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89 results for “Co1”
Figs 30–35 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Figs 30–35. Variation of the male palps, left palps, prolateral views. 30–33. Loxosceles tolantongo sp. nov. 30–32. Tourist Center Grutas de Tolantongo, Municipality of Cardonal, Hidalgo (type locality). 33. 500 m west of the entrance No. 5 to the Tourist Center Grutas de Tolantongo, Municipality of Cardonal, Hidalgo. 34–35. Loxosceles jaca Gertsch & Ennik, 1983. 2.5 km north of Jacala de Ledezma, Municipality of Jacala de Ledezma, Hidalgo. Scale bars = 0.5 mm.
Fig. 56 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Fig. 56. Maximum likelihood tree inferred from the concatenated matrix (CO1 + ITS2) of species of Loxosceles Heineken & Lowe, 1832 from Mexico. Colors of branches and bars indicate different species. Numbers above bars represent the delimitation methods: 1 = morphology (M); 2 = neighbor joining (NJ); 3 = ABGD with initial partitions (IP); 4–5 = ABGD with recursive partitions (RP); 6 = GMYC yule analysis; 7 = GMYC coalescent analysis; 8 bPTP with ML; 9 = bPTP with IB. Numbers below bars represent species recovered for each delimitation method. Red numbers correspond to Bayesian posterior probabilities, black numbers are bootstrap support values from the ML analysis.
Figs 20–25 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Figs 20–25. Loxosceles tolantongo sp. nov., ♂ holotype (CNAN-T01317). 20–22. Left palp, prolateral, dorsal and retrolateral views, respectively. 23–25. Detail of the bulb and embolus, retrolateral, dorsal and apical views, respectively. Scale bars: 20–22 = 0.5 mm; 23–25 = 0.2 mm.
Fig. 54 in Description of a new species of Loxosceles Heineken & Lowe (Araneae, Sicariidae) recluse spiders from Hidalgo, Mexico, under integrative taxonomy: morphological and DNA barcoding data (CO1 + ITS2)
Fig. 54. Maximum likelihood tree inferred from CO1 gene of species of Loxosceles Heineken & Lowe, 1832 from Mexico. Colors of branches and bars indicate different species. Numbers above bars represent the delimitation methods: 1 = morphology (M); 2 = neighbor joining (NJ); 3 = ABGD with initial partitions (IP); 4–6 = ABGD with recursive partitions (RP); 7 = GMYC yule analysis; 8 = GMYC coalescent analysis; 9 = bPTP with ML; 10 = bPTP with IB. Numbers below bars represent species recovered for each delimitation method. Red numbers on branches correspond to Bayesian posterior probabilities, black numbers are bootstrap support values from the ML analysis.
Figure 6 in Integrated morphological, CO1 and distributional analysis confirms many species in the Iridomyrmex anceps (Roger) complex of ants
Figure 6. Variation in gastric pubescence among selected species of the Iridomyrmex anceps complex. A. Sp. B (specimen RHYIR 070), dorsal view. B. Sp. K (specimen RHYIR 076), dorsal view. C. Sp. M (specimen IRIDO 249), lateral view. D. Sp. N (specimen RHYIR 095), lateral view. E. Sp. O (specimen IRIDO 251-16), dorsal view. F. Sp. P (specimen IRIDO 250-16), dorsal view. Scale bars = 0.1 mm.
Figure 5 in Integrated morphological, CO1 and distributional analysis confirms many species in the Iridomyrmex anceps (Roger) complex of ants
Figure 5. Distribution records of sequenced specimens from the Iridomyrmex anceps complex in Australia. Monsoonal tropics region shaded in grey. A. Species A, G, H and I. B. Species B, J, K, L, M, N, O and R. Abbreviations: WA—Western Australia, NT— Northern Territory, Qld—Queensland.
Figure 3 in Integrated morphological, CO1 and distributional analysis confirms many species in the Iridomyrmex anceps (Roger) complex of ants
Figure 3. Scape length in relation to head length for selected species. A. Species A, G, H, I and J. B. Species B, K, L, M and N.
Figure 2 in Integrated morphological, CO1 and distributional analysis confirms many species in the Iridomyrmex anceps (Roger) complex of ants
Figure 2. Summary CO1 tree of the 82 sequenced specimens of Iridomyrmex anceps. Maximum-likelihood phylogeny inferred using IQ-TREE. Black and red circles indicate bootstrap support values ≥90 and ≥70, respectively. The full CO1 tree is shown in Supplementary Figure 1. Abbreviations: WA—Western Australia, NT—Northern Territory, Qld—Queensland, PNG—Papua New Guinea.
Figure 1 in Integrated morphological, CO1 and distributional analysis confirms many species in the Iridomyrmex anceps (Roger) complex of ants
Figure 1. Head (A) and lateral (B) views of a typical member of the Iridomyrmex anceps complex (sp. A; specimen IRIDO217-16). Scale bars = 1 mm.
Figure 1 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes
Figure 1. PCR images of eight Grapsoidea species. "1" is S. sinensis; "2" is C. sinensis; "3" is P. bidens; "4" is H. latimera; "5" is H. tientsinensis; "6" is H. wuana; "7" is H. sanguineus; "8" is V. litterata.
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I in Phylogenetic relationship among slender loris species (Primates, Lorisidae: Loris) in Sri Lanka based on mtDNA CO1 barcoding
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I (CO1) sequences from 7 different slender loris (Loris) taxas, rooted using slow loris (Nycticebus) sequences deposited in the GenBank.
Fig. 3 in Phylogenetic relationships of Eurema butterflies from Peninsular Malaysia inferred from CO1 and 28S gene sequences with emphasis on Eurema hecabe
Fig. 3. Maximum Likelihood output phylogram for CO1-28S concatenated analysis showing seven major clades representing the seven Eurema species obtained from this study. Bootstrap scores are shown at the branching points. The tree was rooted with the genus Graphium. The butterfly figures show the comparison of morphology among the species corresponding to their respective clades. Figures of butterflies provided as upperside of the wings (left) and downside of wings (right).
Fig. 1 in Phylogenetic relationships of Eurema butterflies from Peninsular Malaysia inferred from CO1 and 28S gene sequences with emphasis on Eurema hecabe
Fig. 1. The geographical sites where samplings have been conducted in Peninsular Malaysia. N, northern area; E, eastern area; W, western area; S, southern area. The dots indicate the distribution of various sampling sites in this study. Triplet letter represents the site code.
Fig. 2 in Phylogenetic relationships of Eurema butterflies from Peninsular Malaysia inferred from CO1 and 28S gene sequences with emphasis on Eurema hecabe
Fig. 2. Phylogenetic tree of Maximum-Likelihood method showing the comparison of phylogram as inferred from partial sequences of mtDNA CO1 and 28S rDNA genes. The bootstrap scores obtained from 1,000 replicates for ML/MP analyses are shown at the branching point. The trees were rooted with the genus Graphium.
CO1 Sequences and Material Table of Western Palearctic Weevil Taxa
<p>The ZIP file contains the CO1 sequence dataset and its corresponding material table from the research article:<br> Schütte A, Stüben PE, Astrin JJ (2023) Molecular Weevil Identification Project: A Thoroughly Curated Barcode Release of 1300 Western Palearctic Weevil Species (Coleoptera: Curculionoidea) - <em>Biodiversity Data Journal</em> <strong>11</strong>.</p>
Fig. 2 in Genetic diversity of Maghrebian Hottentotta (Scorpiones: Buthidae) scorpions based on CO1: new insights on the genus phylogeny and distribution
Fig. 2. Phylogram showing phylogenetic relationships estimated using Bayesian Inference as described in the text. Numbers at branches are Bayesian posterior probabilities and ML bootstrap percentages respectively. The tree was rooted with Scorpio fuliginosus (not shown). Codes refer to Table 1.
Fig. 1 in Genetic diversity of Maghrebian Hottentotta (Scorpiones: Buthidae) scorpions based on CO1: new insights on the genus phylogeny and distribution
Fig. 1. Map showing the sampling locations of Hottentotta from Morocco included in this study. The estimated distribution of both Hottentotta species proposed by Vachon (1952) is indicated. The clades resolved in Fig. 2 are noted. Specimen codes follow Table 1.
GenBank + BOLD CO1 Eukaryotic representative sequence set
<p>This is a representative sequence set for cytochrome oxidase subunit 1 (CO1 or COI) combining all available eukaryotic CO1 sequences from GenBank and BOLD, clustered at 99% similarity.</p> <p> </p> <p>TODO:</p> <p>generate and add 7-level taxonomies for each sequence in this rep set.</p>
CO1 reference sequences dataset of the sedDNA Chironomidae study by Blattner et al. 2024
<p>This dataset contains the CO1 reference sequences used to identify the sedDNA metabarcoding reads in the study entitled "Sediment core DNA-Metabarcoding and chitinous remain identification: Integrating complementary methods to characterise Chironomidae biodiversity in lake sediment archives", which was submitted to Molecular Ecology Resources.</p>
Figure S1 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes
Figure S1. Nucleotide sequences alignment information of the CO1 genes of eight Grapsoidea species.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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