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ShareScore release 0.9.0
Dataset results
310 results for “DMSO”
RNASeq data of isolated murine glomeruli treated with Vitamin D3 and DMSO
<p>RNASeq data of isolated murine glomeruli (as described here <a href="https://dx.doi.org/10.1111%2Fbph.13667">10.1111/bph.13667</a>) treated with Vitamin D3 (100 nM) and DMSO (0.1%) for 6 days. </p>
Raw data from Cao et al. (2023) "Electron exchange capacity of pyrogenic dissolved organic matter (DOM): Complementarity of square-wave voltammetry in DMSO and mediated chronoamperometry in water"
<p>Measured and fitted data from square-wave voltammetry (SWV) in DMSO for electron exchange capacities (EECs) of pyrogenic natural organic matter (pyDOM) and natural organic matter (NOM) standards. </p> <p>From Cao, H., A. S. Pavitt, J. M. Hudson, P. G. Tratnyek, and W. Xu. 2023. Electron exchange capacity of pyrogenic dissolved organic matter (DOM): Complementarity of square-wave voltammetry in DMSO and mediated chronoamperometry in water. Environ. Sci. Proc. Impacts: ASAP. [10.1039/d3em00009e]</p> <p>The manuscript reports electron accepting capacity (EAC), electron donating capacity (EDC), and electron exchange capacities (EECs) measured with a new method involving square-wave voltammetry in an aprotic solvent (dimethyl sulfoxide, DMSO). The measurement method, fitting of peak areas, and conversion of peak areas to EECs are described in the main text and supporting information of the manuscript.</p> <p>Here we provide the original measured data, baseline corrected data used in the peak fitting, and fitted peak area data that were used to obtain the final EEC values. The data are provided in one .xlsx file that contains multiple tabs: (i) a table of contents, (ii) a summary of the final fitting results, and (iii) tabs numbered R1-R40 containing raw measured data for each pyDOM/NOM sample.</p> <p>The data provided here should be sufficient to replicate and verify all of the analysis described in the manuscript. If you use these data, please cite this Zenodo record (DOI 10.5281/zenodo.7747020) and the original manuscript (DOI: 10.1039/d3em00009e).</p>
Raw Data to "Theoretical Study on the Photoacidity of Hydroxypyrene Derivatives in DMSO Using ADC(2) and CC2"
<p>This data is a supplement to the publication entitled "Theoretical Study on the Photoacidity of Hydroxypyrene Derivatives in DMSO Using ADC(2) and CC2" in the The Journal of Physical Chemistry A (DOI: 10.1021/acs.jpca.2c04436). It contains the structures (as '.xyz' files) and HF/DFT energies from the quantum chemical (QC) calculations using TURBOMOLE (version 7.4).</p> <p>Additional information on the file structure is given in the README file.</p>
Supporting information for "Cosolvent effects on the structure and thermoresponse of a polymer brush: PNIPAM in DMSO-water mixtures"
<p>This deposition contains the data and analysis (Jupyter notebooks) detailed in "Cosolvent effects on the structure and thermoresponse of a PNIPAM brush”. All Jupyter notebooks have also been converted into PDF files for ease of viewing.</p> <p>All data and code (notebooks) required to reproduce the analysis can be found within the “supporting_data_analysis.zip” archive. This archive contains three sub-directories:</p> <ul> <li>FTIR <ul> <li>FTIR transmission data of binary DMSO-water mixtures as a function of solvent composition.</li> <li>FTIR deconvolution was performed using software readily available at <a href="https://github.com/haydenrob/spec_deconv">https://github.com/haydenrob/spec_deconv</a>.</li> </ul> </li> <li>Ellipsometry <ul> <li>Data directory containing all raw ellipsometry data.</li> <li>“refellips_Spectroscopic_SL.ipynb” notebooks to reproduce the analysis of a hydrated (solid-liquid) polymer brush. Relevant plotting tools can be found in the <a href="https://github.com/refnx/refellips">refellips</a> repo.</li> <li>A spatial map of the polymer brush used for spectroscopic ellipsometry data analysis: “surface_map.png”.</li> <li>“Ellipsometry_logistical_fitting.ipynb” notebook and “DMSO_6mol_results.csv” file for the demonstration of the extraction of a thermotransition temperature from an ellipsometry dataset.</li> </ul> </li> <li>Neutron_reflectometry <ul> <li>Data directory containing all relevant reduced reflectivity profiles from the Platypus reflectometry at ANSTO.</li> <li>“refnx_dry.ipynb” and “refnx_solvent.ipynb” notebooks required to reproduce the analysis pertaining to a dry polymer brush and a solvated brush, respectively.</li> <li>Additional code required to model the hydrated polymer brush and various plotting tools can be in the <a href="https://github.com/igresh/refnxtoolbox">refnxtoolbox</a> repo.</li> </ul> </li> </ul>
Raw Data to "Computational Investigation of Explicit Solvent Effects and Specific Interactions of Hydroxypyrene Photoacids in Acetone, DMSO, and Water"
<p>This data is a supplement to the publication entitled "Computational Investigation of Explicit Solvent Effects and Specific Interactions of Hydroxypyrene Photoacids in Acetone, DMSO, and Water" in <em>Physical Chemistry Chemical Physics</em> (DOI: 10.1039/D3CP00800B). It contains the structures (as '.xyz' files) and HF/DFT energies from the quantum chemical (QC) calculations using TURBOMOLE (version 7.6).</p> <p>Additional information on the file structure is given in the README file.</p>
The process of HDAC11 Assay Development: Effect of DMSO
<p>For the purpose of compound library screenings, the compounds would be made available in DMSO and thus, when they would be incubated with the protein, the protein solution will now contain DMSO as well. It is important to determine the concentration of DMSO that could be tolerated by the protein such that the protein stays active. Hence, the effect of varying concentration of DMSO was analyzed on HDAC11 activity.</p>
Quantum chemical investigation of the predominant conformation of the antibiotic azithromycin in water and DMSO solutions: an integrated thermodynamic and NMR analysis
<p><span>Azithromycin (AZM) is a macrolide-type antibiotic used to prevent and treat serious infection</span><span>s (mycobacteria or MAC) that significantly inhibit bacterial growth. Knowledge of the predominant conformation in solution is of fundamental importance for advancing our understanding of the intermolecular interactions of AZM with biological targets. We report an extensive density functional theory (DFT) study of plausible AZM structures in solution considering implicit and explicit solvent effects. The best match between the experimental and theoretical nuclear magnetic resonance (NMR) profiles was used to assign the preferred conformer in solution, which was supported by the thermodynamic analysis. Among the 15 distinct AZM structures, conformer M14, having a short intramolecular C6-OH…N H-bond, is predicted to be dominant in water and DMSO solutions. The results indicated that the X-ray structure backbone is mostly conserved in solution, showing that large flexible molecules with several possible conformations may assume a preferential spatial orientation in solution, which is the molecular structure that ultimately interacts with biological targets.</span></p>
Quantum chemical investigation of the predominant conformation of the antibiotic azithromycin in water and DMSO solutions: an integrated thermodynamic and NMR analysis
Open the record for dataset details and reuse information.
DMSO-TMP-ACN-H2O Co-solvent Bayesian Optimization with Reproducibility and Gas Analysis via OEMS Data
<p>The zipped files contain the data collected and used for the Bayesian optimization (BO) of Coulombic efficiency (and discharge capacity) from the exploration of 4 co-solvents (dimethyl sulfoxide, trimethyl phosphate, acetonitrile, and water) and 2 salts (lithium perchlorate and LiTFSI).</p> <p>The cycling data and the BO clients are contained in BayesianOptimization.zip.</p> <p>The gas analysis data via online electrochemical mass spectrometry (OEMS) are contained in OEMS_data.zip.</p> <p>The cycling data of select repeats from the BO are contained in Reproducibility_data.zip.</p> <p>These are the raw datafiles. Preprocessing and analysis is not included.</p>
Prospective Trial Comparing Intravesical Chondroitin Sulphate 2% and DMSO in the Treatment of PBS/Interstitial Cystitis
ClinicalTrials.gov study NCT04268810. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Impact of DMSO Concentrations on Hematopoietic Recovery After Autologous HSC Transplantation.
ClinicalTrials.gov study NCT02452099. IPD Sharing: Not stated. Countries: 1. Publications: 3.
DMSO-PDT of BCC - A 6 Year Follow up
ClinicalTrials.gov study NCT00218829. IPD Sharing: NO. Countries: 0. Publications: 1.
Comparison of the Treatment of Refractory Bladder Pain Syndrome With DMSO and DMSO With Botulinum Toxin A
ClinicalTrials.gov study NCT03103594. IPD Sharing: NO. Countries: 0. Publications: 6.
Nucleosome position mapping by micrococcal nuclease analysis of S. cerevisiae anchor-away Sth1, Swi2 and/of TBP cells in raffinose and galactose-rich media in rapamycin or DMSO
GEO Series GSE190737. Saccharomyces cerevisiae. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A. thaliana XVE_mTCP3 ER 16hr vs. XVE_mTCP3 DMSO 16hr
GEO Series GSE271710. Arabidopsis thaliana. 3 samples. Type: Expression profiling by array.
Single cell changes in DBZ or DMSO treated cells derived from Apc-mutant organoid cultures
GEO Series GSE118055. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profiling in melanoma cell lines treated with THZ531 or DMSO
GEO Series GSE184734. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Comparative gene expression profiling of RNA-seq data from islets of β-cell-specific ZZEF1 knockout mice (βZKO-Mip) and their littermate controls, treated with either azoramide or DMSO.
GEO Series GSE288210. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Human TNBC Cells 72h Treatment with 4.5nM OTSSP167 MELK Inhibitor vs. DMSO Control
GEO Series GSE68691. Homo sapiens. 2 samples. Type: Expression profiling by array.
RNA-seq on CAR-T cells and CAR-T cells exposed to Nalm6 stimulation followed by treatment with DMSO, BAPTA and BTP-2
GEO Series GSE178998. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.