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Gene Annotations of 49 Bacillariophyta Genome Assemblies
<div>Contact: katharina.hoff@uni-greifswald.de.</div> <div> </div> <div> <h2>Manuscript</h2> <p>The data hosted here is associated with the preprint <a href="https://doi.org/10.48550/arXiv.2410.05467">https://doi.org/10.48550/arXiv.2410.05467</a></p> </div> <h2>Files</h2> <div>The following gff3-files with structural and functional genome annotation are included in the compressed archive Bacillariophyta_annotations.tar.gz:</div> <div> </div> <div>Asterionella_formosa.gff3<br>Asterionellopsis_glacialis.gff3<br>Bacterosira_constricta.gff3<br>Chaetoceros_muellerii.gff3<br>concatenated_output.gff3<br>Conticribra_guillardii.gff3<br>Conticribra_weissflogii.gff3<br>Craspedostauros_australis.gff3<br>Cyclostephanos_invisitatus.gff3<br>Cyclostephanos_tholiformis.gff3<br>Cyclotella_atomus.gff3<br>Cyclotella_baltica.gff3<br>Cyclotella_choctawhatcheeana.gff3<br>Cyclotella_cryptica.gff3<br>Cylindrotheca_fusiformis.gff3<br>Detonula_confervacea.gff3<br>Discostella_pseudostelligera.gff3<br>Discostella_stelligera.gff3<br>Discostella_stelligeroides.gff3<br>Epithemia_pelagica.gff3<br>Fistulifera_pelliculosa.gff3<br>Fistulifera_solaris.gff3<br>Fragilaria_radians.gff3<br>Fragilariopsis_cylindrus.gff3<br>Licmophora_abbreviata.gff3<br>Mediolabrus_comicus.gff3<br>Nitzschia_palea.gff3<br>Nitzschia_putrida.gff3<br>Porosira_glacialis.gff3<br>Psammoneis_japonica.gff3<br>Pseudo-nitzschia_multiseries.gff3<br>Pseudo-nitzschia_pungens.gff3<br>Skeletonema_costatum.gff3<br>Skeletonema_marinoi.gff3<br>Skeletonema_menzelii.gff3<br>Skeletonema_potamos.gff3<br>Skeletonema_tropicum.gff3<br>Stephanocyclus_meneghinianus.gff3<br>Stephanodiscus_minutulus.gff3<br>Stephanodiscus_triporus.gff3<br>Thalassiosira_allenii.gff3<br>Thalassiosira_delicatula.gff3<br>Thalassiosira_exigua.gff3<br>Thalassiosira_gravida.gff3<br>Thalassiosira_livingstoniorum.gff3<br>Thalassiosira_mediterranea.gff3<br>Thalassiosira_oceanica.gff3<br>Thalassiosira_ordinaria.gff3<br>Thalassiosira_pacifica.gff3<br>Thalassiosira_profunda.gff3</div> <div> </div> <div>To extract the dataset, execute the following command:</div> <div> </div> <div><code>tar -xvf Bacillariophyta_annotations.tar.gz</code></div> <h2>Genome Assemblies</h2> <div>The files in this folder attain to genome assemblies are publicly available at NCBI datasets (https://www.ncbi.nlm.nih.gov/datasets/). We used the following versions:</div> <div> </div> <div>Asterionella formosa GCA_002256025.1</div> <div>Asterionellopsis glacialis GCA_014885115.2</div> <div>Bacterosira constricta GCA_037356235.1</div> <div>Chaetoceros muellerii GCA_019693545.1</div> <div>Conticribra guillardii GCA_036939335.1</div> <div>Conticribra weissflogii GCA_036940025.1</div> <div>Craspedostauros australis GCA_026770025.1</div> <div>Cyclostephanos invisitatus GCA_036939675.1</div> <div>Cyclostephanos tholiformis GCA_036939975.1</div> <div>Cyclotella atomus GCA_036939935.1</div> <div>Cyclotella baltica GCA_036939635.1</div> <div>Cyclotella choctawhatcheeana GCA_036939855.1</div> <div>Cyclotella cryptica GCA_013187285.1</div> <div>Cylindrotheca fusiformis GCA_019693525.1</div> <div>Detonula confervacea GCA_036939415.1</div> <div>Discostella pseudostelligera GCA_036940085.1</div> <div>Discostella stelligera GCA_036939735.1</div> <div>Discostella stelligeroides GCA_036939555.1</div> <div>Epithemia pelagica GCA_946965045.2</div> <div>Fistulifera pelliculosa GCA_026008555.1</div> <div>Fistulifera solaris GCA_030295235.1</div> <div>Fragilaria radians GCA_900642245.1</div> <div>Fragilariopsis cylindrus GCA_900095095.1</div> <div>Licmophora abbreviata GCA_900291995.1</div> <div>Mediolabrus comicus GCA_036940125.1</div> <div>Nitzschia palea GCA_019593585.1</div> <div>Nitzschia putrida GCA_016586335.1</div> <div>Porosira glacialis GCA_036939395.1</div> <div>Psammoneis japonica GCA_008632985.1</div> <div>Pseudo-nitzschia multiseries GCA_037355745.1</div> <div>Pseudo-nitzschia pungens GCA_037355855.1</div> <div>Skeletonema costatum GCA_018806925.1</div> <div>Skeletonema marinoi GCA_030544225.1</div> <div>Skeletonema menzelii GCA_036940005.1</div> <div>Skeletonema potamos GCA_036940105.1</div> <div>Skeletonema tropicum GCA_037178625.1</div> <div>Stephanocyclus meneghinianus GCA_036940045.1</div> <div>Stephanodiscus minutulus GCA_036939435.1</div> <div>Stephanodiscus triporus GCA_036939755.1</div> <div>Thalassiosira allenii GCA_036939655.1</div> <div>Thalassiosira delicatula GCA_036939835.1</div> <div>Thalassiosira exigua GCA_036939895.1</div> <div>Thalassiosira gravida GCA_037356215.1</div> <div>Thalassiosira livingstoniorum GCA_036939595.1</div> <div>Thalassiosira mediterranea GCA_036939795.1</div> <div>Thalassiosira oceanica GCA_019693575.1</div> <div>Thalassiosira ordinaria GCA_036939695.1</div> <div>Thalassiosira pacifica GCA_036939875.1</div> <div>Thalassiosira profunda GCA_036939355.1</div> <p> </p> <h2>Converting to Protein FASTA and Coding Sequences FASTA</h2> <p> </p> <div>To save storage place at Zenodo, we did not upload the protein FASTA and coding sequence FASTA files. They can easily be generated from the genome FASTA file in combination with the respective GFF3 file. To do this, you can use the following commands:</div> <p> </p> <div><code># assume that genome.fa ist you respective genome FASTA file downloaded from NCBI datasets</code></div> <div><code>sed '/^>/ s/ .*//' genome.fasta > genome_short_headers.fasta</code></div> <div><code># assume that file.gff is the respective GFF3 file</code></div> <div><code>getAnnoFastaFromJoingenes.py -g genome_short_headers.fasta -3 file.gff -o nameStem</code></div> <div> </div> <div>This will produce the following files: nameStem.aa (protein FASTA file) and nameStem.codingseq (coding sequence FASTA file).</div> <div> </div> <div>The getAnnoFastaFromJoingenes.py script is available at https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/getAnnoFastaFromJoingenes.py . It is part of the AUGUSTUS software package.</div> <h2>Release notes</h2> <p>This release contains a gene set where a results of an OrthoFinder run that did not include genes on contigs that are suspected to be contaminants or horizontal gene transfer candidates were used to filter single exon genes. This means the gene and transcript counts changed compared to the previous release.</p> <h2>License</h2> <div>The genome annotation files are licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</div>
Gene Annotations of 49 Bacillariophyta Genome Assemblies (Individual gff3 files)
<div>Contact: katharina.hoff@uni-greifswald.de.</div> <div> </div> <div> <h2>Manuscript</h2> <p>The data hosted here is associated with the preprint <a href="https://doi.org/10.48550/arXiv.2410.05467">https://doi.org/10.48550/arXiv.2410.05467</a> . It is a copy of the data hostet at <a href="https://zenodo.org/records/13933292">https://zenodo.org/records/13933292</a> , but instead of storing one archive will all gff3 files included, the gff3 files are here hosted, individually. This copy was made upon request from the RDA Working Group "FAIRification of Genomic Annotations – metadata harmonisation at scale".</p> <div> <h2>Files</h2> <div>The following gzip-compressed gff3-files with structural and functional genome annotation are included:</div> <div> </div> <div>Asterionella_formosa.gff3.gz<br>Asterionellopsis_glacialis.gff3.gz<br>Bacterosira_constricta.gff3.gz<br>Chaetoceros_muellerii.gff3.gz<br>concatenated_output.gff3.gz<br>Conticribra_guillardii.gff3.gz<br>Conticribra_weissflogii.gff3.gz<br>Craspedostauros_australis.gff3.gz<br>Cyclostephanos_invisitatus.gff3.gz<br>Cyclostephanos_tholiformis.gff3.gz<br>Cyclotella_atomus.gff3.gz<br>Cyclotella_baltica.gff3.gz<br>Cyclotella_choctawhatcheeana.gff3.gz<br>Cyclotella_cryptica.gff3.gz<br>Cylindrotheca_fusiformis.gff3.gz<br>Detonula_confervacea.gff3.gz<br>Discostella_pseudostelligera.gff3.gz<br>Discostella_stelligera.gff3.gz<br>Discostella_stelligeroides.gff3.gz<br>Epithemia_pelagica.gff3.gz<br>Fistulifera_pelliculosa.gff3.gz<br>Fistulifera_solaris.gff3.gz<br>Fragilaria_radians.gff3.gz<br>Fragilariopsis_cylindrus.gff3.gz<br>Licmophora_abbreviata.gff3.gz<br>Mediolabrus_comicus.gff3.gz<br>Nitzschia_palea.gff3.gz<br>Nitzschia_putrida.gff3.gz<br>Porosira_glacialis.gff3.gz<br>Psammoneis_japonica.gff3.gz<br>Pseudo-nitzschia_multiseries.gff3.gz<br>Pseudo-nitzschia_pungens.gff3.gz<br>Skeletonema_costatum.gff3.gz<br>Skeletonema_marinoi.gff3.gz<br>Skeletonema_menzelii.gff3.gz<br>Skeletonema_potamos.gff3.gz<br>Skeletonema_tropicum.gff3.gz<br>Stephanocyclus_meneghinianus.gff3.gz<br>Stephanodiscus_minutulus.gff3.gz<br>Stephanodiscus_triporus.gff3.gz<br>Thalassiosira_allenii.gff3.gz<br>Thalassiosira_delicatula.gff3.gz<br>Thalassiosira_exigua.gff3.gz<br>Thalassiosira_gravida.gff3.gz<br>Thalassiosira_livingstoniorum.gff3.gz<br>Thalassiosira_mediterranea.gff3.gz<br>Thalassiosira_oceanica.gff3.gz<br>Thalassiosira_ordinaria.gff3.gz<br>Thalassiosira_pacifica.gff3.gz<br>Thalassiosira_profunda.gff3.gz</div> <div> </div> <div>To extract individual files after download execute the following command:</div> <div> </div> <div><code>gunzip *.gff3.gz</code></div> <h2>Genome Assemblies</h2> <p> </p> <div>The files in this folder attain to genome assemblies are publicly available at NCBI datasets (https://www.ncbi.nlm.nih.gov/datasets/). We used the following versions:</div> <p> </p> <div>Asterionella formosa GCA_002256025.1</div> <div>Asterionellopsis glacialis GCA_014885115.2</div> <div>Bacterosira constricta GCA_037356235.1</div> <div>Chaetoceros muellerii GCA_019693545.1</div> <div>Conticribra guillardii GCA_036939335.1</div> <div>Conticribra weissflogii GCA_036940025.1</div> <div>Craspedostauros australis GCA_026770025.1</div> <div>Cyclostephanos invisitatus GCA_036939675.1</div> <div>Cyclostephanos tholiformis GCA_036939975.1</div> <div>Cyclotella atomus GCA_036939935.1</div> <div>Cyclotella baltica GCA_036939635.1</div> <div>Cyclotella choctawhatcheeana GCA_036939855.1</div> <div>Cyclotella cryptica GCA_013187285.1</div> <div>Cylindrotheca fusiformis GCA_019693525.1</div> <div>Detonula confervacea GCA_036939415.1</div> <div>Discostella pseudostelligera GCA_036940085.1</div> <div>Discostella stelligera GCA_036939735.1</div> <div>Discostella stelligeroides GCA_036939555.1</div> <div>Epithemia pelagica GCA_946965045.2</div> <div>Fistulifera pelliculosa GCA_026008555.1</div> <div>Fistulifera solaris GCA_030295235.1</div> <div>Fragilaria radians GCA_900642245.1</div> <div>Fragilariopsis cylindrus GCA_900095095.1</div> <div>Licmophora abbreviata GCA_900291995.1</div> <div>Mediolabrus comicus GCA_036940125.1</div> <div>Nitzschia palea GCA_019593585.1</div> <div>Nitzschia putrida GCA_016586335.1</div> <div>Porosira glacialis GCA_036939395.1</div> <div>Psammoneis japonica GCA_008632985.1</div> <div>Pseudo-nitzschia multiseries GCA_037355745.1</div> <div>Pseudo-nitzschia pungens GCA_037355855.1</div> <div>Skeletonema costatum GCA_018806925.1</div> <div>Skeletonema marinoi GCA_030544225.1</div> <div>Skeletonema menzelii GCA_036940005.1</div> <div>Skeletonema potamos GCA_036940105.1</div> <div>Skeletonema tropicum GCA_037178625.1</div> <div>Stephanocyclus meneghinianus GCA_036940045.1</div> <div>Stephanodiscus minutulus GCA_036939435.1</div> <div>Stephanodiscus triporus GCA_036939755.1</div> <div>Thalassiosira allenii GCA_036939655.1</div> <div>Thalassiosira delicatula GCA_036939835.1</div> <div>Thalassiosira exigua GCA_036939895.1</div> <div>Thalassiosira gravida GCA_037356215.1</div> <div>Thalassiosira livingstoniorum GCA_036939595.1</div> <div>Thalassiosira mediterranea GCA_036939795.1</div> <div>Thalassiosira oceanica GCA_019693575.1</div> <div>Thalassiosira ordinaria GCA_036939695.1</div> <div>Thalassiosira pacifica GCA_036939875.1</div> <div>Thalassiosira profunda GCA_036939355.1</div> <p> </p> <h2>Converting to Protein FASTA and Coding Sequences FASTA</h2> <p> </p> <div>To save storage place at Zenodo, we did not upload the protein FASTA and coding sequence FASTA files. They can easily be generated from the genome FASTA file in combination with the respective GFF3 file. To do this, you can use the following commands:</div> <p> </p> <div><code># assume that genome.fa ist you respective genome FASTA file downloaded from NCBI datasets</code></div> <div><code>sed '/^>/ s/ .*//' genome.fasta > genome_short_headers.fasta</code></div> <div><code># assume that file.gff is the respective GFF3 file</code></div> <div><code>getAnnoFastaFromJoingenes.py -g genome_short_headers.fasta -3 file.gff -o nameStem</code></div> <p> </p> <div>This will produce the following files: nameStem.aa (protein FASTA file) and nameStem.codingseq (coding sequence FASTA file).</div> <p> </p> <div>The getAnnoFastaFromJoingenes.py script is available at https://raw.githubusercontent.com/Gaius-Augustus/Augustus/master/scripts/getAnnoFastaFromJoingenes.py . It is part of the AUGUSTUS software package.</div> <h2>Release notes</h2> <p>The submission and release was made upon request of the RDA working group "FAIRification of Genomic Annotations – metadata harmonisation at scale". The contained data is identical to <a href="https://zenodo.org/records/13933292">https://zenodo.org/records/13933292</a></p> <h2>License</h2> <p> </p> <div>The genome annotation files are licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</div> <p> </p> </div> </div>
Fig. 3 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 3. Surirella ebalensis sp. nov., type material from sample CCA 2070, Lomami River, DR Congo, SEM. External view. A–B. Detail of the girdle showing a part of a girdle with ligula (arrow) and the neighbouring interrupted band. C. Detail of the valve mantle with the draped silica spines (arrow) and the silica plaques (arrow) near the edge of the mantle and the valvocopula. D. Detail of the girdle band near the pole. Scale bars = 2 µm.
Fig. 1 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 1. Surirella ebalensis sp. nov., from the holotype slide BR 4398, Lomami River, DR Congo, LM (DIC). A–C. Valve representing the holotype, different foci of the same valve. D–E. Different foci of the same valve. F. Girdle view. Scale bar = 10 µm.
Fig. 9 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 9. Surirella congolensis sp. nov., type material from sample CCA 2071, Lomami River, DR Congo, SEM. Internal view. A–B. Head pole showing the continuous raphe (arrow). C–D. Foot pole showing the interruption of the raphe and the straight slightly expanded terminal raphe endings. E–F. Detail of the alar canals. Scale bars: B–C = 2 µm; A, D = 1 µm.
Fig. 8 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 8. Surirella congolensis sp. nov., type material from sample CCA 2071, Lomami River, DR Congo, SEM. External view. A. Overview. B–C. Detail of foot pole showing the straight not expanded raphe endings (arrow). D. Detail of the apical pole showing the slightly curved raphe endings (arrow). E–F. Detail of the biseriate striae and the open fenestrae with the fenestral bars. Scale bars: A–B = 2 µm; C–F = 1 µm.
Fig. 2 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 2. Surirella ebalensis sp. nov., type material from sample CCA 2070, Lomami River, DR Congo, SEM. External view. B, C, F = detail of the raphe keel with blunt spines orientated towards the valve face and which are draped over a large part of the indented mantle side. A. Overview. B–C. Detail of the valve ornamented with silica granules and blunt spines. D. Detail of the apical pole, showing the curved raphe endings. E–F. Detail of the foot pole showing the straight raphe endings. F. Short spherical shaped silica elements near the pole (arrow). Scale bars: A = 10 µm; B = 4 µm; C, F = 2 µm; D–E = 1 µm.
Fig. 4 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 4. Surirella ebalensis sp. nov., type material from sample CCA 2070, Lomami River, DR Congo, SEM. External view. Details of the various types of spines on the valve face and the keel. A–B. Detail of the valve surface with the biseriate striae (arrow) becoming sometimes uniseriate near the axial area. C–D. Section of the valve face showing the simple perforation of the silica wall at the areolae. Scale bars: A–B = 2 µm; C–D = 1 µm.
Fig. 5 in New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
Fig. 5. Surirella ebalensis sp. nov., type material from sample CCA 2070, Lomami River, DR Congo, SEM. Internal view. A. Detail of the multiseriate striae, and the perforation of the elongated granules without rimmed margin (arrow). B, D. Detail of the continuous raphe near the apical pole with a reduced helictoglossa (arrow). C. Detail of the straight not expanded raphe endings at the foot pole and their reduced helictoglossae (arrows). Scale bars: B = 2 µm; A, C–D = 1 µm.
Figs 29-53 in Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region
Figs 29-53. Achnanthidium maritimo-antarcticum Van de Vijver & Kopalová sp. nov. Light and scanning electron micrographs of the type population on Byers Peninsula (Livingston Island). 29-30. LM views of some frustules in girdle view. 31-40. LM views of raphe valves. 41-49. LM views of rapheless valves. 50. SEM external view of an entire raphe valve. 51. SEM external view of an entire rapheless valve. 52. SEM internal view of an entire raphe valve. 53. SEM internal view of an entire rapheless valve. Scale bars represent 10 µm.
Figs 54-77 in Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region
Figs 54-77. Achnanthidium lailae Van de Vijver. Light and scanning electron micrographs of a population on Clearwater Mesa (James Ross Island). 54-56. LM views of some frustules in girdle view. 57-64. LM views of raphe valves. 65-74. LM views of rapheless valves. 75. SEM external view of an entire rapheless valve. 76. SEM internal view of an entire rapheless valve. 77. SEM external (right) and internal (left) view of an entire raphe valve. Scale bars represent 10 µm.
Figs 2-28 in Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region
Figs 2-28. Achnanthidium indistinctum Van de Vijver & Kopalová sp. nov. Light and scanning electron micrographs of the type population on Byers Peninsula (Livingston Island). 2-4. LM views of some frustules in girdle view. 5-15. LM views of raphe valves. 16-24. LM views of rapheless valves. 25. SEM external view of an entire rapheless valve. 26. SEM external view of an entire raphe valve. 27. SEM internal view of an entire rapheless valve. 28. SEM internal view of an entire raphe valve. Scale bars represent 10 µm.
Figs 78-103 in Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region
Figs 78-103. Achnanthidium sieminskae Witkowski, Kulikovskiy & Riaux-Gobin. Light and scanning electron micrographs of a population on Iles Kerguelen. 78-80. LM views of some frustules in girdle view. 81-91. LM views of raphe valves. 92-99. LM views of rapheless valves. 100. SEM external view of an entire raphe valve. 101. SEM internal view of an entire raphe valve. 102. SEM external view of an entire rapheless valve. 103. SEM internal view of an entire rapheless valve. Scale bars represent 10 µm.
Figs 24–32. Mastogloia belaensis M in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Figs 24–32. Mastogloia belaensis M.Voigt. Light micrographs (LM) of valves from the Lac de Guiers population (Van de Vijver sample SEN-42). 24–28. LM views of several smaller valves showing variation in valve size and shape. 29–30. LM views of the partectal ring with the partecta. 31. LM view of an entire valve with removed partectal ring showing the pseudosepta (arrows). 32. Entire frustule in girdle view. Scale bar: 10 μm.
Fig. 69 in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Fig. 69. World distribution of Mastogloia braunii s. lat. according to the literature. Circles: recent records. Squares: fossil records. Filled symbols indicate confirmed (illustrated) records. 331 locations were found based on 271 references.
Figs 1–5 in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Figs 1–5. Mastogloia braunii Grunow. Light micrographs (LM) of valves from the type population (Grunow 23583 – capsule 0645, Vienna, Austria). 1–3. LM views of 3 valves showing variation in valve size and shape. The arrows in Fig. 2 indicate shortened striae near the central area. 3–4. Same valve taken at different foci. 4–5. LM views of the partectal ring with the partecta. Scale bar: 10 μm.
Figs 46–55 in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Figs 46–55. Mastogloia senegalensis Van de Vijver, Fofana, Sow & Ector sp. nov. Light micrographs of valves from the Lac de Guiers type population (Van de Vijver sample SEN-42). 46–51. LM views of several specimens showing variation in valve size and shape (the arrows in Fig. 46 show typical bifurcating striae near the central area). 52–53. LM views of the partectal ring with the partecta. 54. LM view of an entire valve with removed partectal ring showing the pseudosepta. 55. LM view of an entire valve with removed partectal ring showing the valve interior. Scale bar: 10 μm.
Figs 56–59 in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Figs 56–59. Mastogloia senegalensis Van de Vijver, Fofana, Sow & Ector sp. nov. Scanning electron micrographs (SEM) of valves from the Lac de Guiers type population (Van de Vijver sample SEN-42). 56. SEM girdle view of an entire frustule showing the partectal pores and the mantle areolae. 57. SEM external view of an entire valve with typical undulating raphe branches. 58. SEM external detail of the apex and the axial area with the depressed grooved on both sides of the raphe. 59. SEM external detail of the valve mantle. Scale bars: 10 µm.
Figs 39–45. Mastogloia belaensis M in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Figs 39–45. Mastogloia belaensis M.Voigt. Scanning electron micrographs (SEM) of valves from the Lac de Guiers population (Van de Vijver sample SEN-42). 39. SEM internal view of an entire valve with the typical partectal ring. 40–41. SEM internal details of the partectal ring near the valve apices showing the cleft with the lacunae. 42. SEM internal detail of the central area. 43. SEM internal detail of the valve apex with the pseudoseptum. 44. SEM internal detail of the partecta showing the partectal walls with 2–4 series of small, rounded pores. 45. SEM internal view of the inner areolae arranged in groups of 4–8 per pseudoloculus. Scale bars: 39–43 = 10 µm; 44 = 5 µm; 45 = 1 µm.
Figs 66–68 in Morphology of two Mastogloia species (Bacillariophyta) from Lac de Guiers (Senegal) and comparison with the type material of M. braunii
Figs 66–68. Mastogloia baldjikiana Grunow. Light micrographs (LM) of valves from slide 545 (Baldjick, Types du Synopsis des diatomées de Belgique, Van Heurck collection, BR). 66–67. Same valve taken at different foci. 66, 68. LM views of 2 valves showing variation in valve size and shape. 67. LM view of the partectal ring with the partecta. Scale bar: 10 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
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