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24 results for “Comprehensive information”
GRiMeDB: a comprehensive global database of methane concentrations and fluxes in fluvial ecosystems with supporting physical and chemical information
The Global River Methane Database (GriMeDB) is a compilation of measurements of CH4 concentrations and fluxes for flowing water environments derived from publications, reports, data repositories, and other outlets between 1973 and 2021. Assembly of GRiMeDB was motivated by the goal of having a centralized, standardized resource to facilitate further studies of CH4 pattern and process in flowing water systems, upscaling efforts, and identification of tendencies in when, where, and how CH4 has been sampled in streams and rivers across the world. Thus, CH4 data are supported by concurrent observations (as available) of aquatic CO2, N2O, temperature, conductivity, pH, dissolved oxygen, nitrogen, phosphorus, organic carbon, and discharge, along with site data (latitude, longitude, elevation, and [as available]: stream order, elevation, channel slope, catchment size, and codes for distinct or disturbed channel types). GRiMeDB includes over 24,000 records of CH4 concentration and greater than 8,000 flux measurements from over 5,000 unique sites, most of which are resolved to the daily time scale.
Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis
<p>We performed comprehensive epigenetic profiling in immune cell samples from patients with ankylosing spondylitis and healthy controls. <br><br><em>Note: Due to Zenodo updating their maximum file limit to 100 files, version 4 </em>(v4) <em>of this archive has been split into 5 compressed archive (tar.gz) files containing all previous and additional files. <br><br></em>Version 4 of this archive (updated 03/06/2025) adds 4 files to the archive that were omitted in previous versions which have now been made available. These were: <em><br></em></p> <ul> <li>RNA_CD8_raw_counts.txt.gz</li> <li>RNA_CD8_normalised_counts.txt.gz</li> <li>RNA_CD14_raw_counts.txt.gz</li> <li>RNA_CD14_normalised_counts.txt.gz </li> </ul> <p><em>--------------------------------------------------------------------------------------------------------------------------</em></p> <p><strong>RNA-seq/ATAC-seq/ChIPm/eRNA: </strong>Raw and normalised count data for each gene or epigenetic peak in CD4+ T cells, CD8+ T cells, and CD14+ monocytes from AS patients and healthy controls. File name is in the format: "modality_cell-type_raw/normalised_counts.txt.gz". Table S2 shows which experiments were performed on which samples. </p> <p>This data can be found in the "Raw_Counts.tar.gz" and "Normalised_Counts.tar.gz" archives. </p> <p>--------------------------------------------------------------------------------------------------------------------------</p> <p><strong>ChromHMM: </strong>We used ChromHMM to integrate epigenomic data into a 14-emission state model detailing chromatin functionality in AS patients and healthy controls. ChromHMM filenames are in the format: "ChromHMM_sampleID_celltype_n.bed.gz" where n is the number of states in the ChromHMM emission model.</p> <p>This data can be found in the "ChromHMM_AS_HV.tar.gz" archive. </p> <p>--------------------------------------------------------------------------------------------------------------------------</p> <p><strong>Capture-C: </strong>We performed Capture-C to detect chromosome looping interactions between gene promoters and SNPs associated with ankylosing spondylitis. Capture-C count data are shown in the format: "CaptureC_celltype_gene_Pro/SNP_normalised.unionbdg". We used PeakY to calculate a score for each interaction. PeakY scores are given in the following format: "PeakY_AS/HV_celltype_tier_chrloc_gene_Pro/SNP.txt". gene_Pro and gene_SNP relate to the baitsets given in Table S8.</p> <p>This data can be found in the "CapC_Count_Data.tar.gz" and "PeakY_regions.tar.gz" archives. </p>
When text simplification is not enough: Could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?
<p>Background: Dietary supplements are widely used. However, dietary supplements are not always safe. For example, an estimated 23,000 emergency room visits every year in the United States were attributed to adverse events related to dietary supplement use. With the rapid development of the Internet, consumers usually seek health information including dietary supplement information online. To help consumers access quality online dietary supplement information, we have identified trustworthy dietary supplement information sources and built an evidence-based knowledge base of dietary supplement information—the integrated DIetary Supplement Knowledge base (iDISK) that integrates and standardizes dietary supplement related information across these different sources. However, as information in iDISK was collected from scientific sources, the complex medical jargon is a barrier for consumers' comprehension. Objective: To assess how different approaches to simplify and represent dietary supplement information from iDISK will affect lay consumers' comprehension.</p> <p>Methods: Using a crowdsourcing platform, we recruited participants to read dietary supplement information in four different representations from iDISK: (1) original text, (2) syntactic and lexical text simplification, (3) manual text simplification, and (4) a graph-based visualization. We then assessed how the different simplification and representation strategies affected consumers' comprehension of dietary supplement information in terms of accuracy and response time to a set of comprehension questions.</p> <p>Results: With responses from 690 qualified participants, our experiments confirmed that the manual approach, as expected, had the best performance for both accuracy and response time to the comprehension questions, while the graph-based approach ranked the second outperforming other representations. In some cases, the graph-based representation outperformed the manual approach in terms of response time.</p> <p>Conclusions: A hybrid approach that combines text and graph-based representations might be needed to accommodate consumers' different information needs and information seeking behavior.</p>
CA Jobs Dataset: Comprehensive Job Count Information by Company - February, 2023
<p><a href="https://tarta.ai/open-data/datasets/number-of-jobs-by-company-in-CA-0223">This dataset</a> provides a comprehensive view of the job market, highlighting the companies and cities that have the highest number of job opportunities.</p> <p>The <a href="https://tarta.ai/open-data/datasets">Tarta.ai dataset</a> is a valuable resource for anyone interested in the job market and provides a comprehensive view of the employment landscape across different industries and regions.</p> <p>This dataset was created by Tarta.ai and contains information on the number of jobs by company and city in California, with features such as:</p> <p>• Company name<br> • City<br> • State<br> • Number of active jobs</p>
When text simplification is not enough: Could a graph-based visualization facilitate consumers’ comprehension of dietary supplement information?
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Behavioural and neurophysiological data from experiments on the impact of spatial frequency information to action comprehension
<p>Understanding object-directed actions performed by others is central to everyday life. This ability is thought to rely on the interaction between the dorsal action observation network (AON) and a ventral object recognition pathway. On this view, the AON would encode action kinematics, and the ventral pathway, the most likely intention afforded by the objects. However, experimental evidence supporting this model is still scarce. Here, we aimed to disentangle the contribution of dorsal vs. ventral pathways to action comprehension by exploiting their differential tuning to lowspatial frequencies (LSFs) and high-spatial frequencies (HSFs). We filtered naturalistic action images to contain only LSF or HSF and measured behavioral performance and corticospinal excitability (CSE) using transcranial magnetic stimulation (TMS). Actions were embedded in congruent or incongruent scenarios as defined by the compatibility between grips and intentions afforded by the contextual objects. Behaviorally, participants were better at discriminating congruent actions in intact than LSF images. This effect was reversed for incongruent actions, with better performance for LSF than intact and HSF. These modulations were mirrored at the neurophysiological level, with greater CSE facilitation for congruent than incongruent actions for HSF and the opposite pattern for LSF images. Finally, only for LSF did we observe CSE modulations according to grip kinematics. While results point to differential dorsal (LSF) and ventral (HSF) contributions to action comprehension for grip and context encoding, respectively, the negative congruency effect for LSF images suggests that object processing may influence action perception not only through ventral-to-dorsal connections, but also through a dorsal-to-dorsal route involved in predictive processing.</p>
The first comprehensive revision of all the species attributed to Melomys led J. I. Menzies in 1996 to resurrect the genus Paramelomys and to redefine its morphologicallimits and species content. Menzies created P. gressitti as a new species belonging to a group displaying morphological similarities and including also P. lorentzii and P. moncktoni. Monotypic Distribution. E New Guinea. Descriptive notes. Head-body 135-162 mm, hindfoot 30-34 mm; no specific data are available for body weight. Gressitt's Mosaic-tailed Rat is a medium-sized Paramelomys with a soft, thick and woolly pelage, a long narrow foot, and a tail with three hairs per scale. It exhibits a medium-sepia dorsal pelage and a gray-buff ventral one. Tail is slightly shorter (99%) than head-body length. The skull has a narrow zygomatic plate. Habitat. Moist tropical mountain forest between 2300 m and 2400 m. Food and Feeding. No information. Breeding. No information. Activity patterns. Gressitt's Mosaic-tailed Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List owing to its small geographic range (less than 3500 km?*) and the destruction ofits habitat by mining and logging activities. The major threat to Gressitt's Mosaic-tailed Rat is ongoing habitat degradation caused by nearby human populations; habitat on Mount Kandy has been destroyed by gold-miners and wood-cutters. Bibliography. Menzies (1996). in Muridae
The first comprehensive revision of all the species attributed to Melomys led J. I. Menzies in 1996 to resurrect the genus Paramelomys and to redefine its morphologicallimits and species content. Menzies created P. gressitti as a new species belonging to a group displaying morphological similarities and including also P. lorentzii and P. moncktoni. Monotypic Distribution. E New Guinea. Descriptive notes. Head-body 135-162 mm, hindfoot 30-34 mm; no specific data are available for body weight. Gressitt's Mosaic-tailed Rat is a medium-sized Paramelomys with a soft, thick and woolly pelage, a long narrow foot, and a tail with three hairs per scale. It exhibits a medium-sepia dorsal pelage and a gray-buff ventral one. Tail is slightly shorter (99%) than head-body length. The skull has a narrow zygomatic plate. Habitat. Moist tropical mountain forest between 2300 m and 2400 m. Food and Feeding. No information. Breeding. No information. Activity patterns. Gressitt's Mosaic-tailed Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List owing to its small geographic range (less than 3500 km?*) and the destruction ofits habitat by mining and logging activities. The major threat to Gressitt's Mosaic-tailed Rat is ongoing habitat degradation caused by nearby human populations; habitat on Mount Kandy has been destroyed by gold-miners and wood-cutters. Bibliography. Menzies (1996).
Human Phenotype Ontology: Standardized Framework Cataloging Comprehensive Phenotypic Information
<p><strong>ABSTRACT:</strong></p> <p>The Human Phenotype Ontology (HPO) is a standardized and comprehensive framework that catalogs and organizes phenotypic information related to human diseases and genetic disorders. It provides a structured vocabulary of terms to describe observable traits and abnormalities associated with various medical conditions. This dataset showcases the Human Phenotype Ontology (HPO) by including HPO IDs, names, descriptions, and additional references. The HPO IDs serve as unique identifiers for specific phenotypes. The names provide concise labels for the phenotypic traits, while the descriptions offer detailed explanations of their characteristics. In addition to the essential information, the dataset includes references that further describe and support the understanding of diverse phenotypes. These references can be used to explore the scientific literature, studies, or clinical resources associated with each phenotype. By combining HPO IDs, names, descriptions, and references, the dataset offers a comprehensive overview of different phenotypes, facilitating research, diagnostics, and the exploration of genotype-phenotype relationships.</p> <p><strong>Instructions</strong>:</p> <p>The data was downloaded as an .obo file then converted to a .csv file. Unrelated columns were removed and a references column was added. </p> <p><strong>Acknowledgements</strong>:</p> <p><a>Sebastian Köhler</a>, <a>Michael Gargano</a>, <a>Nicolas Matentzoglu</a>, <a>Leigh C Carmody</a>, <a>David Lewis-Smith</a>, <a>Nicole A Vasilevsky</a>, <a>Daniel Danis</a>, <a>Ganna Balagura</a>, <a>Gareth Baynam</a>, <a>Amy M Brower</a>, </p> <p><a>Tiffany J Callahan</a>, <a>Christopher G Chute</a>, <a>Johanna L Est</a>, <a>Peter D Galer</a>, <a>Shiva Ganesan</a>, <a>Matthias Griese</a>, <a>Matthias Haimel</a>, <a>Julia Pazmandi</a>, <a>Marc Hanauer</a>, <a>Nomi L Harris</a>, <a>Michael J Hartnett</a>, <a>Maximilian Hastreiter</a>, <a>Fabian Hauck</a>, <a>Yongqun He</a>, <a>Tim Jeske</a>, <a>Hugh Kearney</a>, <a>Gerhard Kindle</a>, <a>Christoph Klein</a>, <a>Katrin Knoflach</a>, <a>Roland Krause</a>, <a>David Lagorce</a>, <a>Julie A McMurry</a>, <a>Jillian A Miller</a>, <a>Monica C Munoz-Torres</a>, <a>Rebecca L Peters</a>, <a>Christina K Rapp</a>, <a>Ana M Rath</a>, <a>Shahmir A Rind</a>, <a>Avi Z Rosenberg</a>, <a>Michael M Segal</a>, <a>Markus G Seidel</a>, <a>Damian Smedley</a>, <a>Tomer Talmy</a>, <a>Yarlalu Thomas</a>, <a>Samuel A Wiafe</a>, <a>Julie Xian</a>, <a>Zafer Yüksel</a>, <a>Ingo Helbig</a>, <a>Christopher J Mungall</a>, <a>Melissa A Haendel</a>, <a>Peter N Robinson</a></p> <p><em>Nucleic Acids Research</em>, Volume 49, Issue D1, 8 January 2021, Pages D1207–D1217, <a href="https://doi.org/10.1093/nar/gkaa1043">https://doi.org/10.1093/nar/gkaa1043</a></p> <p><strong>Human Phenotype Ontology downloads</strong> <strong>page:</strong> https://hpo.jax.org/app/data/ontology</p> <p><strong>U-BRITE last update: </strong>7/6/23</p> <p> </p>
Development of Patient Centered Virtual Multimedia Interactive Informed Consent Tool to Improve Patient Comprehension and Consent
ClinicalTrials.gov study NCT02537886. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Impact of Readability Improvements on the Comprehension of Written Information Given to Clinical Trial Patients: a RCT
ClinicalTrials.gov study NCT00908557. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Supporting information for: Comprehensive high‐precision relocation of seismicity on the Island of Hawai‘i 1986–2018: seismicity animations
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Data from: Fine-grain, large-domain climate models based on climate station and comprehensive topographic information improve microrefugia detection
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Behavioural and neurophysiological data from experiments on the impact of spatial frequency information to action comprehension
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ChEMBL Data for 'Achieving Well-Informed Decision-Making in Drug Discovery: A Comprehensive Calibration Study using Neural Network-Based Structure-Activity Models'
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Data from: Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection
Current advances in sequencing technologies and bioinformatics revealed the genomic background of rice, a staple food for the poor people, and provided the basis to develop large genomic variation databases for thousands of cultivars. Proper analysis of this massive resource is expected to give novel insights into the structure, function, and evolution of the rice genome, and to aid the development of rice varieties through marker assisted selection or genomic selection. In this work we present sequencing and bioinformatics analyses of 104 rice varieties belonging to the major subspecies of Oryza sativa. We identified repetitive elements and recurrent copy number variation covering about 200 Mbp of the rice genome. Genotyping of over 18 million polymorphic locations within O. sativa allowed us to reconstruct the individual haplotype patterns shaping the genomic background of elite varieties used by farmers throughout the Americas. Based on a reconstruction of the alleles for the gene GBSSI, we could identify novel genetic markers for selection of varieties with high amylose content. We expect that both the analysis methods and the genomic information described here would be of great use for the rice research community and for other groups carrying on similar sequencing efforts in other crops.
Data from: Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection
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Generation of a Comprehensive Epigenomic Atlas in Clear Cell Renal Cell Carcinoma Informs Kidney Cancer Progression and Heritability
GEO Series GSE309697. Homo sapiens. 265 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Comprehension of Research Informed Consent When Applied Through a Telemedicine Medium
ClinicalTrials.gov study NCT02541799. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Informed Consent for Hysterectomy: Effectiveness of Audio-visual Presentations on Patient Comprehension
ClinicalTrials.gov study NCT01933139. IPD Sharing: Not stated. Countries: 1. Publications: 0.
The Age of OrthoInfo: A Randomized Controlled Trial Evaluating Patient Comprehension of Informed Consent in a Private Practice
ClinicalTrials.gov study NCT02694237. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.