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Dataset results
19 results for “CORTEX project”
Data set for "Diverse long-range axonal projections of excitatory layer 2/3 neurons in mouse barrel cortex"
<p>Data set for: Yamashita T, Vavladeli A, Pala A, Galan K, Crochet S, Petersen SSA, Petersen CCH (2018) Diverse long-range axonal projections of excitatory layer 2/3 neurons in mouse barrel cortex. Front Neuroanat 12: 33. https://doi.org/10.3389/fnana.2018.00033</p> <p>There are 25 files in this data upload:</p> <p>1. '2018_Yamashita_FrontNeuroanat.pdf' - this a pdf version of the online publication.</p> <p>2. 'Yamashita_Figure2_Quantification.xlsx' - this is a Microsoft Excel file giving the locations of high density axonal projections from layer 2/3 pyramidal neurons in the mouse C2 barrel column in the coordinate frame of Paxinos & Franklin (2001) The mouse brain in stereotaxic coordinates. Academic Press. The data are plotted in Figure 2 of Yamashita et al., 2018.</p> <p>3. 'Yamashita_Figure7_Quantification.xlsx' - this is a Microsoft Excel file giving the dendritic length, number of dendrites, number of dendritic nodes and total axonal length, as well as the axonal length in the different projection zones for each reconstructed neuron. The data are plotted in Figure 7 of Yamashita et al., 2018.</p> <p>4. 'Yamashita_SupMov1_S2P_AP049.mov' - this is a QuickTime video file, showing the 3D structure of neuron AP049 featured in Figure 3 of Yamashita et al., 2018.</p> <p>5. 'Yamashita_SupMov2_M1P_TY308.mov' - this is a QuickTime video file, showing the 3D structure of neuron TY308 featured in Figure 5 of Yamashita et al., 2018.</p> <p>6. 'AV198.zip' - this zipped folder contains data relating to mouse AV198: a) 'AV198_stack.tif' the z-stack of whole-brain fluorescence images from expression of tdTomato in layer 2/3 neurons of the C2 barrel column of mouse AV198. b) 'AV198_ROI_Box.zip' can be loaded into FIJI (https://fiji.sc) and indicates projection regions by a box. c) 'AV198_ROI_Point.zip' can be loaded into FIJI (https://fiji.sc) and indicates projection regions by a point. d) 'AV198_Paxinos' is a folder showing the coronal fluorescent brain sections in pdf format overlaid on the equivalent drawing from Paxinos & Franklin (2001) The mouse brain in stereotaxic coordinates. Academic Press.</p> <p>7. 'AV199.zip' - same as 'AV198.zip' but for mouse AV199.</p> <p>8. 'AV201.zip' - same as 'AV198.zip' but for mouse AV201.</p> <p>9. 'AV202.zip' - same as 'AV198.zip' but for mouse AV202.</p> <p>10. 'AV203.zip' - same as 'AV198.zip' but for mouse AV203.</p> <p>11. 'AP042.ASC' - Neurolucida (http://www.mbfbioscience.com/neurolucida) data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP042. Brain contours are also traced.</p> <p>12. 'AP044.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP044. Brain contours are also traced.</p> <p>13. 'AP046.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP046. Brain contours are also traced.</p> <p>14. 'AP047.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP047. Brain contours are also traced.</p> <p>15. 'AP049.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP049. Brain contours are also traced.</p> <p>16. 'TY220.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY220. Brain contours are also traced.</p> <p>17. 'TY288.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY288. Brain contours are also traced.</p> <p>18. 'TY300.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY300. Brain contours are also traced.</p> <p>19. 'TY302.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY302. Brain contours are also traced.</p> <p>20. 'TY308.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY308. Brain contours are also traced.</p> <p>21. 'TY310.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY310. Brain contours are also traced.</p> <p>22. 'TY337.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY337. Brain contours are also traced.</p> <p>23. 'TY345.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY345. Brain contours are also traced.</p> <p>24. 'TY367.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY367. Brain contours are also traced.</p> <p>25. 'TY369.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY369. Brain contours are also traced.</p>
Data set for "Projection-specific activity of layer 2/3 neurons imaged in mouse primary somatosensory barrel cortex during a whisker detection task"
<p>Data set for: Vavladeli A, Daigle T, Zeng H, Crochet S, Petersen CCH (2020) Projection-specific activity of layer 2/3 neurons imaged in mouse primary somatosensory barrel cortex during a whisker detection task. FUNCTION 1: zqaa008. doi: 10.1093/function/zqaa008</p> <p>There are 2 files in this upload:</p> <p>1. The file named "2020_Vavladeli_FUNCTION.pdf" is the Open Access pdf file of the manuscript published in FUNCTION.</p> <p>2. The file named "Vavladeli_data_code.zip" (~2 GB) is a zipped version of a folder named "Vavladeli_data_code" (~2 GB), which contains the data analysed in the study along with the Matlab code used to generate the published figures. When unzipped, the folder contains 8 Matlab '.m' files with analysis code and two '.mat' data files. In order to run the analysis of the data set, you need to execute the '.m' file with the corresponding figure name.</p>
raw and preprocessed data included to the paper "Striatum-projecting prefrontal cortex neurons support working memory maintenance"
<p>This Dataset includes matlab variables containing all raw and preprocessed data</p><p>1) fiber photometry experiments (GCaMP and GFP)</p><p>2) miniscope experiments</p><p>3) optogenetics experiments</p><p>4) DLC video analysis for photometry recording, optogenetic inhibition ArchT, optogenetic activation ChR2, optogenetic activation ChR2 + MK801, control experiments for optogenetic inhibition and activation</p><p>5) Source Data Files for all main and supplementary Figures</p><p> </p><p> collected for the paper</p><p> </p><p><strong>"Striatum-projecting prefrontal cortex neurons support working memory maintenance"</strong></p><p>Maria Wilhelm1,2,6, Yaroslav Sych1,7, Aleksejs Fomins1,2, José Luis Alatorre Warren1,8, Christopher Lewis1, Laia Serratosa Capdevila1, Roman Boehringer3, Elizabeth A. Amadei3, Benjamin Grewe2,3,4, Eoin C. O'Connor5, Benjamin J. Hall5,9, Fritjof Helmchen1,2,4*</p><p>1Brain Research Institute, University of Zurich, 8057 Zurich, Switzerland.</p><p>2Neuroscience Center Zurich, University of Zurich and ETH Zurich, 8057 Zurich, Switzerland. </p><p>3Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057 Zurich, Switzerland. </p><p>4University Research Priority Program (URPP) Adaptive Brain Circuits in Development and Learning (AdaBD), University of Zurich, Zurich, Switzerland</p><p>5Neuroscience & Rare Diseases, Roche Pharma Research and Early Development, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Basel, Switzerland.</p><p>6Present address: Institute for Neuroscience, ETH Zurich, 8057 Zurich, Switzerland. </p><p>7Present address: Institute of Cellular and Integrative Neuroscience, CNRS, University of Strasbourg, Strasbourg, France.</p><p>8Present address: Center for Lifespan Changes in Brain and Cognition, University of Oslo, Oslo 0317, Norway.</p><p>9Present address: Circuit Biology Department, H. Lundbeck A/S, Valby, Denmark.</p><p>These authors contributed equally: Maria Wilhelm, Yaroslav Sych</p><p>*email: <a href="mailto:helmchen@hifo.uzh.ch">helmchen@hifo.uzh.ch</a></p>
Electrophysiology and anatomy data for: Projection-specific integration of convergent thalamic and retrosplenial signals in the presubicular head direction cortex
Open the record for dataset details and reuse information.
Comparative basolateral amygdala connectomics reveals dissociable single-neuron projection patterns to frontal cortex in macaques and mice
<p>Zeisler et al., (2024) <em>Current Biology</em></p> <p> </p> <p>This repository contains data and code necessary to generate the main figures contained in the paper.</p> <p> </p> <p>The macaque data used is available at: https://zenodo.org/records/8319819</p>
Non-reciprocal callosal projections and input gradients underlie interhemispheric communication in binocular visual cortex
GEO Series GSE310829. Mus musculus. 41 samples. Type: Expression profiling by high throughput sequencing.
Crnic Institute Human Trisome Project - Trisomy 21 Model Atlas: PolyA RNA-seq from 9-month old mouse brain cortex tissue
GEO Series GSE272690. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Crnic Institute Human Trisome Project - Trisomy 21 Model Atlas: PolyA RNA-seq from adult mouse brain cortex
GEO Series GSE272568. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA-sequencing of cell populations in mouse Anterior Lateral Motor (ALM) cortex based on four projection targets
GEO Series GSE119182. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Profiling the transcriptome of layer 5 intratelencephalic-projection neurons (IT-PNs) in the mature mouse motor cortex
GEO Series GSE107586. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Crnic Institute Human Trisome Project - Trisomy 21 Model Atlas: PolyA RNA-seq from 6-month old mouse brain cortex tissue ± JAK1/3 inhibition with tofacitinib
GEO Series GSE272693. Mus musculus. 34 samples. Type: Expression profiling by high throughput sequencing.
Crnic Institute Human Trisome Project - Trisomy 21 Model Atlas: PolyA RNA-seq from 5-month old mouse brain cortex tissue
GEO Series GSE272662. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Prelimbic cortex to ventral tegmental area projection regulates early social isolation stress-potentiated heroin seeking in mice
GEO Series GSE293281. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Molecular profiling of insular cortex neurons projecting to the central amygdala
GEO Series GSE163743. Mus musculus. 6 samples. Type: Other.
Mutual Regulation between Satb2 and Fezf2 Promotes Subcerebral Projection Neuron Identity in the Developing Cerebral Cortex
GEO Series GSE68912. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Sequential regulation of glutamatergic and subtype-specific projection neuron identities in the developing cerebral cortex
GEO Series GSE142269. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Genetically distinct parallel projection populations from ventral hippocampus to prefrontal cortex
GEO Series GSE225512. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Astrocytes modulate a specific paraventricular thalamus-prefrontal cortex projection to enhance consciousness recovery from sevoflurane anesthesia in mice
GEO Series GSE240388. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Ketamine reverses stress-induced behavior by restoring excitatory synapses in the basolateral amygdala-projecting infralimbic prefrontal cortex neurons
<p>Coding and data demo</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.