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Supplemental data files: Beyond the reference: gene expression variation and transcriptional response to RNAi in C. elegans
<p>This dataset holds all non-GEO-hosted supplemental data files for manuscript "Beyond the reference: gene expression variation and transcriptional response to RNAi in <em>C. elegans</em>". Please see the linked preprint/publication for full details.</p> <p>The PDF _guide_to_datafiles.pdf gives details on the format and content of each of the included files.</p>
C. elegans HSP-17 translational reporter LSM z-stacks
<p>A translational reporter (transgene: <em>phsp-17::hsp-17::wrmScarlet</em>) of the small heat shock protein HSP-17 from C. elegans was generated. This construct expresses a C-terminal fusion of wrmScarlet to HSP-17 in a wild type background, controlled by the native promoter of <em>hsp-17</em>. A publication, for which this worm strain was generated, titled "The non-canonical small heat shock protein HSP-17 from <em>C. elegans</em> is a selective protein aggregase" to JBC is pending (manuscript number: JBC/2019/011185). The dataset contains the raw LSM-data, a version modified for easier viewing as well as a short movie of a 3d-projection. Data for the worms head, body and tail are given.</p> <p>For wrmScarlet, refer Bindels <em>et al.</em>, 2016 & El Mouridi <em>et al.</em>, 2017. Data was evaluated and modified with Fiji (Rueden <em>et al.</em>, 2017 & Schindelin <em>et al.</em>, 2012).</p>
Dataset: Mask R-CNN Based C. Elegans Detection with a DIY Microscope
<p>The dataset consists of images of C. elegans in Petri Dish that were captured at a frequency of 1 Hz at 3280 × 2464 pixels via a Raspberry Pi based DIY Microscope. Further details of the recording setup and the dataset can be found in the corresponding article.</p> <p>Up on use, please cite the following article <a href="https://doi.org/10.3390/bios11080257">https://doi.org/10.3390/bios11080257</a> such as:</p> <p>Fudickar, S.; Nustede, E.J.; Dreyer, E.; Bornhorst, J. Mask R-CNN Based C. Elegans Detection with a DIY Microscope. <em>Biosensors</em> <strong>2021</strong>, <em>11</em>, 257. https://doi.org/10.3390/bios11080257</p> <p> </p> <p><br> </p>
Dataset for "Mapping of centriolar proteins onto the post-embryonic lineage of C. elegans"
<p>This is the dataset with all spreadsheets, confocal and wide field microscopy images and related scripts, related to the publication " "Mapping of centriolar proteins onto the post-embryonic lineage of <em>C. elegans</em>". Refer to the Read me file for further information.</p>
Deeptangle Dataset: Labelled Experimental and Synthetic Videos of Swimming and Overlapping C. elegans worms
<p>This repository contains the dataset employed in the paper <a href="https://arxiv.org/abs/2301.04460">Fast spline detection in high density microscopy data</a>.</p> <p>Three files are provided:</p> <p>1. <em>videos.zip</em>: raw experimental videos.<br> 2. <em>labeled_data.zip</em>: labelled sections of experimental videos used for evaluation<br> 3. <em>syntehthic_dataset.zip</em>: synthetic dataset used for training</p> <p><strong>Labelled data</strong></p> <p>Sections are named as VIDEONAME_FRAMENUMBER_SECTIONID.<br> All labels are in labels.json and correspond to the middle frame of the clip (05.png).<br> Example plotting script is provided (<em>plot_data.py</em>).</p> <p><strong>Synthetic data</strong></p> <p>Clips are named as NUMBEROFWORMS_ID.<br> Labels (for all frames) are stored in labels.npy.<br> Example plotting script is provided (plot_data.py).</p> <p> </p> <p><strong>Related</strong></p> <p>Paper: <a href="https://arxiv.org/abs/2301.04460">https://arxiv.org/abs/2301.04460</a></p> <p>Deeptangle code: <a href="https://github.com/kirkegaardlab/deeptangle">https://github.com/kirkegaardlab/deeptangle</a></p> <p>Labelling tool: <a href="https://github.com/kirkegaardlab/deeptanglelabel">https://github.com/kirkegaardlab/deeptanglelabel</a></p> <p>---</p> <p>If used, please cite</p> <p><em>Albert Alonso & Julius B. Kirkegaard. Fast spline detection in high density microscopy data. 2023.</em></p>
Fig. 1. A–C. Rhaphiostylis elegans Engl. A. Flower B. Flower without petals and stamens. C. Leaf. D–G in Rhaphiostylis minima Jongkind (Icacinaceae), a new liana species from Ivory Coast & Liberia
Fig. 1. A–C. Rhaphiostylis elegans Engl. A. Flower B. Flower without petals and stamens. C. Leaf. D–G. Rhaphiostylis minima sp. nov. D. Branch with flowers. E. Flower. F. Flower without petals and stamens. G. Leaf. H–M. Rhaphiostylis preussii Engl. H. Flower. I. Flower without petals and stamens. J. Leaf. K. Flower. L. Flower without petals and stamens. M. Leaf. All flowers are on the same scale (scale bar with B) and all single leaves too (scale bar with G). A–C from Tchouto & Elad 3310 (WAG), D–G from W.de Wilde 1061 (WAG), H–J from Beentje 1353 B from Ivory Coast (WAG), K–M from Breteler 14204 from Gabon (WAG). Drawn by Hans de Vries.
Alaimus elegans de Man. α, anterior r i end, 1/ 12, ok. 3, x 600. b, tail obj. 7, ok. 3, x 360. c, region of the female organs obj. 7, ok. 3, x 3 6 0. in Terrestrial nematodes from Jan Mayen
Alaimus elegans de Man. α, anterior r i end, 1/ 12, ok. 3, x 600. b, tail obj. 7, ok. 3, x 360. c, region of the female organs obj. 7, ok. 3, x 3 6 0.
Fig. 2. A–C. Helodiomyces elegans F.Picard. A in Laboulbeniomycetes (Fungi, Ascomycota) of Denmark
Fig. 2. A–C. Helodiomyces elegans F.Picard. A. Mature thallus with labelling of cells VI, VI' and VII. B–C. Details of perithecium, including ligules (li) in C. – D. Autoicomyces aquatilis (F.Picard) I.I.Tav.; mature thallus showing the perithecial outgrowth (arrow). – E. Autoicomyces humilis (Thaxt.) Thaxt.; mature thallus at the base of a host claw, and a sporeling on the right. – F–H. Ceratomyces pyrenaeus Santam.; mature thalli showing labelled perithecial excrescences (arrows in G). Scale bars: 50 µm. Photographs from slides ZMUC C-F-122583 (A–C), ZMUC C-F-122567 (D), ZMUC C-F-122566 (E), ZMUC C-F-123551 (F), and ZMUC C-F-123550 (G–H).
Text-fig. 8. SEM (a, b) and SRXTM (c, d) images of fruit associated with Miranthus elegans and Miranthus kvacekii; Mira locality, Portugal. a: Apical view of capsular fruit with five, partly open valves revealing the enclosed reticulate seeds (arrows). b: Detail of fruit wall showing an enclosed seed (arrow). c: Transverse section (orthoslice xy1200) of fruit showing central column (cc) of placenta and numerous angular and bitegmic seeds; note that the outer integument (black arrow) is thicker than inner integument (white arrow). d: Longitudinal section (orthoslice yz1239) of fruit showing perigynous attachment of calyx, central column (cc) of the placenta and sections through seeds. Specimen, Mira 99-S156331 (a–d). Scale bars = 600 µm (a, c, d), 200 µm (b). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 8. SEM (a, b) and SRXTM (c, d) images of fruit associated with Miranthus elegans and Miranthus kvacekii; Mira locality, Portugal. a: Apical view of capsular fruit with five, partly open valves revealing the enclosed reticulate seeds (arrows). b: Detail of fruit wall showing an enclosed seed (arrow). c: Transverse section (orthoslice xy1200) of fruit showing central column (cc) of placenta and numerous angular and bitegmic seeds; note that the outer integument (black arrow) is thicker than inner integument (white arrow). d: Longitudinal section (orthoslice yz1239) of fruit showing perigynous attachment of calyx, central column (cc) of the placenta and sections through seeds. Specimen, Mira 99-S156331 (a–d). Scale bars = 600 µm (a, c, d), 200 µm (b).
Text-fig. 3. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Volume renderings of flower bud in two different lateral views showing long pedicel, distinct calyx (ca) with almost equiaxial epidermal cells and corolla (co) with nearly smooth surface. c–e: Transverse sections (c, orthoslice xy1500; d, orthoslice xy1760; e, orthoslice xy1850) through flower bud at levels below the anthers showing stamen filaments (yellow) opposite the corolla lobes (co) and smaller staminodes (orange) in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 3. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Volume renderings of flower bud in two different lateral views showing long pedicel, distinct calyx (ca) with almost equiaxial epidermal cells and corolla (co) with nearly smooth surface. c–e: Transverse sections (c, orthoslice xy1500; d, orthoslice xy1760; e, orthoslice xy1850) through flower bud at levels below the anthers showing stamen filaments (yellow) opposite the corolla lobes (co) and smaller staminodes (orange)
Text-fig. 5. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse sections of flower (a, orthoslice xy0665 close to the apex of placenta; b, orthoslice xy0800 in middle part of placenta) showing remains of calyx with distinct bundles (arrows), ovary wall (ow) and numerous ovules (ov) on the central mushroom-shaped globose placenta (pl) with central column (cc). c: Transverse section of flower (orthoslice xy0620) through perianth and ovary (ow) at a level above the placenta showing ovules (ov) and cellular preservation of the sepal bundles (arrows shown for one sepal); note abaxial surface of sepals with thick-walled epidermal cells, thick cuticle, and fine pointed verrucae. d: Longitudinal section of flower (orthoslice xz0500) showing perigynous position of calyx and semi-inferior ovary (ow, ovary wall) with a central placenta (pl), central column (cc) and numerous ovules (ov); note spiny verrucae on abaxial surface of calyx lobes. Specimens, Mira 100-S153145 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 5. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse sections of flower (a, orthoslice xy0665 close to the apex of placenta; b, orthoslice xy0800 in middle part of placenta) showing remains of calyx with distinct bundles (arrows), ovary wall (ow) and numerous ovules (ov) on the central mushroom-shaped globose placenta (pl) with central column (cc). c: Transverse section of flower (orthoslice xy0620) through perianth and ovary (ow) at a level above the placenta showing ovules (ov) and cellular preservation of the sepal bundles (arrows shown for one sepal); note abaxial surface of sepals with thick-walled epidermal cells, thick cuticle, and fine pointed verrucae. d: Longitudinal section of flower (orthoslice xz0500) showing perigynous position of calyx and semi-inferior ovary (ow, ovary wall) with a central placenta (pl), central column (cc) and numerous ovules (ov); note spiny verrucae on abaxial surface of calyx lobes. Specimens, Mira 100-S153145 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d).
Text-fig. 2. SEM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in oblique lateral view showing remains of calyx and slightly semi-inferior ovary with elongated apical style (a); note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities and the stomata-like secretory structures on the upper portion of the ovary (arrows) that are interpreted as nectariferous (b). c: Detail of ovary surface showing secretory stomata-like structures (arrows). d: Flower in lateral view showing fragmentary calyx and broken slightly semi-inferior ovary with secretory stomata-like structures; note the point of attachment of the central placenta (pl). e: Cluster of seeds removed from the ovary in (d) showing reticulate surface. f: Outer (abaxial) surface of calyx lobe showing the slightly pointed papillae and scattered, fine trichomes (arrows). g: Triaperturate pollen grains from the ovary surface. Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c), Mira 100-S101266 (d, e), Mira 105-S100732 (f), Mira 100-S170125 (g). Scale bars = 600 µm (a, b, d), 300 µm (f), 100 µm (c, e), 10 µm (g). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 2. SEM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in oblique lateral view showing remains of calyx and slightly semi-inferior ovary with elongated apical style (a); note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities and the stomata-like secretory structures on the upper portion of the ovary (arrows) that are interpreted as nectariferous (b). c: Detail of ovary surface showing secretory stomata-like structures (arrows). d: Flower in lateral view showing fragmentary calyx and broken slightly semi-inferior ovary with secretory stomata-like structures; note the point of attachment of the central placenta (pl). e: Cluster of seeds removed from the ovary in (d) showing reticulate surface. f: Outer (abaxial) surface of calyx lobe showing the slightly pointed papillae and scattered, fine trichomes (arrows). g: Triaperturate pollen grains from the ovary surface. Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c), Mira 100-S101266 (d, e), Mira 105-S100732 (f), Mira 100-S170125 (g). Scale bars = 600 µm (a, b, d), 300 µm (f), 100 µm (c, e), 10 µm (g).
Text-fig. 1. SEM images of flowers of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in lateral view showing elongated pedicel, narrowly triangular sepals and elongated protruding style (a); note the large openings in the floral tissue and pedicel (asterisks) interpreted as schizogenous secretory cavities. c: Flower in lateral view with portion of the calyx missing exposing the ovary wall and slightly raised nectariferous ring with probable stomata-like secretory structures (arrow). d: Flower in lateral view showing long pedicel and three of the five tepals; note the elongated narrowly triangular form of the sepals. e: Flower in oblique lateral view with portion of the calyx missing exposing the ovary and elongated style. f, g: Flowers in apical view showing the bases of five sepals (f) and apex of the five-parted ovary; note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities. Specimens, Mira 100-S170155 (a, holotype), Mira 100-S153145 (b, c, g), Mira 100- S101267 (d), Mira 105-S100732 (e), Mira 100-S101268 (f). Scale bars = 600 µm (a–g). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 1. SEM images of flowers of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in lateral view showing elongated pedicel, narrowly triangular sepals and elongated protruding style (a); note the large openings in the floral tissue and pedicel (asterisks) interpreted as schizogenous secretory cavities. c: Flower in lateral view with portion of the calyx missing exposing the ovary wall and slightly raised nectariferous ring with probable stomata-like secretory structures (arrow). d: Flower in lateral view showing long pedicel and three of the five tepals; note the elongated narrowly triangular form of the sepals. e: Flower in oblique lateral view with portion of the calyx missing exposing the ovary and elongated style. f, g: Flowers in apical view showing the bases of five sepals (f) and apex of the five-parted ovary; note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities. Specimens, Mira 100-S170155 (a, holotype), Mira 100-S153145 (b, c, g), Mira 100- S101267 (d), Mira 105-S100732 (e), Mira 100-S101268 (f). Scale bars = 600 µm (a–g).
Text-fig. 14. Bolshoy Kuvshin, Frentsevka Formation, early-middle Albian. a, e: Asiatifolium elegans G.SUN, SHUANG X.GUO et SHAO L.ZHENG, a – spec. IBSS 320-8, e – spec. IBSS 320-75; b, c: Jixia pinnatipartita SHUANG X.GUO et G.SUN, b – spec. IBSS 320-359, c – spec. IBSS 320-367; d: Achaenocarpites capitellatus KRASSILOV et VOLYNETS, spec. IBSS 320-120; f: Ternaricarpites floribundus KRASSILOV et VOLYNETS, spec. IBSS 320-10; g: undescribed species, spec. IBSS 320-137. Scale bar 1 cm in a, e–g and 5 mm in b–d. in Angiosperm Diversification In The Early Cretaceous Of Primorye, Far East Of Russia
Text-fig. 14. Bolshoy Kuvshin, Frentsevka Formation, early-middle Albian. a, e: Asiatifolium elegans G.SUN, SHUANG X.GUO et SHAO L.ZHENG, a – spec. IBSS 320-8, e – spec. IBSS 320-75; b, c: Jixia pinnatipartita SHUANG X.GUO et G.SUN, b – spec. IBSS 320-359, c – spec. IBSS 320-367; d: Achaenocarpites capitellatus KRASSILOV et VOLYNETS, spec. IBSS 320-120; f: Ternaricarpites floribundus KRASSILOV et VOLYNETS, spec. IBSS 320-10; g: undescribed species, spec. IBSS 320-137. Scale bar 1 cm in a, e–g and 5 mm in b–d.
Text-fig. 17. Angiosperm leaf morphotypes in late Aptian and early-middle Albian of Primorye. a, k: Dicotylophyllum sp. 1, 2; b: Araliaephyllum vittenburgii GOLOVN. et VOLYNETS; c: Araliaephyllum ussuriense (KRASSILOV) GOLOVN.; d: Trochodendroides sp., e: undescribed species, spec. IBSS 320-137; f: Asiatifolium elegans G.SUN, SHUANG X.GUO et SHAO L.ZHENG; g: Sapindopsis cf. angusta (HEER) SEWARD et V.M.CONWAY; h: Sapindopsis sp.; i: Achaenocarpites capitellatus KRASSILOV et VOLYNETS; j: Jixia pinnatipartita SHUANG X.GUO et G.SUN; l: Pandanites ahnertii (KRYSHT.) GOLOVN.; m: Araliaephyllum luciferum (KRYSHT.) GOLOVN. in Angiosperm Diversification In The Early Cretaceous Of Primorye, Far East Of Russia
Text-fig. 17. Angiosperm leaf morphotypes in late Aptian and early-middle Albian of Primorye. a, k: Dicotylophyllum sp. 1, 2; b: Araliaephyllum vittenburgii GOLOVN. et VOLYNETS; c: Araliaephyllum ussuriense (KRASSILOV) GOLOVN.; d: Trochodendroides sp., e: undescribed species, spec. IBSS 320-137; f: Asiatifolium elegans G.SUN, SHUANG X.GUO et SHAO L.ZHENG; g: Sapindopsis cf. angusta (HEER) SEWARD et V.M.CONWAY; h: Sapindopsis sp.; i: Achaenocarpites capitellatus KRASSILOV et VOLYNETS; j: Jixia pinnatipartita SHUANG X.GUO et G.SUN; l: Pandanites ahnertii (KRYSHT.) GOLOVN.; m: Araliaephyllum luciferum (KRYSHT.) GOLOVN.
Рис. 2. Mukhina elegans (Mukhina, 1981) (самка): А — трофико-сенсорный отΔеΛ теΛа; Б — поΛовая система; В — переΔний конец теΛа; Г — хвост; À — фрагмент кутикуΛы с боковым поΛем бп — боковое поΛе, да — ΔробиΛьный аппарат, в — вуΛьва, зм — заΔняя матка, кб — карΔиаΛьный буΛьбус, кск — кΛетки среΔней кишки, нк — нервное коΛьцо, пм — переΔняя матка, р — ректум, рт — ренетта, с — сперма, ск — среΔняя кишка, сп — семяприемник, ф — фазмиΔы, хс — хейΛостома, эп — экскреторная пора, я — яичник Fig. 2. Mukhina elegans (Mukhina, 1981) (female): A — trophic-sensory part of the body; B — the reproductive system; C — the front end of the body; G — the tail; D — fragment of the cuticle with a side field бп — side field, да — crushing apparatus, в — vulva, зм — posterior uterus, кб — cardial bulb, кск — cells of the mid-intestine, нк — nerve ring, пм — anterior uterus, р — rectum, рт — renetta с — sperm, ск — mid-intestin, сп — seminal receptacle, ф — phasmids, хс — cheilostoma, эп — excretory pore, я — ovary in A New Species Sp. Nov. (Nematoda, Cephalobidae) From Primorsky Region (Russia)
Рис. 2. Mukhina elegans (Mukhina, 1981) (самка): А — трофико-сенсорный отΔеΛ теΛа; Б — поΛовая система; В — переΔний конец теΛа; Г — хвост; À — фрагмент кутикуΛы с боковым поΛем бп — боковое поΛе, да — ΔробиΛьный аппарат, в — вуΛьва, зм — заΔняя матка, кб — карΔиаΛьный буΛьбус, кск — кΛетки среΔней кишки, нк — нервное коΛьцо, пм — переΔняя матка, р — ректум, рт — ренетта, с — сперма, ск — среΔняя кишка, сп — семяприемник, ф — фазмиΔы, хс — хейΛостома, эп — экскреторная пора, я — яичник Fig. 2. Mukhina elegans (Mukhina, 1981) (female): A — trophic-sensory part of the body; B — the reproductive system; C — the front end of the body; G — the tail; D — fragment of the cuticle with a side field бп — side field, да — crushing apparatus, в — vulva, зм — posterior uterus, кб — cardial bulb, кск — cells of the mid-intestine, нк — nerve ring, пм — anterior uterus, р — rectum, рт — renetta с — sperm, ск — mid-intestin, сп — seminal receptacle, ф — phasmids, хс — cheilostoma, эп — excretory pore, я — ovary
Fig. 5 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 5. Distribution and frequency of Prosthenorchis elegans haplotypes (A–F) and haplogroups (I–II) by locality and individual. URRAS: Unidad de Rescate y Rehabilitacíon de Animales Silvestres, Universidad Nacional de Colombia; AMVA: Area Metropolitana del Valle de Aburŕa; WCS: Wildlife Conservation Society-Colombia.
Fig. 4 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 4. Phylogenetic tree obtained using Bayesian Inference (BI) and Maximum Likelihood (ML); node supports are provided for BI\ML. Outgroup taxa: Oncicola sp, AF417000; O. luehe = Oncicola luehe, JN710452; M. ingens = Macracanthorhynchus ingens, AF416997; M. hirudinaceus = Macracanthorhynchus hirudinaceus, FR856886; O. tortuous = Oligacanthorhynchus tortuous, AF416999.
Fig. 3 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 3. Haplotype network of Prosthenorchis elegans. Network shows relationships among P.elegans haplotypes (A–F) recovered from Saguinus leucopus and Cebus albifrons based on 633 bp of COI. All branches are of unit length (one mutational step). Labeled open circles represent observed haplotypes; areas of circles are proportional to the number observed for each haplotype. Filled circles indicate inferred haplotypes not found among sampled individuals. Double lines indicate variable sites (49, 274 and 293) resulting in changes in amino acid. Haplogroups are identified.
Fig. 2 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 2. External morphology of Prosthenorchis elegans via scanning electron microscopy (SEM). A. View of entire body of parasite. B. Proboscis armed with hooks.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.