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142 results for “Cytochrome oxidase I”
Fig. 7. Maximum-likelihood tree for the mitochondrial DNA gene Cytochrome Oxidase C subunit 1 in A new species of the catfish Neoplecostomus (Loricariidae: Neoplecostominae) from a coastal drainage in southeastern Brazil
Fig. 7. Maximum-likelihood tree for the mitochondrial DNA gene Cytochrome Oxidase C subunit 1 for specimens of Neoplecostomus microps from rio Paraíba do Sul, rio Guapi- Açu and rio Macaé, and of Neoplecostomus paraty, using TN93+G model (n=21). Neoplecostomus paranensis and Neoplecostomus ribeirensis were used as outgroups.
Fig. 11. Bayesian inference trees. A. 16S rRNA dataset. B. Cytochrome oxidase I in Designation of a neotype for Myxicola infundibulum (Montagu, 1808) (Annelida: Sabellidae) and a new species from the UK
Fig. 11. Bayesian inference trees. A. 16S rRNA dataset. B. Cytochrome oxidase I gene dataset. The first value at each node represents maximum likelihood bootstrap support, the second the Bayesian posterior probabilities and the third the maximum parsimony bootstrap support.
Figure 2. Partial cytochrome oxidase c in A new bat species of the genus Myotis with comments on the phylogenetic placement of M. keaysi and M. pilosatibialis
Figure 2. Partial cytochrome oxidase c subunit Iphylogeny resulting from bayesian inference and maximum likelihood inference. The Bayesian analysis was conducted in MrBayes and maximum likelihood trees were generated using IQ-TREE with 100 bootstraps and 1000 replicates. Scores are bootstrap and probabilities values. Nodal support isshownright andleftof slashes (" /̎) respectively.
Fig. 3. Cytochrome c oxidase subunit I in Analysis of COI gene, prevalence, and intensity of the bat fly Cyclopodia greeffi on roosting straw-coloured fruit bat Eidolon helvum in Southwest Nigeria
Fig. 3. Cytochrome c oxidase subunit I (COI) gene sequence phylogeny showing the relationship between Cyclopodia greeffi and other species of the same and different genera. Values obtained from Bayesian posterior are presented as supports at the nodes. BI – Bayesian posterior probability value.
MetaCOXI: An integrated collection of metazoan cytochrome oxidase subunit-I DNA sequences
<p><strong>MetaCOXI Sequences Taxonomy and Metadata</strong></p> <p>This collection is based on the integration of the European Nucleotide Archive (ENA, release 142) and the Barcode of Life Data Systems (BOLD: <a href="http://www.boldsystems.org/">http://www.boldsystems.org/</a>) data.</p> <p><strong>CONTENT: </strong>Currently it contains 5,608,848 entries of metazoan COXI sequences and their corresponding taxonomic classification and metadata. <em>MetaCOXI_Seqs.tar.gz</em> contains the full sequence collection in 'fasta' format. <em>MetaCOXI_Taxonomy_Metadata.tar.gz</em> contains the entries-associated taxonomy path and additional metadata</p> <p>Taxonomic path are provided for the following seven levels with their NCBI-TaxIDs: Kingdom, Phylum, Class, Order, Family, Genus, Species.</p> <p>For additional information visit: https://github.com/bachob5/MetaCOXI</p>
MetaCOXI: An integrated collection of metazoan cytochrome oxidase subunit-I DNA sequences
<p><strong>MetaCOXI Sequences in fasta format</strong></p> <p>This collection is based on the integration of the European Nucleotide Archive (ENA, release 142) and the Barcode of Life Data Systems (BOLD: http://www.boldsystems.org/) data.</p> <p><strong>CONTENT: </strong>Currently it contains 5,608,848 entries of metazoan COXI sequences and their corresponding taxonomic classification and metadata. MetaCOXI_Seqs_1.tar.gz contains the full sequence collection in 'fasta' format. MetaCOXI_Taxonomy_Metadata.tar.gz contains the entries-associated taxonomy path and additional metadata</p> <p>Taxonomic path are provided for the following seven levels with their NCBI-TaxIDs: Kingdom, Phylum, Class, Order, Family, Genus, Species.</p> <p>For additional information visit: https://github.com/bachob5/MetaCOXI</p>
Fig. 1. The Neighbor Joining tree for 37 in Taxonomic Diversity Of The Genus Tor (Cyprinidae) From Aceh Waters In Indonesia Based On Cytochrome Oxidase Sub-Unit I (Coi) Gene
Fig. 1. The Neighbor Joining tree for 37 sequences of Tor from seven locations in Aceh Province estimated using 1000 bootstrap replications.
Fig. 2. Genealogical relationships among 11 cytochrome oxidase subunit 1 in Population genetics of Oligonychus perseae (Acari: Tetranychidae) collected from avocados in Mexico and California
Fig. 2. Genealogical relationships among 11 cytochrome oxidase subunit 1 (COI) haplotypes detected in Oligonychus perseae populations in California, Mexico, and Costa Rica. Additional congeneric and outgroup sequences were retrieved from GenBank. Maximum likelihood tree constructed from a 305 base pair section of COI using PhyML. Support (aLRT) for major branches is shown.
Fig. 5. Maximum Likelihood tree, produced with Cytochrome oxidase subunit I in Morphological and Molecular Evidence Reveals the Longnose Skate (Marini, 1933) to be a Senior Synonym of Concha, Caira, Ebert & Pompert 2019.
Fig. 5. Maximum Likelihood tree, produced with Cytochrome oxidase subunit I (COI) sequences of Dipturus argentinensis, D. lamillai, Zearaja brevicaudata, Z. chilensis, Z. nasuta and Amblyraja doellojuradoi as outgoup. Barcode Index Number assigned by Barcode of Life Datasystem (A) and the results of species delimitation analyses using bPTP (B) and ABGD (C) algorithms are shown as vertical bars on the right. Dipturus lamillai sequences are marked in bold.
Fig. 5 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 5. Distribution and frequency of Prosthenorchis elegans haplotypes (A–F) and haplogroups (I–II) by locality and individual. URRAS: Unidad de Rescate y Rehabilitacíon de Animales Silvestres, Universidad Nacional de Colombia; AMVA: Area Metropolitana del Valle de Aburŕa; WCS: Wildlife Conservation Society-Colombia.
Fig. 4 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 4. Phylogenetic tree obtained using Bayesian Inference (BI) and Maximum Likelihood (ML); node supports are provided for BI\ML. Outgroup taxa: Oncicola sp, AF417000; O. luehe = Oncicola luehe, JN710452; M. ingens = Macracanthorhynchus ingens, AF416997; M. hirudinaceus = Macracanthorhynchus hirudinaceus, FR856886; O. tortuous = Oligacanthorhynchus tortuous, AF416999.
Fig. 3 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 3. Haplotype network of Prosthenorchis elegans. Network shows relationships among P.elegans haplotypes (A–F) recovered from Saguinus leucopus and Cebus albifrons based on 633 bp of COI. All branches are of unit length (one mutational step). Labeled open circles represent observed haplotypes; areas of circles are proportional to the number observed for each haplotype. Filled circles indicate inferred haplotypes not found among sampled individuals. Double lines indicate variable sites (49, 274 and 293) resulting in changes in amino acid. Haplogroups are identified.
Fig. 2 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence
Fig. 2. External morphology of Prosthenorchis elegans via scanning electron microscopy (SEM). A. View of entire body of parasite. B. Proboscis armed with hooks.
Fig. 48 Partial Cytochrome Oxidase I sequences for 14 in Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals
Fig. 48 Partial Cytochrome Oxidase I sequences for 14 species of Leptoconchus; for each species, the respective combination of underlined nucleotides is considered diagnostic
Figure 1 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes
Figure 1. PCR images of eight Grapsoidea species. "1" is S. sinensis; "2" is C. sinensis; "3" is P. bidens; "4" is H. latimera; "5" is H. tientsinensis; "6" is H. wuana; "7" is H. sanguineus; "8" is V. litterata.
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I in Phylogenetic relationship among slender loris species (Primates, Lorisidae: Loris) in Sri Lanka based on mtDNA CO1 barcoding
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I (CO1) sequences from 7 different slender loris (Loris) taxas, rooted using slow loris (Nycticebus) sequences deposited in the GenBank.
Figure. Phylogram showing phylogenetic relationships estimated using maximum likelihood analysis of 16S rRNA and COXI gene revealed the grouping of Orthochirus iranus, O. farzanpay, O. stockwelli, O. zagrosensis, O. innesi (JQ514244.1 Morocco), and O. bicolor (KT716038.1 India), with the outgroup species Androctonus crassicauda (FJ217732). in A study of genetic diversity among different population of Orthochirus sp. based on cytochrome C oxidase subunit I and 16srRNA sequencing
Figure. Phylogram showing phylogenetic relationships estimated using maximum likelihood analysis of 16S rRNA and COXI gene revealed the grouping of Orthochirus iranus, O. farzanpay, O. stockwelli, O. zagrosensis, O. innesi (JQ514244.1 Morocco), and O. bicolor (KT716038.1 India), with the outgroup species Androctonus crassicauda (FJ217732).
Figure 5. A minimum evolution tree using cytochrome c oxidase subunit 1 in DNA barcoding of black cherry aphid Myzus cerasi (Fabricus, 1775) (Hemiptera: Aphididae) populations collected from Prunus avium and Prunus cerasus
Figure 5. A minimum evolution tree using cytochrome c oxidase subunit 1 sequences from Myzus cerasi populations.
Figure 4. A maximum likelihood tree using cytochrome c oxidase subunit 1 in DNA barcoding of black cherry aphid Myzus cerasi (Fabricus, 1775) (Hemiptera: Aphididae) populations collected from Prunus avium and Prunus cerasus
Figure 4. A maximum likelihood tree using cytochrome c oxidase subunit 1 sequences from Myzus cerasi populations.
Figure 1 in Evolutionary analyses of phylum Chaetognatha based on mitochondrial cytochrome oxidase I gene
Figure 1. The Bayesian tree based on the analysis of COI gene sequences. The confidence values are presented on the nodes.
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