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162 results for “DNA-barcoding”
Mosquito Tagging Using DNA-Barcoded Nanoporous Protein Microcrystals
<p>Contains raw data for the publication titled 'Mosquito Tagging Using DNA Barcoded Nanoporous Protein Microcrystals'.</p>
Figure 1 in First DNA-barcode for the genus Aegyptobia (Trombidiformes: Tenuipalpidae) and molecular barcodes of spider mites (Trombidiformes: Tetranychidae) from Iran
Figure 1. Neighbor-Joining tree of the COI sequences using Tamura-Nei model. Scale bar represents number of nucleotide substitutions per site. Bootstrap was 1000 replicates. Numbers on nodes represent bootstrap values.
Fig. 14 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 14 Phorcus turbinatus (Born, 1778). a PCA plot of PC1 vs. PC2 for genus Phorcus. Phorcus turbinatus (petrol) separates from all other species. b Representative specimen of Ph. turbinatus from this study. c One syntype of Ph. turbinatus (NHMW 14002). Scale bars 5 mm
Fig. 12 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 12 Phorcus richardi (Payraudeau 1826). a PCA plot of PC1 vs. PC2 of genus Phorcus. Phorcus richardi (maroon) is the most abundant species in the current sample. It separates well from Ph. articulatus and Ph. turbinatus. One group of Ph. mutabilis is not distinguishable from Ph.
Fig. 11 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 11 Steromphala divaricata (Linnaeus, 1758). a PCA plot of PC1 vs. PC2 from genus Steromphala. Steromphala divaricata (pink) cannot be recovered as a completely separated group as it shows a small overlap with St. varia. Type material and material from this study do not overlap. Three individuals (Linné 41–43) of the type material (pink group on the
Fig. 10 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 10 Steromphala varia (Linnaeus, 1758). a PCA plot of PC1 vs. PC3 of genus Steromphala. Steromphala varia (blue) separates from all other species. Specimens from this study overlap with the type material. b
Fig. 4 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 4 Plot of first and third principal component of combined lateral and ventral landmark data from Phorcus and Steromphala individuals. A morphological separation of the two genera becomes apparent
Fig. 5 in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 5 Lectotype of Steromphala cineraria (Linnaeus, 1758). Located at LSL (LSL.502). Scale bar 5 mm
Fig. 2 Landmark templates for representative a lateral and b in Revision of the genus complex Gibbula: an integrative approach to delineating the Eastern Mediterranean genera Gibbula Risso, 1826, Steromphala Gray, 1847, and Phorcus Risso, 1826 using DNA-barcoding and geometric morphometrics (Vetigastropoda, Trochoidea)
Fig. 2 Landmark templates for representative a lateral and b ventral standardised views. Filled circles show fixed landmarks. Empty circles show semilandmarks, processed as sliding landmarks
Suppl. figures of otoliths of pelagic shorefish larvae captured over the Galapagos Rift for Victor, B.C. (2023) Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift
<p>Supplementary figures of otoliths of pelagic shorefish larvae captured over the Galapagos Rift</p> <p>Victor, B.C. (2023)</p> <p><strong>Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift</strong></p> <p>in volume: Early Life History and Biology of Marine Fishes: Research inspired by the work of H Geoffrey Moser</p> <p>Figure Sup A1 Sagittal otolith of 5.9 mm SL Stegastes sp. fish larva (Pomacentridae) captured over the Galapagos Rift, age since hatching is 23 days.</p>
Suppl. figures of pelagic shorefish larvae captured over the Galapagos Rift for Victor, B.C. (2023) Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift
<p>Supplementary figures of pelagic shorefish larvae captured over the Galapagos Rift</p> <p>Victor, B.C. (2023)</p> <p><strong>Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift</strong></p> <p>in volume: Early Life History and Biology of Marine Fishes: Research inspired by the work of H Geoffrey Moser</p> <p>Figure S1 Gobioid fish larvae captured over the Galapagos Rift.</p> <p>Figure S2 Labrid fish larvae captured over the Galapagos Rift.</p> <p>Figure S2. Pomacentrid fish larvae captured over the Galapagos Rift.</p> <p>Figure S4 Lythrypnus sp 5.4 mm SL fish larva captured over the Galapagos Rift.</p> <p>Figure S4a Lythrypnus sp 5.4 mm SL fish larva (head) captured over the Galapagos Rift.</p> <p>Figure S5 Abudefduf troschelii 7.3 mm SL fish larva captured over the Galapagos Rift.</p> <p>Figure S6 Chaetodon humeralis 8.9 mm SL fish larva captured over the Galapagos Rift.</p> <p>Figure S7 Gerreidae 10.6 mm SL fish larva captured over the Galapagos Rift.</p> <p>Figure S8 Neoniphon suborbitalis 6.8 mm SL fish larva captured over the Galapagos Rift.</p> <p>Figure S9 Ophioblennius steindachneri 10.6 mm SL fish larva captured over the Galapagos Rift.</p> <p>Figure S9a Ophioblennius steindachneri 10.6 mm SL fish larva (head) captured over the Galapagos Rift.</p> <p>Figure S9b Ophioblennius steindachneri 10.6 mm SL fish larva (ventral) captured over the Galapagos Rift.</p> <p>Figure Sup10 Sphoeroides lobatus 12.0 mm SL fish larva captured over the Galapagos Rift.</p>
Figures 7–10 in Description of the immature stages, biology and DNA-barcoding of Quichuana pogonosa (Diptera: Syrphidae) collected in Bromeliaceae in Paraná, Brazil
Figures 7–10. Quichuana pogonosa: (7) pupa, dorsal view (DZUP 690906); (8) pupa, ventral view (DZUP 690906); (9) operculum (DZUP 690914); (10) puparium, dorsal view (DZUP 690914). (a sp l) anterior spiracles larval; (a pr) abdominal prolegs; (ap) anal papillae; (ce) cephalopharyngeal skeleton; (op) operculum; (sp p) pupal spiracles. Scale bars: 2 mm.
Figures 1–6 in Description of the immature stages, biology and DNA-barcoding of Quichuana pogonosa (Diptera: Syrphidae) collected in Bromeliaceae in Paraná, Brazil
Figures 1–6. Quichuana pogonosa: (1) egg; (2) habitus of third instar larva, lateral view (DZUP 690903); (3) third instar larva, ventral view (DZUP 690903); (4) cephalopharyngeal skeleton of third instar larva, lateral view; (5) third instar larva, dorsal view (DZUP 690903); (6) map of the chaetotaxy of the third instar larva in lateral view showing the position of the sensillae. (a1, a7, a8) abdominal segments a2–a6 are suppressed from the figure for clarity; (a) anus; (am) antennomaxillary organs; a pr, abdominal prolegs; (a sp l) anterior spiracles larval; (c) cibarium; (cs) chorionic surface; (d) dorsal; (dc) dorsal cornu; (db) dorsal bridge; (ep) epipharyngeal plate; (l) lateral; (lb) labial bridge, (lbr) labrum; (lg) longitudinal grooves; (lr) labial rods; (ll) lateral lip; (lp t) lappets; (m) mouthparts; (mi) mandibular lobes; (m pr) mesothoracic proleg; (ms) mesothorax; (mt) metathorax; (od) optical depression; (op) operculum; (p) prothorax; (v) ventral; (va) ventral arm; (vc) ventral cornu; (vl) ventrolateral; (vp) vertical plate; (w) primordia of pupal spiracles; (wl) line of weakness after puparia formation bounding the operculum. Scale bars: 1, 4 = 0.5 mm, 2 = 5 mm, 3, 5 = 2 mm.
Figures 15–20 in Description of the immature stages, biology and DNA-barcoding of Quichuana pogonosa (Diptera: Syrphidae) collected in Bromeliaceae in Paraná, Brazil
Figures 15–20. Quichuana pogonosa: (15) egg; (16) first instar larvae next to shells; (17–18) habitus of third instar larvae; (19) pupae aggregation; (20) puparia of Quichuana pogonosa (left) and Eristalis sp. (right).
Figures 11–14 in Description of the immature stages, biology and DNA-barcoding of Quichuana pogonosa (Diptera: Syrphidae) collected in Bromeliaceae in Paraná, Brazil
Figures 11–14. Quichuana pogonosa, male (DZUP 690906): (11) habitus dorsal; (12) habitus lateral; (13) genitalia, ventral view; (14) genitalia lateral view. (aed lb) aedeagal lobe, (cerc) cercus, (epand) epandrium, (hypd) hypandrium, (phapod) phallodeme, (sur) surstylus. Scale bars: 11, 12 = 2 mm, 13, 14 = 1 mm.
Data from: Evaluating species richness using proteomic fingerprinting and DNA-barcoding – a case study on meiobenthic copepods from the Clarion Clipperton Fracture Zone
<p><span>The Clarion Clipperton Fracture Zone (CCZ) is a vast deep-sea region harboring a highly diverse benthic fauna, which will be affected by potential future deep-sea mining of metal-rich polymetallic nodules. Despite the need for conservation plans and monitoring strategies in this context, the majority of taxonomic groups remains scientifically undescribed. However, molecular rapid assessment methods such as DNA-barcoding and Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) provide the potential to accelerate specimen identification and biodiversity assessment significantly in the deep-sea areas. In this study, we successfully applied both methods to investigate the diversity of meiobenthic copepods in the eastern CCZ, including the first application of MALDI-TOF MS for the identification of these deep-sea organisms. Comparing several different species delimitation tools for both datasets, we found that biodiversity values were very similar, with Pielou's Evenness varying between 0.97 and 0.99 in all datasets. Still, direct comparisons of species clusters revealed differences between all techniques and methods, which are likely caused by the high number of rare species being represented by only one specimen, despite our extensive dataset of more than 2000 specimens. Hence, we regard our study as a first approach toward setting up a reference library for mass spectrometry data of the CCZ in combination with DNA-barcodes. We conclude that proteome fingerprinting, as well as the more established DNA-barcoding, can be seen as a valuable tool for rapid biodiversity assessments in the future, even when no reference information is available.</span></p>
Field sampling and DNA-barcoding of fig pollinator wasps across host species and host developmental phase and on non-Ficus controls
<p><span>To better understand factors that might contribute to this observed range of specificity, we used sticky traps to capture fig-pollinating wasp individuals at 13 <em>Ficus</em> species, sampling at different stages of the reproductive cycle of the host figs (e.g. trees with receptive inflorescences, or vegetative trees, bearing only leaves). We also sampled at other tree species, using them as non-<em>Ficus</em> controls. DNA barcoding allowed us to identify the wasps to species, and therefore assign their presence and abundance to host fig species and the developmental stage of that individual tree. Here we upload the data and the R scripts used to analyze these data.</span></p>
Field sampling and DNA-barcoding of fig pollinator wasps across host species and host developmental phase and on non-Ficus controls
Open the record for dataset details and reuse information.
Data from: Evaluating species richness using proteomic fingerprinting and DNA-barcoding – a case study on meiobenthic copepods from the Clarion Clipperton Fracture Zone
Open the record for dataset details and reuse information.
Supplementary data for Cariou et al (2020, Molecular Ecology Resources, "How consistent is RAD-seq divergence with DNA-barcode based clustering in insects?")
<p>This dataset accompanies a paper by Cariou et al, to be published in Molecular Ecology Resources, where we assessed in 92 insect species if the genetic clustering of specimens into species like units, on the basis of mitochondrial DNA, was consistent with genome wide divergence, as estimated by RAD-seq data. The present repository includes: (1) a detailed description of the bioinformatic analysis indicating which programs were used, together with parameter values, (2) the raw RAD-seq data following demultiplexing, (3) the consensus sequences of all RAD loci for all specimens, and (4) large tables indicating genetic distances at all RAD loci for all species.</p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.