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256 results for “DIA”
Dia-Pol: A large scale BlackLivesMatter and MeToo Twitter dataset
<p>This dataset (tweets_id_list.json) contains 258609 number of tweets sent in English extracted from Twitter API using the query word “#blacklivesmatter.” The dataset spans the period from 2020-01-01 to 2021-12-31 and was retrieved on 2022-06-10.</p>
MRI raw data for: A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry
<p>MRI raw data from three different magnetic field strength (1.5 T, 3 T, 7T; 7T data are in separate datasets) for the publication 'A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry', in which a phantom was presented that allows for an experimental evaluation of QSM reconstruction algorithms. The phantom contains susceptibility producing particles with dia- and paramagnetic properties embedded in an MRI visible medium (gelatin and agarose gel) and is suitable to assess the performance of algorithms that attempt to separate isotropic dia- and paramagnetic susceptibility at the sub-voxel level. The dataset additionally contains raw data for a phantom that only contains diamagnetic and paramagnetic particles, respectively, for magnetic field strengths of 1.5 T and 3 T (additional 7 T data are provided in separate datasets).</p>
Belchior Dias (d1507)
<b>-- <a href="https://doi.org/10.5281/zenodo.11582199">Documentation</a> --</b><br><br><u>Name</u>: Belchior Dias<br><u>musiXplora-ID</u>: d1507<br><u>musiXplora-URI</u>: <a href="https://musixplora.de/mxp/d1507">https://musixplora.de/mxp/d1507</a><br><u>Gender</u>: m<br><u>First Mentioned</u>: 1581<br><u>Sectors</u>: Zupfinstrumentenbau<br><u>Professions (Musical)</u>: Gitarrenbauer<br><u>Other Places of Activity</u>: Lissabon<br><br><br><u>Portfolio:</u><br><table><tbody><tr><th>Group</th><th>Role</th><th>Name</th><th>mXp-ID</th></tr><tr><td>Sortimente</td><td>Sortiment</td><td>Gitarre</td><td><a href="https://musixplora.de/mxp/2001473">2001473</a></td></tr></tbody></table><br><br><u>Changelog</u>:<br> - v0.0.1: Initial Upload.<br>
Receptes de TV3 fins el dia 7/11/2024
<h1>Receptes de cuina de la cadena tv3</h1> <p>El joc de dades és un conjunt de receptes de cuina extretes de la pàgina de TV3. Consta de gran part de les preparacions culinaries dutes a terme a la cadena catalana, hem prioritzat la classificació de les diferents dades per fer una cerca ràpida de receptes i, per aquest motiu, tenim camps de dificultat, temps, ingredients i tags entre d’altres camps. L’ús ideal seria complimentar aquestes dades amb la pàgina web del cuines: <a href="https://www.3cat.cat/tv3/cuines/receptes/">https://www.3cat.cat/tv3/cuines/receptes/</a>.</p> <p>Recepta:</p> <ul> <li> <p><strong>Nom</strong>: és un cadena de caracters que descriu el nom de la recepta.</p> </li> <li> <p><strong>Link</strong>: és una cadena de caracters que descriu la url de la recepta.</p> </li> <ul> <li> <p>Pagina: és un enter que ens diu en quina pàgina del 3cat es troba la recepta.</p> </li> </ul> <li> <p><strong>Imatge</strong>: és una cadena de caràcters que descriu la url de la imatge corresponent a la recepta.</p> </li> <li> <p><strong>Dificultat</strong>: és una cadena de caracters que ens mostra la dificultat de la recepta en tres possibles valors: “Baixa”, “Mitjana”, “Alta”.</p> </li> <li> <p><strong>Temps</strong>. és una cadena de caràcters que ens descriu el temps que es necessita per a cuinar la recepta. es tracta d’una frase de l’estil: “menys d’una hora” o “menys de 30 minuts”. De vegades te numeros i de vegades no. si volem convertir-ho en un valor numèric necessitarem realitzar-hi transformacions.</p> </li> <li> <p><strong>Dieta</strong>: és una cadena de caràcters que ens descriu si la recepta forma part d’algun tipus de dieta específica amb valors diferents com són: “Vegana”, “Vegetariana”, “Sense gluten”, “Sense lactosa”, “Per a hipertensos”, “Per a esportistes”, “Per a embarassades”.</p> </li> <li> <p><strong>Ingredients</strong>: és una llista de cadenes de caràcters on cada element de la llista és un ingredient i la seva corresponent quantitat escrit en una frase planera. </p> </li> <li> <p><strong>Preparacio</strong>: és una llista de cadenes de caràcters on cada element de la llista és un pas en la preparació de la recepta. </p> </li> <li> <p><strong>Tags</strong>: és una llista de cadenes de caràcters on cada element de la llista és un ingredient rellevant en la recepta</p> </li> </ul> <p><strong> </strong></p> <p>Aquí tenim un exemple d’un element del dataset:</p> <table> <tbody> <tr> <td> <p>Nom</p> </td> <td> <p>Link</p> </td> <td> <p>Pagina</p> </td> <td> <p>Imatge</p> </td> <td> <p>Dificultat</p> </td> <td> <p>Temps</p> </td> <td> <p>Dieta</p> </td> <td> <p>Ingredients</p> </td> <td> <p>Preparacio</p> </td> <td> <p>Tags</p> </td> </tr> <tr> <td> <p>Crema de moniato i carbassa</p> </td> <td> <p><a href="https://www.3cat.cat/tv3/cuines/recepta/crema-de-moniato-i-carbassa/44696/">https://www.3cat.cat/tv3/cuines/recepta/crema-de-moniato-i-carbassa/44696/</a></p> </td> <td> <p>1</p> </td> <td> <p><a href="https://img.3cat.cat/multimedia/jpg/3/9/1728461282093_326.jpg">https://img.3cat.cat/multimedia/jpg/3/9/1728461282093_326.jpg</a></p> </td> <td> <p>Baixa</p> </td> <td> <p>Més d'una hora</p> </td> <td> </td> <td> <p>['Mitja carbassa cacauet (800 g)1 moniato90 g pernil ibèric750 ml brou de verduresSidraFarigola frescaRomaní frescCúrcumaGingebreMentaJulivertOli OVEPebre negreSal',...', 'Oli OVE', 'Pebre negre', 'Sal']</p> </td> <td> <p>['1. Rentem el moniato i la carbassa.\xa0\xa0', '2. Tallem la carbassa per la meitat.\xa0', ..., '14.\xa0Piquem la menta i el julivert.\xa0', "15. Finalment, servim la crema en un plat, hi posem el pernil cruixent, la menta, el julivert i un raig d'oli.\xa0"]</p> </td> <td> <p>['Porc', 'Farigola', 'Carbassa', 'Pebre negre', 'Cúrcuma', 'Gingebre', 'Romaní']</p> </td> </tr> </tbody> </table> <p> </p>
7T MRI raw data for: A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry
<p>MRI 7 T raw data for the publication 'A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry', in which a phantom was presented that allows for an experimental evaluation of QSM reconstruction algorithms. The phantom contains susceptibility producing particles with dia- and paramagnetic properties embedded in an MRI visible medium (gelatin and agarose gel) and is suitable to assess the performance of algorithms that attempt to separate isotropic dia- and paramagnetic susceptibility at the sub-voxel level. This dataset only contains additional raw data for a phantom that only contains diamagnetic and paramagnetic particles, respectively.</p>
Training dataset: DIA data analysis of a HEK/Ecoli Spike-in dataset using OpenSwathWorkflow
<p>The eight raw files serve as a concise but meaningful training data set in the Galaxy training network (https://galaxyproject.github.io/training-material/).</p> <p>HEK and E.coli cell pellets were lysed with 5 % SDS, 50 mM triethylammonium bicarbonate (TEAB), pH 7.55. The obtained protein extracts were reduced by adding f.c. 5 mM TCEP and alkylated by the addition of f.c. 10 mM iodacetamide. Protein digestion and purification was performed on S-Trap columns. To ensure protein binding to the S-Trap columns, samples were acidified to a final concentration of 1.2 % phosphoric acid (~ pH 2). Six times the sample volume S-Trap buffer (90% aqueous methanol containing a final concentration of 100 mM TEAB, pH 7.1) was added to the samples which were then loaded on the columns and washed with S-Trap buffer. Protein digestion was performed with trypsin and LysC for one hour at 47 °C. Peptides were eluted in three steps with (1) 50 mM TEAB, (2) 0.2 % aqueous formic acid and (3) 50 % acetonitrile containing 0.2 % formic acid. Eluted peptides of HEK and E.coli were mixed in two different ratios and four replicates of each Spike/in ratio were measured:</p> <p>Sample HEK E.coli MS method<br> Sample1 2.5 0.15 DIA<br> Sample2 2.5 0.15 DIA<br> Sample3 2.5 0.15 DIA<br> Sample4 2.5 0.15 DIA<br> Sample5 2.5 0.80 DIA<br> Sample6 2.5 0.80 DIA<br> Sample7 2.5 0.80 DIA<br> Sample8 2.5 0.80 DIA</p> <p>Additionally, iRT peptides were added and 1µg of each samples was measured using data independent acquisition with a Q-Exactive Plus mass spectrometer. Briefly, a scan range from 400-1000 m/Z was first covered by an MS1 scan followed by 25 consecutive MS2 scans (each 24 m/z broad). In the next cycle another MS1 scan was acquired followd by 26 MS2 scans (also 24m/z broad) in which the window centers were shifted by 50% compared to the previous cycle of MS2 scans. The resulting raw files contain overlapping MS2 scans.</p> <p>Besides the eight raw files, we uploaded a spectral library, a transition list for the iRT peptides as well as an sample annotation file.<br> Additionally, we uploaded the Galaxy PyProphet score training result files: PyProphet score report and PyProphet score.</p>
Training dataset: Statistical analysis of a HEK/Ecoli Spike-in DIA dataset using MSstats
<p>The uploaded files serve as a concise but meaningful training data set in the Galaxy training network (https://galaxyproject.github.io/training-material/).</p> <p>HEK and E.coli cell pellets were lysed with 5 % SDS, 50 mM triethylammonium bicarbonate (TEAB), pH 7.55. The obtained protein extracts were reduced by adding f.c. 5 mM TCEP and alkylated by the addition of f.c. 10 mM iodacetamide. Protein digestion and purification was performed on S-Trap columns. To ensure protein binding to the S-Trap columns, samples were acidified to a final concentration of 1.2 % phosphoric acid (~ pH 2). Six times the sample volume S-Trap buffer (90% aqueous methanol containing a final concentration of 100 mM TEAB, pH 7.1) was added to the samples which were then loaded on the columns and washed with S-Trap buffer. Protein digestion was performed with trypsin and LysC for one hour at 47 °C. Peptides were eluted in three steps with (1) 50 mM TEAB, (2) 0.2 % aqueous formic acid and (3) 50 % acetonitrile containing 0.2 % formic acid. Eluted peptides of HEK and E.coli were mixed in two different ratios and four replicates of each Spike/in ratio were measured and analysed using OpenSwathWorkflow in Galaxy. Results were exported using PyProphet and can be used for the statistical analysis and detection of the two different Spike-in Ratios. The Spike-in ratios were the following:</p> <p>Sample HEK E.coli <br> Spike_in_1 2.5 0.15<br> Spike_in_2 2.5 0.80 </p> <p>Besides the two PyProphet export files, we uploaded a sample annotation file as well as a comparison matrix file.<br> Additionally, we uploaded the Galaxy MSstats training result files: MSstats_ComparisonResult_export_tabular and MSstats_ComparisonResult_msstats_input.</p>
Fig. 4. SEM micrographs. — A–D. M in New species of Macunahyphes Dias, Salles & Molineri (Ephemeroptera: Leptohyphidae), with taxonomic notes
Fig. 4. SEM micrographs. — A–D. M. araca sp. nov. A. Male genitalia (ventral view). B. Male genitalia (lateral view). C. Egg (general aspect). D. Egg showing the micropylar area. — E. M. eduardoi Almeida & Mariano, 2015, egg (general aspect).
Fig. 3 in New species of Macunahyphes Dias, Salles & Molineri (Ephemeroptera: Leptohyphidae), with taxonomic notes
Fig. 3. Male genitalia (ventral view). A. Macunahyphes araca sp. nov. B. Macunahyphes zagaia sp. nov. Scale bars: 100 µm.
Fig. 2. Macunahyphes spp., dorsal view. A. M in New species of Macunahyphes Dias, Salles & Molineri (Ephemeroptera: Leptohyphidae), with taxonomic notes
Fig. 2. Macunahyphes spp., dorsal view. A. M. zagaia sp. nov. (♁). B. M. eduardoi Almeida & Mariano, 2015 (♀). C. M. australis (Banks, 1913) (♁). D. M. araca sp. nov. (♁). Scale bars: 0.5 mm.
Fig. 1 in New species of Macunahyphes Dias, Salles & Molineri (Ephemeroptera: Leptohyphidae), with taxonomic notes
Fig. 1. Geographical distribution of species of Macunahyphes in South America and Brazil (per state).
Yeast proteomics microflow 23 min gradient DIA-MS
<p><em>Saccharomyces cerevisiae</em> (BY4743 rendered prototrophic with a plasmid encoding for HIS3, LEU2 and URA3 <a href="https://paperpile.com/c/AXHME6/nwrF">[25]</a>) were grown to exponential phase in minimal synthetic nutrient media. Proteins were extracted by bead beating for 5min at 1500rpm in 8M urea/0.1M ammonium bicarbonate. Proteins were reduced with 5mM dithiothreitol, alkylated with 10mM iodoacetamide. The sample was diluted to 1.5M urea/0.1M ammonium bicarbonate before the proteins were digested overnight with Trypsin (1:30 Trypsin to total protein ratio). Peptides were cleaned-up with 96-well MacroSpin plates (Nest Group) and iRT peptides (Biognosys AG) were spiked in.</p> <p>The digested peptides were analysed on a nanoAcquity (Waters) coupled to a TripleTOF 6600 (Sciex). Peptides were separated with a 23 minute non-linear gradient (4% Acetonitrile/0.1 % formic acid to 36% Acetonitrile/0.1% formic acid) on a Waters HSS T3 column (150mm x 300μm, 1.8μm Particles) with a 5μl/min flow rate. The DIA method consisted of an MS1 scan from m/z 400 to m/z 1250 (50ms accumulation time) and 40 MS2 scans (35ms accumulation time) with variable precursor isolation width covering the mass range from m/z 400 to m/z 1250.</p>
Figure 2 in Harvestmen (Arachnida: Opiliones) from the Atlantic Forest of the Fernão Dias Environmental Protection Area, southern Minas Gerais, Brazil
Figure 2. Harvestmen records at the Fernão Dias EPA, Gonçalves municipality, southern Minas Gerais state: A) Ampheres luteus (Giltay, 1928). B) Megapachylus anomalus (Mello-Leitão, 1922). C) Gonyleptes pseudogranulatus (Soares, 1946). D) Munequita sp. / Registros de opiliones de la APA Fernão Dias, municipio de Gonçalves, sur del estado de Minas Gerais: A) Ampheres luteus (Giltay, 1928). B) Megapachylus anomalus (Mello-Leitão, 1922). C) Gonyleptes pseudogranulatus (Soares, 1946). D) Munequita sp.
Figure 1 in Harvestmen (Arachnida: Opiliones) from the Atlantic Forest of the Fernão Dias Environmental Protection Area, southern Minas Gerais, Brazil
Figure 1. Sampling areas for harvestmen (Arachnida) in the Atlantic Forest of the Fernão Dias EPA in the municipality of Gonçalves, southern Minas Gerais state, in mixed and seasonal semideciduous forests. / Áreas de muestreo para opiliones (Arachnida) en la Mata Atlántica de la APA Fernão Dias en el municipio de Gonçalves, sur del estado de Minas Gerais, en bosques semideciduos mixtos y estacionales.
Fig. 1 in Molecular screening of ticks of the genus Amblyomma (Acari: Ixodidae) infesting South African reptiles with comments on their potential to act as vectors for Hepatozoon fitzsimonsi (Dias, 1953) (Adeleorina: Hepatozoidae)
Fig. 1. Maximum likelihood analysis of Amblyomma tick species based on the 16S rRNA sequences. Bootstrap values at the major nodes are of percentage agreement among 1000 replicates. The branch scale represents substitutions per site.
Fig. 2 in Molecular screening of ticks of the genus Amblyomma (Acari: Ixodidae) infesting South African reptiles with comments on their potential to act as vectors for Hepatozoon fitzsimonsi (Dias, 1953) (Adeleorina: Hepatozoidae)
Fig. 2. Maximum likelihood analysis of species of Hepatozoon based on the 18S rRNA sequences. Bootstrap values at the major nodes are of percentage agreement among 1000 replicates. The branch scale represents substitutions per site.
Linked collectors and determiners for: New species of Macunahyphes Dias, Salles & Molineri (Ephemeroptera: Leptohyphidae), with taxonomic notes.
Natural history specimen data linked to collectors and determiners held within, "New species of Macunahyphes Dias, Salles & Molineri (Ephemeroptera: Leptohyphidae), with taxonomic notes". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/37f603bf-5d64-4131-9907-b633066b243b">https://bionomia.net/dataset/37f603bf-5d64-4131-9907-b633066b243b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/37f603bf-5d64-4131-9907-b633066b243b">https://gbif.org/dataset/37f603bf-5d64-4131-9907-b633066b243b</a>. Formatted as a Frictionless Data package.
7 T MRI rawdata for (part 1): A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry
<p>MRI raw data from three different magnetic field strength (1.5 T, 3 T, 7T; 7T data are in separate datasets) for the publication 'A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry', in which a phantom was presented that allows for an experimental evaluation of QSM reconstruction algorithms. The phantom contains susceptibility producing particles with dia- and paramagnetic properties embedded in an MRI visible medium (gelatin and agarose gel) and is suitable to assess the performance of algorithms that attempt to separate isotropic dia- and paramagnetic susceptibility at the sub-voxel level. This dataset additionally contains raw data for a phantom that only contains diamagnetic and paramagnetic particles, respectively, for magnetic field strengths of 7 T.</p>
7 T MRI rawdata for (part 2): A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry
<p>MRI raw data from three different magnetic field strength (1.5 T, 3 T, 7T; 7T data are in separate datasets) for the publication 'A novel phantom with dia- and paramagnetic substructure for quantitative susceptibility mapping and relaxometry', in which a phantom was presented that allows for an experimental evaluation of QSM reconstruction algorithms. The phantom contains susceptibility producing particles with dia- and paramagnetic properties embedded in an MRI visible medium (gelatin and agarose gel) and is suitable to assess the performance of algorithms that attempt to separate isotropic dia- and paramagnetic susceptibility at the sub-voxel level. This dataset additionally contains raw data for a phantom that only contains diamagnetic and paramagnetic particles, respectively, for magnetic field strengths of 7 T.</p>
Relógio de Moure e Santos para troca da temperatura de luz branca de acordo com a hora do dia
<p>Representação gráfica do protocolo para troca de temperatura de cor de luz branca de acordo com a hora do dia, em função da posição do sol durante o dia.<br> <br> Graphical representation of the protocol for changing the color temperature of white light according to the time of day, as a function of the position of the sun during the day.</p>
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