Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
129
datasets available to search
ShareScore release 0.9.0
Dataset results
129 results for “Chimera”
AVANT Workshop "Antibiotic-free pork production: realiy or chimera?"
<p>The aim of the workshop organized by the EU Innovation Action AVANT is to facilitate dialogue and consensus on specific themes pertinent to the future of antibiotic-free pork production. The involvement of significant partners such as SEGES, COOPERL and FVE, alongside other relevant national and international stakeholders, will offer a diverse array of perspectives and expertise crucial for addressing the multifaceted challenges and opportunities of this type of production in the years to come. One significant outcome could be the development of a position paper encompassing the collective insights, agreements, and recommendations arising from the discussions held during the workshop.</p>
Lattice investigations of the chimera baryon spectrum in the Sp(4) gauge theory---Data Release
<p>This release contains the analysis workflow used to prepare the publication <a href="https://arxiv.org/abs/2311.14663" target="_blank" rel="noopener">Lattice investigations of the chimera baryon spectrum in the Sp(4) gauge theory</a>.</p> <p>A Python code for performing the analysis and generating the plots and tables is <a href="https://doi.org/10.5281/zenodo.10929539" target="_blank" rel="noopener">uploaded to Zenodo</a>. See the README therein for details on running the code.</p> <p>For details on the data formats, see the relevant README.md files.</p> <h2>Content of directories and files:</h2> <ul> <li>README.md: This contains general information on the content of the release.</li> <li>raw_data.zip: This compressed file contains all the raw data utilized in the research outlined in arXiv:2311.14663. These data were crucial in generating the results showcased in the paper.</li> <li><span>data.h5: An HDF5 file housing the correlators derived from the raw data through the processing code, <code>generate/transform_h5.py</code>.</span></li> <li><span>metadata.zip: This archive furnishes essential metadata such as ensemble information, fitting intervals, and smearing parameters crucial for extracting masses.</span></li> <li><span>F_meson.csv: Presents the fundamental meson masses extracted via the <code>analysis/analysis_F.py</code> script.</span></li> <li><span>AS_meson.csv: Presents the antisymmetric meson masses extracted via the <code>analysis/analysis_AS.py</code> script.</span></li> <li><span>CB_mass.csv: Presents the chimera baryon masses extracted via the <code>analysis/analysis_CB.py</code> script.</span></li> <li><span>FIT_mass.csv: Offers the AIC scan results conducted through the <code>analysis/analysis_AIC.py</code> script.</span></li> <li><span>FIT_cross_fixAS.csv and FIT_cross_fixF.csv: These files provide cross-check results computed by the</span> <span><code>analysis/analysis_cross.py</code> script, specifically for fixing antisymmetric and fundamental masses, respectively.</span></li> </ul>
Dataset for MD and MM/GBSA-Based Evalulation of Ternary Complexes Induced by Proteolysis Targeting Chimeras (PROTACs) for Targeted Protein Degradation
<p>This is the dataset for all input files, output files/results, and submit script or its templates for running the MD and MMGBSA calculations in the paper. Four compressed archives represent the 4 systems we ran our simulations on. The general workflow for all systems follow the sequence of, after starting pose generated by protein docking, the starting frame for MD and its parameter file is generated in the Tleap folder; the MD trajectories are found in the PMEMD folders; and the energy calculations are found in the MMGBSA folders.</p>
Table S1: Records of bramble shark sightings on 16 December, 2023, offshore of Fujairah, UAE, in the Gulf of Oman. Time is provided in Zulu time (GMT), not in local time. Vessels where sightings occurred are labeled as remotely operated vessels (ROV: Chimera) or human-driven submersibles (Sub: Neptune and Nadir).; Video S1: Video footage of a bramble shark (Echinorhinus brucus) encounter with a submersible at 780 m depth offshore from Fujairah, United Arab Emirates.
<p><span>Table S1: Records of bramble shark sightings on 16 December, 2023, offshore of Fujairah, UAE, in the Gulf of Oman. Time is provided in Zulu time (GMT), not in local time. Vessels where sightings occurred are labeled as remotely operated vessels (ROV: Chimera) or human-driven submersibles (Sub: Neptune and Nadir).</span></p> <p><span>Video S1: Video footage of a bramble shark (<em>Echinorhinus brucus</em>) encounter with a submersible at 780 m depth offshore from Fujairah, United Arab Emirates.</span></p>
Chimera session
<p>This file is the Chimera session modelling the potential binding of archaeal NusA2 on the 30S ribosomal subunit as shown in Figure 3 in our manuscript:</p> <h1><strong>Archaeal NusA2 is the evolutionary ancestor of ribosomal protein eS7 in eukaryotes</strong></h1> <p>Duy Khanh Phung, Simona Pilotto, Dorota Matelska, Fabian Blombach, Nikos Pinotsis, Ladislav Hovan, Francesco Luigi Gervasio, and Finn Werner</p> <p>(under revision)</p>
Raw data for the article "Peptide-Hypervalent Iodine Reagent Chimeras: Enabling Peptide Functionalization and Macrocyclization"
<p>Raw NMR, HPLC and MS data for the article "Peptide-Hypervalent Iodine Reagent Chimeras: Enabling Peptide Functionalization and Macrocyclization" published in Angewandte Chemie, DOI: </p> <p><a href="https://doi.org/10.1002/anie.202306036">https://doi.org/10.1002/anie.202306036</a> </p> <p>The number of the folders either correspond to compounds numbers in the article or the name of the folder is self-describing. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.</p>
Chimeras benchmark data set
<p>The Chimera data set is a benchmark for astronomical software working with multi-wavelength photometry of distant galaxies and quasars. The Chimera data set provides ground truth galaxy and AGN properties, and realistic broad-band photometry (Ultraviolet to Far-infrared). It is a benchmark for validating SED fitting codes that try to infer properties of the host galaxy with an active galactic nucleus or quasar.</p>
Data from: Development of folate receptor targeting chimeras for cancer selective degradation of extracellular proteins
Open the record for dataset details and reuse information.
Figure 1 in A fossil protein chimera; difficulties in discriminating dinosaur peptide sequences from modern cross-contamination
Figure 1. Tandem mass spectrum from high-resolution (HCD) fragmentation analysis of the peptide sequence (GPPGESGAVGPAGPIGSR) matched from our analysis of ostrich bone collagen that is homologous to the peptide proposed as unique to T. rex and B. canadensis.
Figure 2 in A fossil protein chimera; difficulties in discriminating dinosaur peptide sequences from modern cross-contamination
Figure 2. Tandem mass spectrum of the peptide sequence claimed as being endogenous to both dinosaurs with sequence (GLPGESGAVGPAGPPGSR) downloaded from the B. canadensis analysis by Schweitzer et al. [14].
Data from: Crossing phenotype heritability and candidate gene expression in grafted black-lipped pearl oyster Pinctada margaritifera, an animal chimera
Grafting mantle tissue of a donor pearl oyster into the gonad of a recipient oyster results in the formation of a chimera, the pearl sac. The phenotypic variations of this chimera are hypothesized to be the result of interactions between the donor and recipient genomes. In this study, the heritability of phenotypic variation and its association with gene expression were investigated for the first time during P. margaritifera pearl production. Genetic variance was evaluated at different levels, 1) before the graft operation (expression in graft tissue), 2) after grafting (pearl sac tissue expression in chimera) and 3) on the product of the graft (pearl phenotype traits) based on controlled bi-parental crosses and the F1 generation. Donor related genetic parameter estimates clearly demonstrate heritability for nacre weight and thickness, darkness and colour, surface defects and grade, which signifies a genetic basis in the donor oyster. In graft relative gene expression, the value of heritability was superior to 0.20 in for almost all genes, while in pearl sac, heritability estimates were low (h² < 0.10) (except for CALC1 and Aspein). Pearl sac expression seems to be more influenced by residual variance than the graft, which can be explained by environmental effects that influence pearls sac gene expression and act as a recipient additive genetic component. The interactions between donor and recipient are very complex and further research is required to understand the role of the recipient oysters on pearl phenotypic and gene expression variances.
54023 NMA Bellerophon Chimera
This is a 3D model of an ancient marble table support in the National Archaeological Museum of Athens, Room 33. It was found in the Ancient Agora and dates to the 4th c. CE. In mythology, the man in the image is Bellerophon riding his winged horse Pegasus. The Chimera was a fire-breathing female monster with the front part of her body a lion, the middle part a goat, and the back part a dragon. Sometimes, the Chimera is depicted with a snake head at the end of it. **Bibliography**: [Britannica.com](https://www.britannica.com/topic/Chimera-Greek-mythology) #Ancient World 3D This model posting is part of Ancient World 3D, a website that provides curated 3D open access content for Classical Studies. Each model has an etched catalog# and [3D Printable frame](https://skfb.ly/6RO6G) for building a library. The [original model was posted by Scan The World](http://mmf.io/o/54023). This entry was composed by Samantha Schlegel (Dr. Elizabeth Thill, advisor). Source: Objaverse 1.0 / Sketchfab
Supplemental tables for 'Pan-microalgal dark proteome mapping via interpretable deep learning and synthetic chimeras'
<p>Distinguishing genuine microbial proteins from contaminants remains a major bottleneck in genomics, particularly for environmental and non-model organisms where conventional homology-based tools are slow, resource-intensive, and leave large fractions of the "dark proteome" unclassified. LA<sup>4</sup>SR offers a scalable, interpretable framework that classifies algal and bacterial proteins directly from translated sequence data, achieving near-complete recall while accelerating inference by ~ 10,000-fold relative to BLASTP. By revealing that internal sequence features alone can drive robust classification, LA4SR bypasses the need for complete gene models or perfect annotations—opening new opportunities for analyzing complex microbial communities and metagenomes. Interpretability methods further link emergent amino acid signatures to evolutionary and ecological features, highlighting the potential of language models not only to accelerate genomics workflows but also to uncover new biological insights.</p> <p> </p> <p><strong>Table S1 | External spreadsheet. </strong>This spreadsheet contains LA<sup>4</sup>SR performance metrics, technical performance estimations, and BLAST results and runtimes of genomes comprising the algal training data.<strong> </strong></p> <p><strong>Table S2 | External spreadsheet. </strong>Captum attributions for 100 sequences each of algal and bacterial origin obtained using the LayerIntegratedGradients function.</p> <p><strong>Table S3 | External spreadsheet. </strong>Influential motifs found with the DeepMotifMinerPro software introduced in this work (see Data S3).</p> <p><strong>Table S4 | External spreadsheet.</strong> LA4SR and Diamond BLAST results for data from new assemblies from seen species (Fig. S7), contaminated assemblies from unseen genera (Fig. S7), and clean assemblies from unseen genera (Fig. 8). For the LA4SR results for genome assemblies from unseen genera, the genomes were published after the model was trained, and the genera shown were not included in the training dataset. Newly sequenced genomes uploaded to NCBI SRA accession SUB14799921.</p> <p> </p> <p> </p>
FIGURE 22 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 22. Comparison of female LV outline shapes of forms identified as F. balatonica in the literature. A, F. balatonica redrawn from Kovalenko (1976, pl. 12) (Table 1, A8a); B, F. balatonica from Kovalenko (1976) (black line-1) superimposed on F. balatonica from Meisch (2000) (grey line-0; type, A1b, Fig 9B); C, F. balatonica redrawn from Dykan (2006, pl. 14, fig. 8) (Table 1, A9), internal view, reversed for ease of comparison; D, F. balatonica from Dykan (2006) (black line-1) superimposed on F. balatonica from Meisch (2000) (grey line-0; type, A1b, Fig 9B); B and D redrawn from Morphomatica output, outlines standardised for equal surface area; not to scale.
FIGURE 23 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 23. Comparison of outlines of valves from Bashkiria (identified in literature as F. balatonica), with F. balatonica from Lake Balaton as illustrated by Meisch (2000) (Table 1, A1b) and by Petkovski and Karanovic (2000) (Table 1, A1c). A, female RV lateral view (Table 1, A10) redrawn from Popova-Lvova (1965, pl. 2, fig. 9a); B, female RV lateral view (Table 1, A11) redrawn from Popova-Lvova (1972, pl. 5, fig. 1a); C, female RV dorsal view (Table 1, A11) redrawn from Popova-Lvova (1972, pl. 5, fig. 1b); D, female RV from Popova-Lvova (1972) (black line-1) superimposed on female RV from Lake Balaton (Table 1, A1c; grey line-0); E, female LV (Table 1, A12) from Popova-Lvova (1977, pl. 25, fig. 2a); F, female LV from Popova-Lvova (1977) (black line-1) superimposed on female LV from Lake Balaton (Table 1, A1b; grey line-0); D and F redrawn from Morphomatica output, outlines standardised for equal surface area; not to scale.
FIGURE 17 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 17. Fabaeformiscandona levanderi (Hirschmann), comparison of RV shapes in lateral view, all from Lake Serwy, Poland, transmitted light images by T. Namiotko. A–F, female (RB3b–RB3g); G, mean outline of digitised outlines of A–F; H–I, male.
FIGURE 20 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 20. Fabaeformiscandona levanderi (Hirschmann), SEM images (by Martin Gross, UMJGP) of male valves from Lake Serwy, Poland. A–D, LV (220208-07): A, internal lateral view, bulbous flange arrowed; B, detail of posterior of A; C, detail of antero-ventral part of A, showing bulbous flange overhanging ventral margin; D, external lateral view, bulbous flange arrowed; E– F, RV (220208-08): E, external lateral view, bulbous flange arrowed; F, internal lateral view, bulbous flange arrowed. Although both from the same sample, the two valves were separate and should not be assumed to belong to the same individual.
FIGURE 12 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 12. Comparison of male sexual limbs. A–C, Fabaeformiscandona balatonica (Daday), type specimen, Lake Balaton, Hungary, from Meisch (2000) (B and C reversed for ease of comparison). D–F, Fabaeformiscandona levanderi (Hirschmann), D, from Crapina Jijila lake, Romania, from Danielopol (1969); E–F, from Lake Serwy, Poland, original images by T. Namiotko. A, D, hemipenis; B, E, right 5th limb endopodite (clasper); C, F, left 5th limb endopodite (clasper). L-Lo, lateral lobe of the peniferum; M, inner medial process. Distal part of M-process arrowed (a), lateral hook of bursa copulatrix arrowed (b).
FIGURE 26 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 26. Comparison of valve outlines of Candoniella suzini Schneider and Fabaeformiscandona caudata (Kaufmann). A, B, external and internal lateral views of RV of C. suzini (redrawn from Suzin 1956, plate 13, figs 19 and 20); C, juvenile (A-2) LV external lateral view of F. caudata from Lake Geneva (image provided by Laurent Decrouy); D, reversed RV outline of C. suzini (grey line-0; Fig. 26A) superimposed on A-2 LV outline of F. caudata (black line-1; Fig. 26C), standardised for equal surface area (redrawn from Morphomatica output); not to scale, arrows indicate anterior direction.
FIGURE 9 in Accidental monstrosities: Taxonomic chimeras in Ostracoda (Crustacea)
FIGURE 9. Fabaeformiscandona balatonica (Daday), comparative morphology of male and female valves from Lake Balaton: A, male LV internal; B, female LV internal; C, male RV internal; D, female RV internal. A and B from Meisch (2000, figs 41A and 42A), with permission; C and D redrawn from Petkovski & Karanovic (2000, fig. 4).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.