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datasets available to search
ShareScore release 0.9.0
Dataset results
13 results for “Early blight”
Molecular mapping of quantitative trait loci (QTL) for resistance to early blight in tomato
<p>Molecular mapping of quantitative trait loci (QTL) for resistance to early blight in tomato (1135884)</p>
Supplementary Data for: Whole genome sequencing elucidates the species-wide diversity and evolution of fungicide resistance in the early blight pathogen Alternaria solani
<p>Supplementary Data for: Whole genome sequencing elucidates the species-wide diversity and evolution of fungicide resistance in the early blight pathogen Alternaria solani</p> <p>This repository contains:</p> <p>SNP call data / VCF file</p> <p>Scripts for all processing steps from mapping up to PCA and phylogenetic analyses (script.ts)<br> Scripts for population genomic analyses with LEA and PopGenome (scripts.SE)<br> All script names are self explanatory.</p>
Fig. 3. A in Bio-genetic analysis of resistance in tomato to early blight disease, Alternaria alternata
Fig. 3. A two-dimensional plot of the Principal Component Analysis (PCA) of ISSR data showing the clustering of 35 tomato genotypes. On PCA plot, three groups are formed and two other genotypes, namely 111 Falat American and Roma, scattered on the plot and do not fall under any of the groups. The distribution of genetic variation within, and among, groups, was detected using the molecular variance analysis (AMOVA) in GenAlEx software. Genetic variation indices, including observed number of alleles (Na) and effective numbers of alleles (Ne), Shannon's information index (I), Nei's gene diversity (H), percent of polymorphic loci (PPL), were estimated using POP-GENE software.
Fig. 1 in Bio-genetic analysis of resistance in tomato to early blight disease, Alternaria alternata
Fig. 1. Ward's clustering dendrogram of 35 tomato genotypes based on resistance to Alternaria alternata. Note: Cluster Ӏ consisted of moderately susceptible and moderately resistant genotypes, Cluster ӀӀ consisted of resistant genotypes and Cluster ӀӀӀ consisted of highly susceptible genotypes. Disease severity was assessed based on infection percent (0–100) against the scoring scales of: 0, 5, 10, 25, 50, 75, or 100%.
Fig. 2 in Bio-genetic analysis of resistance in tomato to early blight disease, Alternaria alternata
Fig. 2. Grouping of 35 tomato genotypes and lines using the UPGMA method based on complete algorithm and Jaccard's similarity coefficient of 11 ISSR molecular markers. G1 consisted of highly susceptible genotype, G2 consisted of susceptible genotype, G3 consisted of moderately susceptible genotype, G4 consisted of moderately resistant genotype and G5 consisted of resistant genotype. Pearson correlation analysis was carried out to analyze the relationship among the tomato genotypes and response variability and cluster analysis of data was performed using SPSS software.
Gene expression during early infection of the resistant winter wheat cultivar Dream with Fusarium graminearum, the major causal agent of fusarium head blight in wheat
GEO Series GSE54551. Triticum aestivum. 12 samples. Type: Expression profiling by array.
Gene expression in near isogenic spring wheat lines carrying or not the 2DL FHB resistance QTL during early infection with Fusarium graminearum, the major causal agent of fusarium head blight in wheat
GEO Series GSE54550. Triticum aestivum. 30 samples. Type: Expression profiling by array.
Gene expression during early infection of the susceptible spring wheat cultivar Roblin with Fusarium graminearum, the major causal agent of fusarium head blight in wheat
GEO Series GSE36283. Triticum aestivum. 12 samples. Type: Expression profiling by array.
Microarray Expression profiling of susceptible (CO-3) and resistant (EC-520061) genotype of tomato in response to Early Blight pathogen after 24hrs of inoculation
GEO Series GSE71428. Solanum habrochaites; Solanum lycopersicum. 12 samples. Type: Expression profiling by array.
Gene expression during early infection of the resistant spring wheat cultivar Wuhan1 with Fusarium graminearum, the major causal agent of fusarium head blight in wheat
GEO Series GSE54553. Triticum aestivum. 10 samples. Type: Expression profiling by array.
Gene expression during early infection by Fusarium graminearum in wheat lines susceptible and resistant to fusarium head blight
GEO Series GSE54556. Triticum aestivum. 113 samples. Type: Expression profiling by array.
Fig. 4 in Bio-genetic analysis of resistance in tomato to early blight disease, Alternaria alternata
Fig. 4. Three-dimensional PCA plot using ISSR data of 35 tomato genotypes. The distribution of genetic variation within, and among, groups, was detected using the molecular variance analysis in GenAlEx software. Genetic variation indices, including observed number of alleles and effective numbers of alleles, Shannon's information index, Nei's gene diversity, percent of polymorphic loci, were estimated using POP-GENE software.
Gene expression during early infection of the resistant spring wheat cultivar NuyBay with Fusarium graminearum, the major causal agent of fusarium head blight in wheat
GEO Series GSE54552. Triticum aestivum. 12 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.