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10 results for “Attributed networks”
Soil moisture sensor network, design, location attributes and soil properties, Hainich, Germany, project AquaDiva
<p>This dataset contains information of the small scale highly resolved soil moisture measurement network that is part of the of the AquaDiva Critical Zone exploratory, Hainich National Park, Germany. The dataset contains information on soil measurement locations, as well as attributes to the location, the design type (random locations vs transects), as well as locations attributes like distance to the next tree and soil properties. Measurement design was first introduced by Metzger et al., (2017), and used in Fischer et al., 2023. See there for more information.</p> <p><strong>References</strong></p> <p>Fischer-Bedtke, C., Metzger, J. C., Demir, G., Wutzler, T., and Hildebrandt, A.: Throughfall spatial patterns translate into spatial patterns of soil moisture dynamics – empirical evidence, Hydrology and Earth System Sciences, https://doi.org/10.5194/hess-2022-418, 2023.</p> <p>Metzger, J. C., Wutzler, T., Dalla Valle, N., Filipzik, J., Grauer, C., Lehmann, R., Roggenbuck, M., Schelhorn, D., Weckmüller, J., Küsel, K., Totsche, K. U., Trumbore, S., and Hildebrandt, A.: Vegetation impacts soil water content patterns by shaping canopy water fluxes and soil properties, Hydrological Processes, 31, 3783–3795, https://doi.org/10.1002/hyp.11274, 2017.</p>
Undirected Node Attributed Social Network Graph of Twitter Users interested in plastic pollution - created in the framework of the PlasticTwist project
<p>This dataset has been created in the framework of the Plastic Twist project (<a href="https://ptwist.eu/">Ptwist</a>) and more specifically using the Ptwist crowdsourcing application (<a href="https://crowdsourcing.plastictwist.com/">crowdsourcing.plastictwist.com/</a>). We are sharing the edge list and specific node attributes (hashtags) of Twitter users posting about plastic pollution. The dataset can be used for community detection,clustering, node importance, influence maximization tasks, etc. Each user is represented by a unique integer which has nothing to do with the official Twitter user ID. The dataset contains three (3) files: </p> <ul> <li>ptwist.edgelist: A list containing all the 1,362,863 edges between the users. When loaded they create an undirected graph of 800K+ users.</li> <li>node_attributes.txt: This file contains information about the hashtags used by each user. (e.g. "652003": ["SingleUsePlastic"] -> user 6529003 has used the hashtag SingleUsePlastic) </li> <li>annotated_graph: A pickle file which, when loaded, returns a <a href="https://networkx.github.io/">NetworkX</a> node attributed undirected graph.</li> </ul> <p> </p> <p> </p>
Two Dynamic Attributed Networks: Enron & Jazz LastFM
<p><strong>Description. </strong>This repository contains two dynamic and attributed social networks extracted from the well-known Enron email dataset, and from the LastFM online music platform. We used both networks in the following papers:</p> <ol> <li>G. K. Orman, V. Labatut, M. Plantevit, and J.-F. Boulicaut, “A Method for Characterizing Communities in Dynamic Attributed Complex Networks,” in <em>IEEE/ACM International Conference on Advances in Social Network Analysis and Mining (ASONAM)</em>, 2014, pp. 481–484. ⟨<a href="https://hal.archives-ouvertes.fr/hal-01011913">hal-01011913</a>⟩ DOI: <a href="http://doi.org/10.1109/ASONAM.2014.6921629">10.1109/ASONAM.2014.6921629</a></li> <li>G. K. Orman, V. Labatut, M. Plantevit, and J.-F. Boulicaut, “Interpreting communities based on the evolution of a dynamic attributed network,” <em>Social Network Analysis and Mining</em>, vol. 5, p. 20, 2015. ⟨<a href="https://hal.archives-ouvertes.fr/hal-01163778">hal-01163778</a>⟩ DOI: <a href="http://doi.org/10.1007/s13278-015-0262-4">10.1007/s13278-015-0262-4</a></li> </ol> <p><strong>Citation. </strong>If you use these data, please cite the paper [1].</p> <p><br><code>@InProceedings{Orman2014,</code><br><code> author = {Orman, Günce Keziban and Labatut, Vincent and Plantevit, Marc and Boulicaut, Jean-François},</code><br><code> title = {A Method for Characterizing Communities in Dynamic Attributed Complex Networks},</code><br><code> booktitle = {IEEE/ACM International Conference on Advances in Social Network Analysis and Mining},</code><br><code> year = {2014},</code><br><code> pages = {481-484},</code><br><code> address = {Beijing, CN},</code><br><code> publisher = {IEEE Publishing},</code><br><code> doi = {10.1109/ASONAM.2014.6921629},</code><br><code>}</code></p> <p>----------------------------------------</p> <p><strong>Enron dataset. </strong>Enron is a well-known dataset in network science and text mining. It has been widely studied in academia. In network science, several different static networks appear in the literature. However, up to now, no dynamic network has been published, even though the email conversations have timestamps.</p> <p>We processed the original dataset to extract a dynamic network. There are 158 nodes representing Enron employees between 1997 and 2002. All the addresses in the <em>From</em> and <em>To</em> fields of each email are considered, resulting in a network of 28,802 nodes representing a distinct email addresses. A time span of one month is chosen for the time slices, generating 46 time slices. Two nodes are connected if the corresponding persons emailed each other during the given time slice. We did not make any distinction between sender and receiver, and thus produced an undirected dynamic network. </p> <p>----------------------------------------</p> <p><strong>LastFM dataset. </strong>LastFM is a music website that allows its members to register and listen to music online. It is also a social network platform, because its members can declare friendship relationships. In LastFM, members can join a predefined group related to their music tastes, and participate in music-related events such as concerts. Using the LastFM API, One can retrieve the information of the artist and track a user has listened to, with the exact timestamp. Moreover, it is also possible to get some information regarding the music-related events the users joined, including the exact timestamps.</p> <p>We extracted a network by focusing on the members of the <em>Jazz</em> group, which is supposed to include users appreciating this type of music. We took advantage of the LastFM API to retrieve the members of this group and the existing friendship connection between them. In the end, our network contains 1,702 nodes representing the <em>Jazz</em> users. The friendship relationships between them is static, though, in the sense that the LastFM API does not give access to any temporal information regarding their beginning or end. So, we decided to take advantage of some additional information to get a dynamic structure. We put a link between two nodes if two conditions were simultaneously true: 1) both considered users listened to at least one common artist for a specific period of time, and 2) they are friends on the LastFM platform. For the mentioned period of time, we decided to use 3 months with 1 month overlap, after having analyzed the dynamics of the platform. In other words, we extracted a dynamic network in which each time slice represents three months of LastFM usage for our 1,702 users of interest. There are one month overlap between two consecutive time slices.</p>
Local Optima Network Analysis of Multi-attribute Vehicle Routing Problem
<p>Multi-Attribute Vehicle Routing Problems (MAVRP) are variants of Vehicle Routing Problems (VRP) in which, besides the original constraint on vehicle capacity present in Capacitated Vehicle Routing Problem (CVRP), there are other restrictions that model diverse real-life system attributes. Among the most common attributes studied in the literature are the vehicle capacity and the maximum route length constraints. The impact of these restrictions on the overall structure of the problem and on the performance of local search algorithms used to solve it is not well known. This paper aims to explain how constraints impact different variants of VRP by altering the structure of the underlying search space. We focus on the analysis of Local Optima Networks (LON) for multiple Traveling Salesman Problem (m-TSP), and VRP with capacity (CVRP), distance (DVRP), and both (DCVRP) constraints. We present results that indicate that metrics obtained for a sample of local optima provide valuable information on the behavior of the landscape under modifications in the constraints of the problem. <br> The dataset contains the data extracted from the local optima network for a set of variants belonging to the family of vehicle routing problems.</p>
Adjacency matrices and nodal attributes for prestige and homophily predict network structure for social learning of medicinal plant knowledge
<p>Human subsistence societies have thrived in environmental extremes while maintaining biodiversity through social learning of ecological knowledge, such as techniques to prepare food and medicine from local resources. However, there is limited understanding of which processes shape social learning patterns and configuration in ecological knowledge networks, or how these processes apply to resource management and biological conservation. In this study, we test the hypothesis that the prestige (rarity or exclusivity) of knowledge shapes social learning networks. In addition, we test whether people tend to select who to learn from based on prestige (knowledge or reputation), and homophily (e.g., people of the same age or gender). We used interviews to assess five types of medicinal plant knowledge and how 303 people share this knowledge across four villages in Solomon Islands. We developed exponential random graph models (ERGMs) to test whether hypothesized patterns of knowledge sharing based on prestige and homophily are more common in the observed network than in randomly simulated networks of the same size. We found that prestige predicts five hypothesized network configurations and all three hypothesized learning patterns, while homophily predicts one of three hypothesized network configurations and five of the seven hypothesized learning patterns. These results compare the strength of different prestige and homophily effects on social learning and show how cultural practices such as intermarriage can affect certain aspects of prestige and homophily. By advancing our understanding of how prestige and homophily affect ecological knowledge networks, we identify which social learning patterns have the largest effects on biocultural conservation of ecological knowledge.</p>
Morph_CNeT: A new GIS tool to extract morphometric attributes characterising channel network topology of Indian catchments
<p><span>Morph_CNeT” (Morphometric Channel Network Extraction Tool) can facilitate extraction of the topology based new morphometric attributes by processing DEM datasets within GIS framework. Morph_CNeT tool is used to create a repository named as Morph_CNeT-India of topological catchment attributes for 1749 gauging stations maintained by the Central Water Commission (CWC) across 22 River basin Systems of India.</span></p>
Dataset from: Selecting deep neural networks that yield consistent attribution-based interpretations for genomics
<p>Deep neural networks (DNNs) have demonstrated great promise at taking DNA sequences as input and predicting a wide variety of functional activity. Post hoc attribution analysis has been employed to provide insights into the features learned by DNNs, often revealing patterns such as known motifs. However, attribution maps are noisy in practice to an extent that varies from model to model, even across DNNs that yield similar generalization performance. This makes it challenging to identify which high-performing DNN will provide trustworthy explanations. Here we propose a summary statistic that characterizes the consistency of learned features across a population of attribution maps which can be utilized as an additional criterion for model selection. We demonstrate the efficacy of this approach quantitatively using synthetic data and qualitatively with chromatin accessibility data. Together, this work advances our ability to select optimal DNNs that not only yield high generalization performance but also reliable attribution maps that will, in turn, accelerate scientific discovery in genomics.</p>
Adjacency matrices and nodal attributes for prestige and homophily predict network structure for social learning of medicinal plant knowledge
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The "lastfm" data set used in the article "A comparative study of social network models: Network evolution models and nodal attribute models"
<p>This is the "lastfm" network used in the article:</p> <p>Toivonen, R., Kovanen, L., Kivelä, M., Onnela, J. P., Saramäki, J., & Kaski, K. (2009). A comparative study of social network models: Network evolution models and nodal attribute models. Social networks, 31(4), 240-254.</p> <p>doi:10.1016/j.socnet.2009.06.004</p> <p>The data set is described in the article. Please cite the original article when using this data set.</p> <p>Format of the data set is an edge list, where row in the file is an edge connecting the two nodes indicated by the two numbers separated by a whitespace. Each node number corresponds to a single account in the website.</p> <p>The original data in which this network is based on was licensed under the "Creative Commons Attribution-NonCommercial-ShareAlike 2.0 UK: England & Wales" licese, and accordinly this data set uses the same license. License available at https://creativecommons.org/licenses/by-nc/2.0/uk/</p>
Data Repository for "Integrating Water Quality Data with a Bayesian Network Model to Improve Spatial and Temporal Phosphorus Attribution: Application to the Maumee River Basin"
<p>Data for "Integrating Water Quality Data with a Bayesian Network Model to Improve Spatial and Temporal Phosphorus Attribution: Application to the Maumee River Basin". This repository contains all the processed data used in the simulation (in "processed" folder), part of the raw data (in "raw" folder), and the SWAT simulation results (in "SWAT" folder). The code for processing the raw data, which are either provided here or publicly available online, is provided in the <a href="https://doi.org/10.5281/zenodo.8132662">code repository</a>. The links to the publicly available raw data are also provided in the code repository.</p>
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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