hour from all charging (fast and slow)</td> <td>float</td> <td> Mega watt-hour</td> </tr> <tr> <td>ChERM</td> <td> charged energy in Megawatt hour with slow charging only (rest)</td> <td>float</td> <td> Mega watt-hour</td> </tr> <tr> <td>MDTN_R</td> <td> number of electrified trucks using slow chargers (rest)</td> <td>integer </td> <td>number</td> </tr> <tr> <td>ChEBM</td> <td> charged energy in Megawatt hour with fast charging only (break)</td> <td>float</td> <td> Mega watt-hour</td> </tr> <tr> <td>MDTN_B</td> <td> number of electrified trucks using fast chargers (break)</td> <td>integer </td> <td>number</td> </tr> <tr> <td>NSCh2pD</td> <td> number of slow chargers</td> <td>integer </td> <td>number</td> </tr> <tr> <td>NFCh30m</td> <td> number of fast chargers</td> <td>integer </td> <td>number</td> </tr> <tr> <td>TotCha</td> <td> Total number of chargers</td> <td>integer </td> <td>number</td> </tr> </tbody> </table> <p> </p> <p>The second dataset titled (RestandBreaksPoints.shp) with information about the rest and break point locations. The dataset includes detailes about stop type, number of stopped trucks, and required charged energy. The dataset is a shapefile with "shp" format. </p> <table> <tbody> <tr> <td> <p><strong>Name</strong></p> </td> <td> <p><strong>Description</strong></p> </td> <td> <p><strong>Data Type</strong></p> </td> <td> <p><strong>Unit</strong></p> </td> </tr> <tr> <td> <p>ID_origin_region</p> </td> <td> <p>Unique record ID with 9 digits decoding NUTS-3 region of origin. First 3 digits decode NUTS-0, first 5 decode NUTS-1, first 7 decode NUTS-3</p> </td> <td> <p>Integer (9digits)</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Name_origin_region</p> </td> <td> <p>National name of NUTS-3 region of origin</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>ID_destination_region</p> </td> <td> <p>Unique record ID with 9 digits decoding NUTS-3 code of destination region. First 3 digits decode NUTS-0, first 5 decode NUTS-1, first 7 decode NUTS-3</p> </td> <td> <p>Integer (9digits)</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Name_destination_<br> region</p> </td> <td> <p>National name of NUTS-3 destination region</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Rest</p> </td> <td> <p>A value of ”1” indicates a rest stop</p> </td> <td> <p>Boolean</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Break</p> </td> <td> <p>A value of ”1” indicates a break stop</p> </td> <td> <p>Boolean</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>ChaDisKM</p> </td> <td> <p>Charged range within a trip for stopped the truck</p> </td> <td> <p>Float</p> </td> <td> <p>km</p> </td> </tr> <tr> <td> <p>ChaEnekWh</p> </td> <td> <p>Charged energy within a trip for stopped the truck</p> </td> <td> <p>Float</p> </td> <td> <p>KWh</p> </td> </tr> <tr> <td> <p>MainDTN</p> </td> <td> <p>Number of stopped trucks for the main electrification scenario (15%)</p> </td> <td> <p>Float</p> </td> <td> <p>number</p> </td> </tr> <tr> <td> <p>ChE30M</p> </td> <td> <p>Charged energy for all stopped trucks</p> </td> <td> <p>Float</p> </td> <td> <p>MWh</p> </td> </tr> <tr> <td> <p>ChERM</p> </td> <td> <p>Charged energy for the trucks stopping for rest</p> </td> <td> <p>Float</p> </td> <td> <p>MWh</p> </td> </tr> <tr> <td> <p>MDTN_R</p> </td> <td> <p>Number of trucks stopping for rest</p> </td> <td> <p>Float</p> </td> <td> <p>number</p> </td> </tr> <tr> <td> <p>ChEBM</p> </td> <td> <p>Charged energy for the trucks stopping for break</p> </td> <td> <p>Float</p> </td> <td> <p>MWh</p> </td> </tr> <tr> <td> <p>MDTN_B</p> </td> <td> <p>Number of trucks stopping for break</p> </td> <td> <p>Float</p> </td> <td> <p>number</p> </td> </tr> <tr> <td> <p>geometry</p> </td> <td> <p>X, Y coordinates</p> </td> <td> <p>geometry</p> </td> <td> <p>-</p> </td> </tr> </tbody> </table> <p> </p> <p> </p> <p>The following dataset titled 'flowFile' with information about the transported flow between regions and the transported routes. The dataset is in "CSV" format. Details for its fields are explained as follows (source: https://www.sciencedirect.com/science/article/pii/S235234092101060X):</p> <table> <tbody><tr> <th> <p><strong>Name</strong></p> </th> <th> <p><strong>Description</strong></p> </th> <th> <p><strong>Data Type</strong></p> </th> <th> <p><strong>Unit</strong></p> </th> </tr> </tbody><tbody> <tr> <td> <p>ID_origin_region</p> </td> <td> <p>Unique record ID with 9 digits decoding NUTS-3 region of origin. First 3 digits decode NUTS-0, first 5 decode NUTS-1, first 7 decode NUTS-3</p> </td> <td> <p>Integer (9digits)</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Name_origin_region</p> </td> <td> <p>National name of NUTS-3 region of origin</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>ID_destination_region</p> </td> <td> <p>Unique record ID with 9 digits decoding NUTS-3 code of destination region. First 3 digits decode NUTS-0, first 5 decode NUTS-1, first 7 decode NUTS-3</p> </td> <td> <p>Integer (9digits)</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Name_destination_<br> region</p> </td> <td> <p>National name of NUTS-3 destination region</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Edge_path_E_road</p> </td> <td> <p>List of the <em>network edge IDs</em> of the shortest path between the O-D pair, determined with Dijkstra's algorithm</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Distance_from_origin_<br> region_to_E_road</p> </td> <td> <p>Distance from the geometric centre of the origin region to the closest network node</p> </td> <td> <p>Float</p> </td> <td> <p>Kilometres [km]</p> </td> </tr> <tr> <td> <p>Distance_within_E_<br> road</p> </td> <td> <p>Distance of the shortest edge path between the O-D pair</p> </td> <td> <p>Float</p> </td> <td> <p>Kilometres [km]</p> </td> </tr> <tr> <td> <p>Distance_from_E_<br> road_to_destination_<br> region</p> </td> <td> <p>Distance from the geometric centre of the destination region to the closest network node</p> </td> <td> <p>Float</p> </td> <td> <p>Kilometres [km]</p> </td> </tr> <tr> <td> <p>Total_distance</p> </td> <td> <p>Sum of <em>Distance_from_origin_region_to_E_road, Distance_within_E_road</em> and <em>Distance_from_E_road_to_destination_region</em></p> </td> <td> <p>Float</p> </td> <td> <p>Kilometres [km]</p> </td> </tr> <tr> <td> <p>Traffic_flow_trucks_<br> 2010</p> </td> <td> <p>Number of trucks that drive between the O-D pair in 2010</p> </td> <td> <p>Float</p> </td> <td> <p>Number of trucks</p> </td> </tr> <tr> <td> <p>Traffic_flow_trucks_<br> 2019</p> </td> <td> <p>Number of trucks that drive between the O-D pair after they had been scaled to 2019</p> </td> <td> <p>Float</p> </td> <td> <p>Number of trucks</p> </td> </tr> <tr> <td> <p>Traffic_flow_trucks_<br> 2030</p> </td> <td> <p>Number of trucks that drive between the O-D pair according to the forecast for 2030</p> </td> <td> <p>Float</p> </td> <td> <p>Number of trucks</p> </td> </tr> <tr> <td> <p>Traffic_flow_tons_<br> 2010</p> </td> <td> <p>Number of tons that are transported between the O-D pair in 2010 according to ETISplus</p> </td> <td> <p>Integer</p> </td> <td> <p>Tons [t]</p> </td> </tr> <tr> <td> <p>Traffic_flow_tons_<br> 2019</p> </td> <td> <p>Number of tons that are transported between the O-D pair after they had been scaled to 2019</p> </td> <td> <p>Integer</p> </td> <td> <p>Tons [t]</p> </td> </tr> <tr> <td> <p>Traffic_flow_tons_<br> 2030</p> </td> <td> <p>Number of tons that are transported between the O-D pair according to the forecast for 2030</p> </td> <td> <p>Integer</p> </td> <td> <p>Tons [t]</p> </td> </tr> </tbody> </table> <p>Description of variables used in the NUTS-3 regions dataset (02_NUTS-3-Regions). The dataset is in "CSV" format. (source: https://www.sciencedirect.com/science/article/pii/S235234092101060X))</p> <table> <tbody><tr> <th> <p><strong>Name</strong></p> </th> <th> <p><strong>Description</strong></p> </th> <th> <p><strong>Data Type</strong></p> </th> <th> <p><strong>Unit</strong></p> </th> </tr> </tbody><tbody> <tr> <td> <p>Network_Node_ID</p> </td> <td> <p>Unique network node ID</p> </td> <td> <p>Integer (6 digits)</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Network_Node_X</p> </td> <td> <p>Longitude of the location of network node</p> </td> <td> <p>Float</p> </td> <td> <p>Degrees</p> </td> </tr> <tr> <td> <p>Network_Node_Y</p> </td> <td> <p>Latitude of the location of network node</p> </td> <td> <p>Float</p> </td> <td> <p>Degrees</p> </td> </tr> <tr> <td> <p>ETISplus_Zone_ID</p> </td> <td> <p>ID of the NUTS-3 region in which the network node is located</p> </td> <td> <p>Integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Country</p> </td> <td> <p>Unique country code of the country in which the network node is located (country codes are defined by ETISplus)</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> </tbody> </table> <p>Description of variables used in the network edges list (Updated_04_network-edges). The dataset is in "CSV" format. (source: https://www.sciencedirect.com/science/article/pii/S235234092101060X))</p> <table> <tbody><tr> <th> <p><strong>Name</strong></p> </th> <th> <p><strong>Description</strong></p> </th> <th> <p><strong>Data Type</strong></p> </th> <th> <p><strong>Unit</strong></p> </th> </tr> </tbody><tbody> <tr> <td> <p>Network_Edge_ID</p> </td> <td> <p>Unique edge ID</p> </td> <td> <p>Integer<br> (7 digits)</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Manually_Added</p> </td> <td> <p>Determines whether an edge had been manually added to the network (1) or not (0)</p> </td> <td> <p>Binary-integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Distance</p> </td> <td> <p>Length of the network edge</p> </td> <td> <p>Float</p> </td> <td> <p>Kilometres [km]</p> </td> </tr> <tr> <td> <p>Network_Node_A_ID</p> </td> <td> <p>Unique ID of the network node that defines one end point of the network edge</p> </td> <td> <p>Integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Network_Node_B_ID</p> </td> <td> <p>Unique ID of the network node that defines one end point of the network edge</p> </td> <td> <p>Integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>Traffic_flow_trucks_2019</p> </td> <td> <p>Number of trucks that drive on the edge in 2019 (both highway directions combined)</p> </td> <td> <p>Float</p> </td> <td> <p>Number of trucks</p> </td> </tr> <tr> <td> <p>Traffic_flow_trucks_2030</p> </td> <td> <p>Number of trucks that drive on the edge in 2030 (both highway directions combined)</p> </td> <td> <p>Float</p> </td> <td> <p>Number of trucks</p> </td> </tr> </tbody> </table> <p> </p> <p> </p>
Organic Matter, Geochemical, Visible Spectrocolorimetric Properties, Radiocesium Properties, and Grain Size of Potential Source Material, Target Sediment Core Layers and Laboratory Mixtures for Conducting Sediment Fingerprinting Approaches in the Mano Dam Reservoir (Hayama Lake) Catchment, Fukushima Prefecture, Japan
<p>The current dataset was compiled to study sediment fingerprintings practices, i.e tracer selection and contribution modelling. Organic matter, elemental geochemistry, visible difuse spectrocolorimetric properties, radiocesium properties, and grain size were analysed were analysed in potential source material that may supply sediment to coastal rivers, here the upper part of the Mano river, draining the main Fukushima radioactive pollution plume (Japan). Four potential soil source materials (<em>n</em> = 68) were considered: undecontaminated cropland (<em>n</em> = 24), as non-decontaminated soil before the application of local decontamination policies, remediated cropland (<em>n</em> = 10), as decontaminated soil after the application of local decontamination policies, forest soils (n = 24) and subsurface material originating from channel bank collapse or landslides (<em>n</em> = 10; referred to as subsoil). A sediment core was collected in the Mano Dam lake (Hayama lake) on the 6th June 2021 and was sectionned into 1-cm layers (<em>n</em> = 38). Laboratory mixtures (<em>n</em> = 27) were made to assess different contribution levels from the sources.</p> <p>The current dataset comprises four .csv files including data and metadata information and their respective descriptions of variables. The data set is composed of soil samples, sediment core layer and laboratory mixtures. Laboratory mixtures were prepared to provide a dataset to calibrate/validate un-mixing models implemented to address this research question and analysed in the same conditions and using the same equipment as the source/target material.</p> <p>Recommended encoding format: <strong>latin1</strong></p>
Improving anxiety research novel approach to reveal trait anxiety through summary measures of multiple states - raw count data set - RNAseq
<p>Raw count data of the RNAseq analysis of a project and manuscript under the title "Improving anxiety research novel approach to reveal trait anxiety through summary measures of multiple states". The header of the table includes the subject identifiers except the first column "genes". The latter column includes all assessed gene identifiers.</p>
Dataset: Label-free detection of methicillin resistance in Staphylococcus aureus using different Raman-spectroscopy approaches
<p>This is the dataset accompanying the submission of the manuscript: Label-free detection of methicillin resistance in Staphylococcus aureus using different Raman-spectroscopy approaches in the journal Microbiology Spectrum.</p> <p>The data description is the following:</p> <p>Strains<br> 16859MRSA= Strain AUSTR-07-16859 MRSA<br> 16859MSSA= Strain AUSTR-07-16859 MSSA<br> CC8MRSA= Strain 08V15773<br> CC8MSSA= Strain MRSA2010-174<br> AUSTR05MRSA= Strain AUSTR-05-15441 MRSA<br> AUSTR05MSSA= Strain AUSTR-05-15441 MSSA<br> CC361MRSA= Strain UAE-Abu Dhabi-020<br> CC361MSSA= Strain UAE-Dubai-80-MS 1368.9/09</p> <p>Datasets<br> UVRR: UV-Resonance Raman with 244 nm excitation on bulk samples, calibration standard Polystyrene, measurements were time series of 10 consecutive spectra, for each strain and batch 25 time series were collected from 3 different slides<br> 532nm: Single cell analysis with 532nm excitation, calibration standard 4AAP, one spectrum per bacterial cell was collected<br> 785nm: Bulk analysis of bacterial colonies using 785 nm excitation and a Raman fibre probe, calibration standard 4AAP, bulk analysis, individual spectra of colonies were collected</p> <p>Data structure is in the metadata files.<br> Individual spectra are in the folders sorted by the date they were measured.</p>
Coding data to accompany "A quantitative approach to sociotopography in Austronesian languages"
<p>Dataset consists of csv files with sample languages identified by name and Glottocode. Coding for four sociolinguistic variables, as well as an overall "orientation type." Each file corresponds to a different method for coding languages employing multiple spatial orientation strategies, as described in the document coding.pdf.</p> <p><strong>Orientation type</strong></p> <ul> <li>land-sea = axis oriented orthogonal to the coast, based on opposition between landward (inland) and seaward (toward the coast), regardless of whether these terms reflect PAN *daya and *lahud </li> <li>land-sea* = land-sea systems in which the land-sea opposition is indistinguishable from geophysical elevation</li> <li>coastal = axis oriented parallel to the coast, often but not necessarily co-lexified with vertical `up' and `down'</li> <li>elevation = axis that distinguishes global or geophysical elevation with respect to deictic center </li> <li>riverine = axis oriented parallel to the river, typically with secondary axis orientated orthogonal to river</li> <li>cardinal = axis fixed according to conventions which do not vary with local geography (although they may be motivated by environmental factors such as wind and the sun)</li> </ul> <p><strong>Distribution</strong></p> <ul> <li>distributed</li> <li>island</li> <li>village</li> </ul> <p><strong>Economy</strong></p> <ul> <li>diversified</li> <li>agriculture</li> <li>subsistence</li> </ul> <p><strong>Geography</strong></p> <ul> <li>diversified</li> <li>inland</li> <li>coast</li> </ul> <p><strong>Terrain</strong></p> <ul> <li>mountainous</li> <li>non-mountainous</li> </ul>
Raw data for the article "Visualisation and quantification of flooding phenomena in gas diffusion electrodes used for electrochemical CO2 reduction: A combined EDX/ICP–MS approach"
<p>Raw data for the article "Visualisation and quantification of flooding phenomena in gas diffusion electrodes used for electrochemical CO2 reduction: A combined EDX/ICP–MS approach", published in Journal of Catalysis 2022 408:1–8, doi: <a href="https://doi.org/10.1016/j.jcat.2022.02.014">10.1016/j.jcat.2022.02.014</a></p> <p>Folder names describe the type of data content.</p>
A Taxonomy of Tools and Approaches for FAIRification
<p>Datasets accompanying the study “A Taxonomy of Tools and Approaches for FAIRification” on the tools and approaches emerging from stakeholders’ experiences adopting the FAIR principles in practice.</p> <p> </p> <p>Datasets:</p> <ol> <li> <p>queryResults.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>The dataset consists of the query results returned by OpenAIRE Explore and defines the corpus at the base of our study.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>11 columns:</p> <ol> <li> <p>Query</p> <ul> <li> <p>Type of query entered</p> <ul> <li> <p>FAIR, FAIRification (all fields)</p> </li> <li> <p>OpenAIRE subjects (subject)</p> </li> </ul> </li> </ul> </li> <li> <p>Result Type [OpenAIRE label]</p> <ul> <li> <p>Type of the research output (publication|data|software|other)</p> </li> </ul> </li> <li> <p>Title [OpenAIRE label]</p> </li> <li> <p>Authors [OpenAIRE label]</p> </li> <li> <p>Publication Year [OpenAIRE label]</p> </li> <li> <p>DOI [OpenAIRE label]</p> </li> <li> <p>Download from [OpenAIRE label]</p> </li> <li> <p>Type [OpenAIRE label]</p> <ul> <li> <p>Subtype of the research output</p> </li> </ul> </li> <li> <p>Journal [OpenAIRE label]</p> </li> <li> <p>Funder|Project Name (GA Number) [OpenAIRE label]</p> </li> <li> <p>Access [OpenAIRE label]</p> <ul> <li> <p>Access rights</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> <li> <p>publicationsTools.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>The dataset pairs the tools/services extracted from the corpus to their respective source.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>2 columns:</p> <ol> <li> <p>source</p> <ul> <li> <p>reference to the publication or software citation</p> </li> </ul> </li> <li> <p>name</p> <ul> <li> <p>name of the tool/service/technology</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> <li> <p>toolsAll.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>The dataset lists all the unique tool/service entries, distinguishing between those that were considered relevant for the study (further categorised into tools, technologies or services) and those that were excluded.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>3 columns:</p> <ol> <li> <p>entryType</p> <ul> <li> <p>entry categorisation (tool|service|technology|excluded)</p> </li> </ul> </li> <li> <p>name</p> <ul> <li> <p>name of the tool/service/technology</p> </li> </ul> </li> <li> <p>URL</p> <ul> <li> <p>URL of the tool/service web page or description</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> <li> <p>toolsType.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>Classification of the tools/services/technologies into the study-defined classes.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>19 columns:</p> <ol> <li> <p>name</p> <ul> <li> <p>name of the tool/service/technology</p> </li> </ul> </li> <li> <p>URL</p> <ul> <li> <p>URL of the tool/service web page or description</p> </li> </ul> </li> <li> <p>GUPRI helper - GUPRI creation and management service</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>GUPRI helper - GUPRI Indexing and discovery service</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Metadata helper - Metadata editor</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Metadata helper - Metadata extractor</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Metadata helper - Metadata tracker</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Metadata helper - Metadata validator</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Metadata helper - Metadata assistant</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Indexing and discovery service - registry</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Indexing and discovery service - repository</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Indexing and discovery service - Indexing and discovery service finder</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Converter - metadata</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Converter - data</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Licence helper</p> <ul> <li> <p>‘class’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Assessment tool - automated</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Assessment tool - manual</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>Assessment tool - Assessment tool finder</p> <ul> <li> <p>‘class - subclass’ of the tool/service/technology</p> </li> </ul> </li> <li> <p>DMP tool</p> <ul> <li> <p>‘class’ of the tool/service/technology</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> <li> <p>toolsFAIR.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>The dataset relates the tool/service/technology to the FAIR principles it enables.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>12 columns:</p> <ol> <li> <p>name</p> <ul> <li> <p>name of the tool/service/technology</p> </li> </ul> </li> <li> <p>URL</p> <ul> <li> <p>URL of the tool/service web page or description</p> </li> </ul> </li> <li> <p>F1</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>F2</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>F3</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>F4</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>A</p> <ul> <li> <p>generic reference to the accessibility principles (see the paper)</p> </li> </ul> </li> <li> <p>I1</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>I3</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>R1.1</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>R1.2</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> <li> <p>R1.3</p> <ul> <li> <p>reference to the FAIR principle</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> <li> <p>toolsScope.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>Since the FAIR principles have been specified for different types of resources ((meta)data, semantic artefacts, software and workflows), the dataset correlates the tool/service/technology and the types of FAIR-specific resources it covers.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>6 columns:</p> <ol> <li> <p>name</p> <ul> <li> <p>name of the tool/service/technology</p> </li> </ul> </li> <li> <p>URL</p> <ul> <li> <p>URL of the tool/service web page or description</p> </li> </ul> </li> <li> <p>(meta)data</p> <ul> <li> <p>reference to the FAIR-specific resource</p> </li> </ul> </li> <li> <p>semantic artefact</p> <ul> <li> <p>reference to the FAIR-specific resource</p> </li> </ul> </li> <li> <p>software</p> <ul> <li> <p>reference to the FAIR-specific resource</p> </li> </ul> </li> <li> <p>workflow</p> <ul> <li> <p>reference to the FAIR-specific resource</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> <li> <p>toolsDomain.csv</p> <ul> <li> <p>Description</p> <ul> <li> <p>Classification of the tools/services/technologies into the Frascati framework-defined domains.</p> </li> </ul> </li> <li> <p>Structure</p> <ul> <li> <p>9 columns:</p> <ol> <li> <p>name</p> <ul> <li> <p>name of the tool/service/technology</p> </li> </ul> </li> <li> <p>URL</p> <ul> <li> <p>URL of the tool/service web page or description</p> </li> </ul> </li> <li> <p>cross-domain</p> <ul> <li> <p>domain</p> </li> </ul> </li> <li> <p>Agricultural and veterinary sciences</p> <ul> <li> <p>domain</p> </li> </ul> </li> <li> <p>Engineering and technology</p> <ul> <li> <p>domain</p> </li> </ul> </li> <li> <p>Humanities and the arts</p> <ul> <li> <p>domain</p> </li> </ul> </li> <li> <p>Medical and health sciences</p> <ul> <li> <p>domain</p> </li> </ul> </li> <li> <p>Natural sciences</p> <ul> <li> <p>domain</p> </li> </ul> </li> <li> <p>Social sciences</p> <ul> <li> <p>domain</p> </li> </ul> </li> </ol> </li> </ul> </li> </ul> </li> </ol>
Relativistic description of dense matter equation of state and compatibility with neutron star observables: a Bayesian approach
<p>The general behavior of the nuclear equation of state (EOS), relevant for the description of neutron stars (NS), is studied within a Bayesian approach applied to a set of models based on a density-dependent relativistic mean-field description of nuclear matter <a href="https://arxiv.org/abs/2201.12552">Malik et al 2022</a>. The EOS is subjected to a minimal number of constraints based on nuclear saturation properties and the low-density pure neutron matter EOS obtained from a precise next-to-next-to-next-to-leading order (N$^{3}$LO) calculation in chiral effective field theory ($\chi$EFT). The number of final sample parameters corresponding to the posterior sets is around fourteen thousand. We present five EOSs among them, namely DDBl, DDBm, DDBu1, DDBu2, and DDBx. The DDBl, DDBm, DDBu2 were chosen so that the radius of the 1.4$M_\odot$ star has the lower limit, a medium value, and the upper limit of the 90% CI for the conditional probabilities $P(R|M)$. We have also included DDBu1 that has a slightly lower $R_{1.4}$ than the upper limit but lies completely inside the 90% CI for the conditional probabilities $P(R|M)$. The DDBx is the one that predicts a maximum mass of 2.5$M_\odot$ and has the following nuclear matter properties, $K_0=300$ MeV, $J_{sym,0}=30$ MeV and $L_{sym,0}=39$ MeV.</p> <p>We also release our entire sets of ~14K NS matter EOS. All the EOSs are for NS core and starting baryon density is 0.04 fm$^{-3}$. One needs to add their own choice of crust EOS for the star properties calculation. The uncertainty in star properties for the choice of the different crust has been discussed in Section 2.1 of the manuscript (arxiv: 2201.12552). </p> <pre> To extract the entire sets of ~14K NS matter EOS files, one needs to follow the steps, 1) unzip DDB_EOS_14K.zip ----------------------------Note------------------------------------- All the eos files have three columns baryon density (fm-3), energy density (MeV.fm-3), and pressure (MeV.fm-3). The starting density is 0.04 fm-3, as it is NS core eos. One needs to add their own choice of crust eos in order to calculate NS properties. ---------------------------------------------------------------</pre> <p> </p> <p> </p>
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