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17 results for “Cellular preservation”
Text-fig. 5. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse sections of flower (a, orthoslice xy0665 close to the apex of placenta; b, orthoslice xy0800 in middle part of placenta) showing remains of calyx with distinct bundles (arrows), ovary wall (ow) and numerous ovules (ov) on the central mushroom-shaped globose placenta (pl) with central column (cc). c: Transverse section of flower (orthoslice xy0620) through perianth and ovary (ow) at a level above the placenta showing ovules (ov) and cellular preservation of the sepal bundles (arrows shown for one sepal); note abaxial surface of sepals with thick-walled epidermal cells, thick cuticle, and fine pointed verrucae. d: Longitudinal section of flower (orthoslice xz0500) showing perigynous position of calyx and semi-inferior ovary (ow, ovary wall) with a central placenta (pl), central column (cc) and numerous ovules (ov); note spiny verrucae on abaxial surface of calyx lobes. Specimens, Mira 100-S153145 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 5. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse sections of flower (a, orthoslice xy0665 close to the apex of placenta; b, orthoslice xy0800 in middle part of placenta) showing remains of calyx with distinct bundles (arrows), ovary wall (ow) and numerous ovules (ov) on the central mushroom-shaped globose placenta (pl) with central column (cc). c: Transverse section of flower (orthoslice xy0620) through perianth and ovary (ow) at a level above the placenta showing ovules (ov) and cellular preservation of the sepal bundles (arrows shown for one sepal); note abaxial surface of sepals with thick-walled epidermal cells, thick cuticle, and fine pointed verrucae. d: Longitudinal section of flower (orthoslice xz0500) showing perigynous position of calyx and semi-inferior ovary (ow, ovary wall) with a central placenta (pl), central column (cc) and numerous ovules (ov); note spiny verrucae on abaxial surface of calyx lobes. Specimens, Mira 100-S153145 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d).
Text-fig. 3. Juglandaceae. Carya (a–x). Scale bars = 1 cm. a–e: USNM PAL 772346. Micro-CT scan surface rendering. a, b: Lateral, c: apical, d: basal views. e: Virtual equatorial transverse section. f–n: USNM PAL 772347. f: Lateral view, reflected light, showing path of saw cut for transverse section of (i). g: Basal view, reflected light. h: Apical view, micro-CT surface rendering. i: Physical transverse section displaying locule and cellular preservation of parts of wall. j–n: Virtual sections from micro-CT scan data. j: Transverse section at apical 1/3 of nut. Note narrow lacunae (arrows). k: Longitudinal section parallel to primary septum, traversing one of the cotyledon lobes and showing secondary septum at base. l: Longitudinal section in plane at right angles to (k) in plane of primary septum, showing divergent placental bundles arising from base of nut (arrows). m: Equatorial transverse section showing two lobes of locule separated by primary septum. n: Transverse section near base of nut showing primary and secondary septa, creating four basal lobes of locule; note diverging placental bundles (arrows). o–x: USNM PAL 772351. o: Lateral view of broken nut with exposed locule cast, reflected light. p: Same orientation of nut, micro-CT surface rendering. q: Same specimen lateral view, rotated 90° from (p), micro-CT surface rendering. r: Apical view, reflected light. s–x: Virtual sections from micro-CT in The Early Middle Eocene Wagon Bed Carpoflora Of Central Wyoming, U.S.A.
Text-fig. 3. Juglandaceae. Carya (a–x). Scale bars = 1 cm. a–e: USNM PAL 772346. Micro-CT scan surface rendering. a, b: Lateral, c: apical, d: basal views. e: Virtual equatorial transverse section. f–n: USNM PAL 772347. f: Lateral view, reflected light, showing path of saw cut for transverse section of (i). g: Basal view, reflected light. h: Apical view, micro-CT surface rendering. i: Physical transverse section displaying locule and cellular preservation of parts of wall. j–n: Virtual sections from micro-CT scan data. j: Transverse section at apical 1/3 of nut. Note narrow lacunae (arrows). k: Longitudinal section parallel to primary septum, traversing one of the cotyledon lobes and showing secondary septum at base. l: Longitudinal section in plane at right angles to (k) in plane of primary septum, showing divergent placental bundles arising from base of nut (arrows). m: Equatorial transverse section showing two lobes of locule separated by primary septum. n: Transverse section near base of nut showing primary and secondary septa, creating four basal lobes of locule; note diverging placental bundles (arrows). o–x: USNM PAL 772351. o: Lateral view of broken nut with exposed locule cast, reflected light. p: Same orientation of nut, micro-CT surface rendering. q: Same specimen lateral view, rotated 90° from (p), micro-CT surface rendering. r: Apical view, reflected light. s–x: Virtual sections from micro-CT
Text-fig. 6. Reyispermum parvum gen. et sp. nov. seeds from the Early Cretaceous Vale de Água locality, Portugal (a, b, d, e: sample 141, c: sample 300); Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz0563) through the median plane of the seed (holotype, S174178) showing the palisade-shaped cells of exotesta and collapsed inner parts of seed coat, raised exotestal tissue (arrow head) immediately adjacent to the lower edge of the hilum (hi), micropyle (mi) and remains of cellular nutritive tissue. b) Longitudinal orthoslice (xz0659) through the micropylar region perpendicular to the median plane showing the exotestal tissue surrounding the transverse micropyle slit (mi). c) Longitudinal orthoslice (yz0500) through the median plane of the seed (S175095) showing raised tissue (arrow head) immediately adjacent to the lower edge of the hilum (hi), micropyle (mi) and poorly preserved cells of the seed coat. d) Longitudinal orthoslice (xz0810) through middle part of seed perpendicular to the median plane (S174178) showing seed coat and remains of cellular nutritive tissue. e) Tangential and longitudinal orthoslice (xz0162) through the seed coat of holotype (S174178) showing thickened, undulate cell walls of exotesta (ex) and the short, thin-walled cells of tegmen (te) with a finely striate wrinkled surface. Scale bars = 250 µm (a, c, d); 125 µm (b, e). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 6. Reyispermum parvum gen. et sp. nov. seeds from the Early Cretaceous Vale de Água locality, Portugal (a, b, d, e: sample 141, c: sample 300); Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz0563) through the median plane of the seed (holotype, S174178) showing the palisade-shaped cells of exotesta and collapsed inner parts of seed coat, raised exotestal tissue (arrow head) immediately adjacent to the lower edge of the hilum (hi), micropyle (mi) and remains of cellular nutritive tissue. b) Longitudinal orthoslice (xz0659) through the micropylar region perpendicular to the median plane showing the exotestal tissue surrounding the transverse micropyle slit (mi). c) Longitudinal orthoslice (yz0500) through the median plane of the seed (S175095) showing raised tissue (arrow head) immediately adjacent to the lower edge of the hilum (hi), micropyle (mi) and poorly preserved cells of the seed coat. d) Longitudinal orthoslice (xz0810) through middle part of seed perpendicular to the median plane (S174178) showing seed coat and remains of cellular nutritive tissue. e) Tangential and longitudinal orthoslice (xz0162) through the seed coat of holotype (S174178) showing thickened, undulate cell walls of exotesta (ex) and the short, thin-walled cells of tegmen (te) with a finely striate wrinkled surface. Scale bars = 250 µm (a, c, d); 125 µm (b, e).
Text-fig. 9. Lusitanispermum choffatii gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz0769) through the median plane of the seed (S174345) showing expanded exotestal cells (ex, arrow head) in the hilar region and well-preserved cellular nutritive tissue with an embedded tiny embryo (asterisk markes the margin of the embryo); note well-developed mesotesta (me) on the raphal side of seed. b) Longitudinal orthoslice (yz0750) in the median plane showing detail of micropylar part of seed with well-preserved exotesta (ex) and mesotesta (me) and tiny embryo with two rudimentary cotyledons (asterisks mark the margin of the cotyledons); note numerous granular bodies in the cellular nutritive tissue that are probably the remains of protein and lipid bodies. c) Transverse orthoslice (xy0311) through seed below hilum showing the bulging exotesta (arrow heads) (S174472); note that the exotestal cells in this region have thinner walls (arrows). d) Transverse orthoslice (xy0900) through the middle of a seed showing the uneven thickening of the anticlinal walls of the exotestal cells (ex), which are thicker towards the outside and very thin towards the inside; note also mesotesta (me) and the well-preserved cellular nutritive tissue (S174472). Scale bars = 500 µm (a, d); 250 µm (b, c). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 9. Lusitanispermum choffatii gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz0769) through the median plane of the seed (S174345) showing expanded exotestal cells (ex, arrow head) in the hilar region and well-preserved cellular nutritive tissue with an embedded tiny embryo (asterisk markes the margin of the embryo); note well-developed mesotesta (me) on the raphal side of seed. b) Longitudinal orthoslice (yz0750) in the median plane showing detail of micropylar part of seed with well-preserved exotesta (ex) and mesotesta (me) and tiny embryo with two rudimentary cotyledons (asterisks mark the margin of the cotyledons); note numerous granular bodies in the cellular nutritive tissue that are probably the remains of protein and lipid bodies. c) Transverse orthoslice (xy0311) through seed below hilum showing the bulging exotesta (arrow heads) (S174472); note that the exotestal cells in this region have thinner walls (arrows). d) Transverse orthoslice (xy0900) through the middle of a seed showing the uneven thickening of the anticlinal walls of the exotestal cells (ex), which are thicker towards the outside and very thin towards the inside; note also mesotesta (me) and the well-preserved cellular nutritive tissue (S174472). Scale bars = 500 µm (a, d); 250 µm (b, c).
Fig. 4. Cellular features associated with T in Soft-Tissue Vessels and Cellular Preservation in Tyrannosaurus rex
Fig. 4. Cellular features associated with T. rex and ostrich tissues. (A) Fragment of demin eralized cortical bone from T. rex, showing parallel-oriented fibers and cell-like microstruc tures among the fibers. The inset is a higher magnification of one of the microstructures seen embedded in the fibrous material. (B) Demin eralized and stained (3) ostrich cortical bone, showing fibrillar, parallel- oriented collagen matrix with osteocytes embed ded among the fibers. The inset shows a high er magnification of one of the osteocytes. Both inset views show elon gate bodies with multi ple projections arising from the external sur face consistent with filipodia. (C) Isolated microstructure from T. rex after fixation. In addition to the multiple filipodial-like projections, internal contents can be seen. The inset shows a second structure with long filipodia and an internal transparent nucleus-like structure. (D) Fixed ostrich osteocyte; inset, ostrich osteocyte fixed and stained for better visualization. Internal contents are discernible, and filipodia can be seen extending in multiple planes from the cell surface. (E and F) SEM images of aldehyde-fixed (3) microstructures isolated from T. rex cortical bone tissues. Scale bars in (A) and (B), 50 um; in (C) and (D), 20 um; in (E), 10 um; in (F), 1 um.
Fig. 3 in Soft-Tissue Vessels and Cellular Preservation in Tyrannosaurus rex
Fig. 3. SEM images of aldehyde-fixed vessels. (A) Isolated vessel from T. rex. (B) Vessel isolated from extant ostrich after demineralization and collagenase digestion (3). (C) Vessel from T. rex, showing internal contents and hollow character. (D) Exploded T. rex vessel showing small round microstructures partially embedded in internal vessel walls. (E) Higher magnification of a portion of T. rex vessel wall, showing hypothesized endothelial nuclei (EN). (F) Similar structures visible on fixed ostrich vessel. Striations are seen in both (E) and (F) that may represent endothelial cell junctions or alternatively may be artifacts of the fixation/dehydration process. Scale bars in (A) and (B), 40 um; in (C) and (D), 10 um; in (E) and (F), 1 um.
Data from: Three-dimensional preservation of cellular and subcellular structures reveal 1.6 billion-year-old probable crown-group red algae
The ~1.6 Ga Tirohan Dolomite of the Lower Vindhyan in central India contains phosphatized stromatolitic microbialites. We report from there uniquely well-preserved fossils interpreted as crown-group rhodophytes (red algae). The filamentous form Rafatazmia chitrakootensis n.gen, n.sp. has uniserial rows of large cells and grows through diffusely distributed septation. Each cell has a centrally suspended, conspicuous rhomboidal disk interpreted as a pyrenoid. The septa between the cells have central structures that may represent pit connections and pit plugs. Another filamentous form, Denaricion mendax n.gen., n.sp., has coin-like cells reminiscent of those in large sulfur-oxidizing bacteria, but much more recalcitrant than the liquid-vacuole-filled cells of the latter. Its wider affinities are uncertain. Ramathallus lobatus n.gen., n.sp. is a lobate sessile alga with pseudoparenchymatous thallus and apparent tetraspore formation, suggesting florideophycean affinity. Rafatazmia and Ramathallus are interpreted as crown-group multicellular rhodophytes, antedating the oldest previously accepted red alga in the fossil record by about 400 million years.
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity
<p>Source code, datasets and outputs. </p>
Data from: Three-dimensional preservation of cellular and subcellular structures reveal 1.6 billion-year-old probable crown-group red algae
Open the record for dataset details and reuse information.
Text-fig. 12. Silutanispermum kvacekiorum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz1170) through the median plane of the seed (S170238) in the micropylar region showing exotestal cells lining the micropylar slit (mi) and hilum (hi); note the well-preserved mesotestal cells (me). b) Longitudinal orthoslice (xz0805) of seed perpendicular to the median plane through the micropylar region showing the transverse micropylar slit (mi) lined by radiating exotestal cells; note abundant mesotestal cells (me). c) Transverse orthoslice (xy0768) through seed below hilum and micropyle showing exotesta (ex) and mesotesta (me) that is strongly developed along the raphe (ra) (S174352). d) Transverse orthoslice (xy2113) through middle of the seed showing well-preserved cellular nutritive tissue with empty cells; note that the raphe (ra) is enclosed in mesotestal tissue (S174352). e) Longitudinal orthoslice (yz0970) through seed coat showing exotesta (ex) of tall palisade-shaped cells and thick mesotesta (me) of low cells (S174352). Scale bars = 500 µm (a, c, d); 250 µm (b); 125 µm (e). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 12. Silutanispermum kvacekiorum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz1170) through the median plane of the seed (S170238) in the micropylar region showing exotestal cells lining the micropylar slit (mi) and hilum (hi); note the well-preserved mesotestal cells (me). b) Longitudinal orthoslice (xz0805) of seed perpendicular to the median plane through the micropylar region showing the transverse micropylar slit (mi) lined by radiating exotestal cells; note abundant mesotestal cells (me). c) Transverse orthoslice (xy0768) through seed below hilum and micropyle showing exotesta (ex) and mesotesta (me) that is strongly developed along the raphe (ra) (S174352). d) Transverse orthoslice (xy2113) through middle of the seed showing well-preserved cellular nutritive tissue with empty cells; note that the raphe (ra) is enclosed in mesotestal tissue (S174352). e) Longitudinal orthoslice (yz0970) through seed coat showing exotesta (ex) of tall palisade-shaped cells and thick mesotesta (me) of low cells (S174352). Scale bars = 500 µm (a, c, d); 250 µm (b); 125 µm (e).
Molecular and Cellular Mechanisms of Heart Failure With Preserved Ejection Fraction
GEO Series GSE270896. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
BCL6 reinforces brown adipocyte cellular identity to preserve thermogenic fitness
GEO Series GSE122746. Mus musculus. 39 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
PRC2 preserves cellular plasticity and restricts intestinal secretory lineage commitment
GEO Series GSE80539. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
PRC2 preserves cellular plasticity and restricts intestinal secretory lineage commitment (ChIP-seq)
GEO Series GSE80502. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Antiviral and anti-inflammatory properties of novel anti-HIV candidate ABX464 promotes specifics RNA splicing while preserving cellular RNA integrity.
GEO Series GSE120109. Homo sapiens. 18 samples. Type: Non-coding RNA profiling by high throughput sequencing.
PRC2 preserves cellular plasticity and restricts intestinal secretory lineage commitment (RNA-seq)
GEO Series GSE80503. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
The 40S-LARP1 complex reprograms the cellular translatome upon mTOR inhibition to preserve the protein synthetic capacity
GEO Series GSE186779. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.