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7 results for “Bacillaceae”
Fig. 2 in Signs of Bacillus thuringiensis (Bacillales: Bacillaceae) infection in Myzus persicae (Hemiptera: Aphididae): Koch's postulates
Fig. 2. Infection signs in Myzus persicae caused by 4 strains of Bacillus thuringiensis. (A) Diet without B. thuringiensis strain, (B) strain GP300, (C) strain GP528, (D) strain GP402, and (E) strain GP777; (a) 24 h, (b) 48 h, (c) 60 h, and (d) 80 h. (For description, see the text.)
Fig. 1 in Signs of Bacillus thuringiensis (Bacillales: Bacillaceae) infection in Myzus persicae (Hemiptera: Aphididae): Koch's postulates
Fig. 1. Analysis of the protein profiles of the original strains and those isolated from dead aphids (10% SDS-PAGE). The first lane for a pair of numbers corresponds to the original strain, and the second lane to the strain isolated from dead aphids; (Lanes 1 and 2) GP209, (Lanes 3 and 4) GP528, (Lanes 5 and 6) GP780, (Lanes 7 and 8) GP139, (Lane 9) Cry1Ac, (Lanes 10 and 11) GP782, (Lanes 12 and 13) GP300, (Lanes 14 and 15) GP777, and (Lanes 16 and 17) GP402.
Fig. 1 in Changes in midgut gene expression following Bacillus thuringiensis (Bacillales: Bacillaceae) infection in Monochamus alternatus (Coleoptera: Cerambycidae)
Fig. 1. Comparison of the gene expression levels between the control (CK) and Bt-exposed Monochamus alternatus. To compare the gene expression levels between the 2 libraries, each library was normalized to 1 million tags. The x-axis represents log10 of the reads per kb per million reads (RPKM) of the control sample, and the y-axis indicates log10 of the RPKM of the treated sample. The expression level of each gene is included in the volcano plot. The red dots represent transcripts that are more prevalent in the Bt-treated library, the green dots show those present at a lower frequency in the Bt-treated library, and the blue dots indicate transcripts that did not change significantly. The parameters "FDR <0.001" and "absolute value of log2(Treated/Control) ≥ 1" were used as the thresholds to judge the significance of the gene expression difference.
Fig. 1 in Characterization of Bacillus thuringiensis (Bacillaceae) strains pathogenic to Myzus persicae (Hemiptera: Aphididae)
Fig. 1. Protein profiles of the strains virulent to Myzus persicae. Lane 1: GP640, Lane 2: GP399, Lane 3: GP238, Lane 4: GP322, Lane 5: GP139, Lane 6: GP762, Lane 7: GP339, Lane 8: GP300, Lane 9: HD1, Lane 10: GP402, Lane 11: GP382, Lane 12: GP528, Lane 13: GP782, Lane 14: GP209, Lane 15: GP777, Lane 16: GP778, Lane 17: GP60, Lane 18: GP780.
Phylogenetic placement of Pseudoneobacillus sp. JJ-79 within Bacillaceae family
<p>This repository contains phylogenetic trees (and associated sequence data) inferred to assess the phylogenetic placement of <em>Pseudoneobacillus</em> sp. JJ-79 (tax id: 2880968) within 512 type strains representative of the <em>Bacillaceae</em> family.</p> <p> </p> <p>Three phylogenetic trees were inferred, each from a multi-gene dataset (as described at <a href="http://giphy.pasteur.fr/PhyloM/Bacillaceae">http://giphy.pasteur.fr/PhyloM/Bacillaceae</a>):</p> <ul> <li><strong>BM1</strong>: 87 conserved genes (<a href="https://doi.org/10.1371/journal.pone.0077033">Wu et al. 2013</a>, <a href="https://doi.org/10.1099/ijsem.0.004475">Gupta et al. 2020</a>, <a href="https://doi.org/10.1099/ijsem.0.003775">Patel and Gupta 2020</a>),</li> <li><strong>BM2</strong>: major subunits of the DNA Gyrase (<em>GyrA</em> and <em>GyrB</em>) and RNA polymerase (<em>RpoB</em> and <em>RpoC</em>; <a href="https://doi.org/10.1099/ijsem.0.003775">Patel and Gupta 2020</a>),</li> <li><strong>BM3</strong>: DNA helicase II and DNA polymerase I (<em>UvrD</em> and <em>PolA</em>; <a href="https://doi.org/10.1099/ijsem.0.003775">Patel and Gupta 2020</a>).</li> </ul> <p> </p> <p>For each dataset <strong>BM<em>i</em></strong> (<em>i</em> = 1, 2, 3), four files are available:</p> <ul> <li><code>BM<em>i</em>.faa </code> the concatenation of the filtered multiple sequence alignments (FASTA format);</li> <li><code>BM<em>i</em>.nwk </code> a maximum likelihood phylogenetic tree inferred from <code>BM<em>i</em>.faa</code> (NEWICK format);</li> <li><code>BM<em>i</em>.pdf </code> a graphical representation of the phylogenetic tree (PDF format);</li> <li><code>BM<em>i</em>.seq.tar.gz </code> for each gene name, three FASTA files are available in this tar.gz archive: <ul> <li>initial sequences (*.faa),</li> <li>multiple sequence alignment (*.afa),</li> <li>filtered multiple sequence alignment (*.ffa).</li> </ul> </li> </ul> <p> </p> <p>In complement, the multiple sequence alignments of 11 loci are available in the archive <code>CSI.tar.gz</code>. Each of these loci shares a conservative signature indel (CSI) that is indicative of the closely related <em>Neobacillus</em> genus (see Table 4 —Niacini clade— in <a href="https://doi.org/10.1099/ijsem.0.003775">Patel and Gupta 2020</a>):</p> <ul> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_066086220">fliF</a></em>, flagellar M-ring protein FliF;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_066094713">rplX</a></em>, 50S ribosomal protein L24;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_007087611">prmA</a></em>, 50S ribosomal protein L11 methyltransferase;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_066065587">hisH</a></em>, imidazole glycerol phosphate synthase subunit HisH;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_040344893">hisZ</a></em>, ATP phosphoribosyltransferase regulatory subunit;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_007086698">mdoB</a></em>, LTA synthase family protein;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_066365003">topA</a></em>, type I DNA topoisomerase;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_042455853">pncB</a></em>, nicotinate phosphoribosyltransferase;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_007085202">thiD</a></em>, phosphomethylpyrimidine kinase;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_034672618">recJ</a></em>, single-stranded-DNA-specific exonuclease RecJ;</li> <li><em><a href="https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?FULL&SEQUENCE=WP_066089666">dxs</a></em>, 1-deoxy-D-xylulose-5-phosphate synthase.</li> </ul>
Fig. 2. A in Changes in midgut gene expression following Bacillus thuringiensis (Bacillales: Bacillaceae) infection in Monochamus alternatus (Coleoptera: Cerambycidae)
Fig. 2. A plotted regression for RT-qPCR validation analysis.
Selectivity of Bacillus thuringiensis (Bacillales: Bacillaceae) to the polyphagous predator Ceraeochrysa claveri (Navás, 1911) (Neuroptera: Chrysopidae)
<p>Data referring to the selectivity analysis of the bioinsecticide Agree, on the biological controller of pest arthropods, Ceraeochrysa claveri.</p> <p> </p> <pre> </pre>
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OpenNeuro
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