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318 results for “Ecoregions”

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edi56/100

Concentration–discharge relationships of chlorophyll describe the origin and fluxes of river algae across ecoregions

Since 2017, the National Ecological Observatory Network (NEON) program provides an extensive network of automated instruments and field sampling at 34 different aquatic sites across the U.S. NEON data provides a rare opportunity to combine high-frequency measurements from sensors with physical samples collected at multiples sites from different biomes. Such combination of data is frequently available only for 1, or few, sites. NEON provides the necessary data to translate some of the methods and research previously applied to single sites to a large spatial and temporal scale. Our approach in this study was to obtain all the available and reliable data from NEON aquatic sites, and analyze high frequency measurements of Chlorophyl a (Chl a) concentration and turbidity during high flows with a common analytical procedure. Then, we relate these high flow patterns to watershed conditions and algal communities to elucidate the controls on river phytoplankton communities and fluxes. The data provided here summarizes multiple storm characteristics and C-Q metrics (hysteresis index) for Chl a and turbidity for several high flow events at 26 different NEON stream and river sites.

openCC (other)Jan 2025View details →
edi56/100

Soil and litter microclimate data from NEON and LTER Sites Across Eight U.S. Ecoregions (CliMush Project), 2022–2023

Data include soil and litter measurements for moisture, pH, and carbon-to-nitrogen ratio. Samples were collected from 8 different ecoregions, as determined by NEON, at various NEON/LTER and/or other experimental sites. Soil cores and litter samples were taken in the spring and fall of 2022.

openCC (other)Nov 2025View details →
zenodo52/100

Plant richness of the terrestrial ecoregions of the world with a mean aridity index lower than 0.65

<p>Data used to compose the <strong>Figure 1</strong> and the <strong>Table S1</strong> of the paper <strong>Biogeography of Global Drylands</strong>, by Maestre <em>et al</em>. (2021).</p>

opencc-by-4.0Nov 2020View details →
edi52/100

Daily river metabolism using oxygen flux at 75 sites in Mongolia or the United States in steppe ecoregions

We obtained GIS data to indicate local geomorphology and watershed-scale values for land use, climate, slope, and elevation for each sampling site. We selected our sites using the GIS-based program RESonate (Williams et al., 2013) to represent replicates in multiple watersheds of different geomorphic patches or Functional Process Zones (FPZs). The FPZs are reoccurring longitudinal geomorphic patches that are hypothesized to control biocomplexity, including community composition and system productivity (Thorp et al., 2006). A detailed description of the FPZ delineation methodology we employed has been provided previously (Maasri et al., 2019a; Erdenee et al., 2021). We classified each study site hierarchically by country, ecoregion, river basin, upper (streams higher in the watershed) or lower (low slope rivers of lower elevations), and relatively constrained valley or wide valley. This approach allowed us to assess reach-scale properties that could directly influence the physiological controls most often collected alongside metabolism data. This provided a framework to evaluate how we may understand the determinants of metabolism at multiple scales. We studied three large-scale temperate steppe ecoregions (Terminal Basin, TB; Montane Steppe, MS; and Grassland Steppe, GS) as characterized by Olson et al. (2001) and updated by Dinerstein et al. (2017) in two countries (Mongolia and the United States, Fig. 2). We aggregated our large-scale ecoregions for the US as follows: TB = Great Basin shrub steppe and Sierra Nevada forest, MS = South Central Rockies forest and Wyoming Basin shrub steppe, GS = Nebraska Sand Hills mixed grasslands and Northern Shortgrass prairie. We aggregated our large-scale ecoregions for Mongolia as follows: TB = Altai mountains forest and forest steppe, Gobi Lakes Valley desert steppe, Great Lakes Basin desert steppe, and Khangai Mountains alpine meadows, MS = Selenge-Orkhon forest steppe and Syan Mountains conifer forests, GS = Daurian Forest s

openCC (other)Jan 2026View details →
edi48/100

Crossing Treeline: Bacterioplankton community composition in alpine and subalpine lakes of the Rocky Mountain southern ecoregion and associated physical and chemical characteristics

This dataset includes lake water samples collected in the summer of 2016 from 16 different mountain lakes in the Rocky mountains in both Rocky Mountain National Park and the Snowy Range of southern Wyoming. Each lake was sampled twice: once in the early summer when hydrologic connections with the surrounding terrestrial environment were high and again in the late summer when hydrologic connections were low. The main goal of the study was to compare communities of bacterioplankton in alpine and subalpine lakes to determine if communities differed across treeline as soil microbes in the surrounding terrestrial environment were. To do so, we collected water samples from the deepest point of each lake, mixed it with a surface water sample and characterized bacterioplankton communities with 16S sequencing technology. Additionally, we wanted to identify abiotic factors that may correlate with community dissimilarity and characterized a suite of chemical attributes for each lake. Lake characteristics reported included surface temperature, soluble reactive phosphorous (SRP), ammonia (NH3+), pH, total dissolved nitrogen (TDN), total dissolved phosphorus (TDP), and total dissolved organic carbon (DOC), and chlorophyll a (chl-a).

openCC (other)Feb 2020View details →
zenodo44/100

Redistribution of the map with the ecoregions of Flanders (version 2002)

<p>This is a redistribution of the data source &#39;<a href="http://www.geopunt.be/catalogus/datasetfolder/5/58279e22-b9c0-4bcc-a774-95eb76208e7e">Ecodistricten en Ecoregio&#39;s</a>&#39;, originally published by the Research Institute for Nature and Forest (INBO) and distributed by &#39;Informatie Vlaanderen&#39; under a CC-BY compatible license. It is redistributed for reproducible, analytical workflows on Flemish Natura 2000 habitats and regionally important biotopes.</p> <p>A first version of the ecodistricts of the Flemish region was made by the Institute of Nature Conservation and included in the &lsquo;Flemish Structure Plan, part Open Space (1993)&rsquo; (Structuurplan Vlaanderen, deelfacet Open Ruimte). The former division in ecodistricts was partly based on the partition in &lsquo;traditional landscapes&rsquo;. Ecodistricts were defined as spatial entities, homogeneous with respect to abiotic characteristics which are slowly changing in time, as there are geology-lithology, soil, geomorphology-relief, (geo)hydrology. However, a well defined hierarchy linked to a policy level as well as to an ecological level was missing. Moreover, the internal heterogeneity in certain ecodistricts was relatively high and no unambiguous method was used to define the boundaries of the ecodistricts. For the delimitation of the new ecodistricts in Flanders in 2002 the following abiotic components were considered (in hierarchical order): climatology, geology, relief, geomorphology, geohydrology, hydrology of surface water, soil. Ecodistricts were defined on the basis of their homogeneity for most of these abiotic components. On a higher hierarchical level, ecodistricts were grouped into ecoregions, based on the similarity of their geological and geomorphological properties. The 36 ecodistricts were grouped into 12 ecoregions. The data source was produced as part of action 134 of the Flemish environmental policy plan for the period 1997-2001 and is managed by the Research Institute for Nature and Forest.</p> <p>The dataset is a shapefile of geospatial polygons that describe the ecoregions of the Flemish region, identical to the shapefile <code>hb_ecoreg_inbo</code> in the original data source.</p>

opencc-by-4.0Sep 2019View details →
zenodo44/100

Macroscopic, histological and stereological image dataset of Megrim (Lepidorhombus whiffiagonis) ovaries from the ICES Celtic Seas, south of Greater North sea or Bay of Biscay Ecoregions

<p><strong>Contents:&nbsp;</strong></p> <p>This dataset contains the macroscopic and histological images of the ovaries of 202 Megrim (female, <em>Lepidorhombus whiffiagonis</em>, Walbaum, 1792) collected from the ICES Celtic Seas, south Greater North sea or Bay of Biscay Ecoregions (Eco) in November 2019 (n=25; Eco=7h &amp; 7j), November 2020 (n=14, Eco=7h &amp; 7j), December 2020 (n=1, Eco=7h), May 2021 (n=15, Eco=7h &amp; 7g), June 2021 (n=15, Eco=7h), July 2021 (n=15, Eco=7h &amp; 7e), October 2021 (n=15, Eco=7g &amp; 7f), October 2021 (n=6, Eco=8a &amp; 8b &amp; 8c), November 2021 (n=6, Eco=8a &amp; 8b), November 2021 (n=15, Eco=7j), December 2021 (n=15, Eco=7e &amp; 7g), January 2022 (n=15, Eco=7f), February 2022 (n=15, Eco=7g), March 2022 (n=15, Eco=7g) and May 2022 (n=15, Eco=7g).</p> <p>&nbsp;</p> <p><strong>Images:</strong></p> <ul> <li><strong>Macroscopic_pictures.zip:&nbsp;</strong>archive in zip format of 549 pictures (.JPG; 2Mo-8Mo; JPG; 350pp) from 202 female megrim dissected during this study. Each photo was taken with a digital camera (no flash). For each individual, up to three pictures were taken when possible (Le Meleder <em>et al.</em>, 2022) with :&nbsp; <ul> <li>one picture of the entire fish with its abdominal cavity open with the ovaries in view</li> <li>one picture of the whole fish with the ovaries outside of the abdominal cavity</li> <li>one picture of the ovaries</li> <li>the name of the picture is the same as the fish's ID number.</li> </ul> </li> <li><strong>Histology_slides.zip :</strong> archive in zip format containing the ovarian histological slides digitized using an Aperio CS (Scan Scope Console software, v.10.2.0.2352), x20 lens. The whole slide images (.svs) are of the 461 histological slides acquired during this study.&nbsp;</li> </ul> <p>&nbsp;</p> <p><strong>Data:</strong></p> <ul> <li><strong>Readings.zip :</strong> archive in zip format containing the stereology reading results of the ovarian histological slides. In this folder, three directories are available.&nbsp; <ul> <li><strong>Calibration</strong> : Reading results of 3 different agents, with the first and last readings, as well as the QuPath scripts used.</li> <li><strong>Homogeneity</strong> : Reading results for 102 histological slides used to check the cellular homogeneity inter- and intra-gonad. These 102 slides belong to 17 fish, with three histological samples taken in the anterior (1), median (2) and posterior (3) sections of the left (G) and right (D) ovaries. A QuPath folder is also present, containing the scripts used.</li> <li><strong>Total&nbsp;</strong>: Reading results for 202 ovarian histological slides of the median position of either the left or right ovary. One median slide was read per sampled fish. A QuPath folder is also present, containing the scripts used.</li> </ul> </li> <li><strong>Macro_WHI_read_me.txt</strong> : a text file (.txt) listing the acronyms used in the <strong>Macro_WHI.xlsx</strong> file, as well as their meaning.</li> <li><strong>Macro_WHI.xlsx</strong> : Excel file (.xlsx) containing measurements of macroscopic parameters for all 202 fish sampled during this study. The information contained in this table is as follows:&nbsp; <ul> <li>Fish_id: identification of the fish. This id is identical to the name given to the pictures of the full ovaries (<strong>Macroscopic_pictures_Data</strong>)</li> <li>ICES _Division: International Council for the Exploration of the Sea (ICES) division where the fish was sampled in the Food and agricultural Organization of the United nations (FAO) fishing area 27</li> <li>ICES_statistical_rectangle : Statistical rectangle where the fish was sampled within the FAO fishing area 27</li> <li>Date: date the fish was caught (dd/mm/yyyy)</li> <li>Total_fish_length: total length of the fish (cm)</li> <li>Ungutted_fish_weight: total weight of the fish (g)</li> <li>Otolith_ID: unique identification number given to each sampled fish through the Imagine (Ellebode <em>et al.</em>, 2022) software used by IFREMER</li> <li>Parasite: presence (Y) or absence (N) of parasite in or on the fish</li> <li>age: age (in years) of the fish after analysis of the fish's otolith. The IFREMER laboratory of Boulogne-sur-Mer (FRANCE) executed this analysis</li> <li>Visual_maturity : visually estimated maturity, after observation macroscopic criteria of the fish's gonad with the naked eye, following the WKASMSF (ICES, 2018) scale</li> <li>Liver_weight: liver weight (g)</li> <li>Droite_gonad_weight : gonad weight (g) of right ovary</li> <li>Gauche_gonad_weight : gonad weight (g) of left ovary</li> <li>Sections: number of cross sections sampled for the individual</li> </ul> </li> <li><strong>Stereo_WHI_read_me.txt</strong> : a text file (.txt) listing the acronyms used in the <strong>Stereo_WHI.csv</strong> file, as well as their meaning.</li> <li><strong>Stereo_WHI.csv</strong> : a text data file (.csv) of the stereology count results of 287 slides read during this study. Among these slides, 102 were read to test the homogeneity distribution of different cell types found throughout each ovary (17 fish with 6 histological sections : a median, an anterior and a posterior histological section, for both ovaries), slides were read by multiple agents for calibration purposes (see <strong>Calibration</strong> folder for reading results of the 3 agents). Finally, 202 median histological ovarian slides were read. The information contained in this table is as follows:&nbsp; <ul> <li>cell_type: structure identified for one sample point (for the abbreviations, see Heude-Berthelin <em>et al.</em> 2023)</li> <li>idpt: identification number of the sampling point</li> <li>id: unique complex identification number of the sampling point generated by combining the x and y coordinates</li> <li>x: x coordinate of the sampling point</li> <li>y: y coordinate of the sampling point</li> <li>reading: Indicates if the reading data was used to test cellular homogeneity (Homogeneity) or to the sexual maturity phase</li> <li>slideid: identification number of the digitized histological slide that was used for the stereological count. Shares the same 12 first characters with <strong>Fish_id</strong></li> </ul> </li> </ul> <p>&nbsp;</p> <p><strong>Contact :</strong></p> <p>This dataset was established under the MATO (MATurit&eacute; Objectif des poissons par l'histologie quantitative) project, during the PhD of Carine Sauger (October 2021-2023), financed by France Filli&egrave;re P&ecirc;che (FFP/2020/AM/MF/109), under the supervision of IFREMER (Institut Fran&ccedil;ais de Recherche pour l'Exploitation de la Mer) and BOREA (Biologie des Organismes et Ecosyst&egrave;mes Aquatiques), and with the collaboration of a research facility from the University of Caen-Normandie : CMABIO3 (Centre de Microscopie Appliqu&eacute;e &agrave; la Biologie). For any enquiries, please contact: carine.sauger@gmail.com or laurent.dubroca@ifremer.fr</p>

opencc-by-4.0Oct 2023View details →
zenodo44/100

Dataset for the manuscript "Are remote sensing evapotranspiration models reliable 2 across South American ecoregions?" published in WRR

<p><strong>Metadata of &lsquo;<em>Are remote sensing evapotranspiration models reliable across South American ecoregions?</em>&rsquo; &nbsp;</strong></p> <p>This document describes the file formatting and data used to run and evaluate the evapotranspiration models in this study. Because forcing data varies among models, each input file contains a different set of meteorological data&nbsp;placed within a folder named after the corresponding model.</p> <p>&nbsp;</p> <p><strong>File format and time stamps</strong></p> <p>Data files are CSV formatted with timestamps in the first column of the file. The following timestamps are used:</p> <ul> <li>GLEAM: Year (YYYY); Day of Year (DDD)</li> <li>PT-JPL: Year (YYYY); Month (MM); Day (DD)</li> <li>PM-MOD: Year (YYYY); Month (MM); Day (DD)</li> <li>PM-VI: Date (MM/DD/YYYY)</li> </ul> <p>&nbsp;</p> <p><strong>Missing data</strong></p> <p>Missing data are reported using &lsquo;NaN&rsquo; as a replacement flag. Data for all days in a leap year are reported.&nbsp;</p> <p>&nbsp;</p> <p><strong>Data format</strong></p> <p>The column headers Name, Description and Units&nbsp;are adopted used in the data files to describe the following variables::</p> <ul> <li>ETo,&nbsp;Penman-Monteith FAO-56 reference evapotranspiration (mm day<sup>-1</sup>);</li> <li>ETobs, Observed evapotranspiration (mm day<sup>-1</sup>);</li> <li>Rn, Surface Net Radiation (w m<sup>-2</sup>);</li> <li>Rg, Daylight shortwave Incoming Radiation (w m<sup>-2</sup>);</li> <li>Rgs_out, Shortwave Radiation -&nbsp;outgoing (w m<sup>-2</sup>);</li> <li>G, Soil heat flux (w m<sup>-2</sup>);</li> <li>P,&nbsp;Rainfall (mm day<sup>-1</sup>);</li> <li>T, Surface Air Temperature (&ordm;C);</li> <li>Tmax,&nbsp;Maximum Temperature (&ordm;C);</li> <li>Tmin, Minimum Temperature (&ordm;C);</li> <li>Tday, Daytime Temperature (&ordm;C);</li> <li>TminDay, Daytime Minimum Temperature (&ordm;C);</li> <li>TminNight, Nighttime Minimum Temperature (&ordm;C);</li> <li>Patm, Atmospheric Air Pressure (Pa);</li> <li>ea,&nbsp;Actual Vapor Pressure (kPa);</li> <li>es, Saturation Vapor Pressure (kPa);</li> <li>VPD,&nbsp;Vapor Pressure Deficit (kPa);</li> <li>eaDay, Daytime Actual Vapor Pressure (kPa);</li> <li>eaNight, Nighttime Actual Vapor Pressure (kPa);</li> <li>RH, Air Relative Humidity;</li> <li>RHDayTime, Daytime Air Relative Humidity;</li> <li>RHNightTime, Nighttime Air Relative Humidity;</li> <li>LAI, Leaf Area Index (m&sup2; m<sup>-</sup>&sup2;);</li> <li>SWC, Soil Water Content (mm m<sup>-1</sup>).</li> </ul> <p>&nbsp;</p> <p><strong>Forcing data per model</strong></p> <p>Each model requires a different set of forcing data, as follows:</p> <ul> <li>GLEAM: Rn, P, T, Rgs_out;</li> <li>PT-JPL: Tmax, Rn, RH (or e<sub>a</sub>);</li> <li>PM-MOD: Rg, Tday, TminDay, TminNight, RHDayTime, RHNighttime, eaDay, eaNight;</li> <li>PM-VI: ETo.</li> </ul> <p>&nbsp;</p> <p><strong>Tower sites (IDs)&nbsp;and co-authors/PIs:</strong></p> <ul> <li>SDF: J. P. Quezada and&nbsp;M.&nbsp;Galleguillos;</li> <li>TF1 and TF2: L. Kutzbach and&nbsp;D.&nbsp;Holl;</li> <li>GRO and SLU: G.&nbsp;Posse;</li> <li>BAL and MCC: M. Gassman and&nbsp;C.&nbsp;Perez;</li> <li>PDG, EUC and USR: O.&nbsp;Cabral;</li> <li>FM and SIN: J.S. Nogueira and&nbsp;T. Range;</li> <li>CAA: M. Moura;</li> <li>CST: A. C. D. Antonino;</li> <li>SJO: E. S. Souza and&nbsp;J. R. S. Lima;</li> <li>ESEC:&nbsp;B. Bezerra.</li> </ul>

opencc-by-4.0Oct 2021View details →
zenodo40/100

Figure 3 in Terrestrial Ecoregions of the World: A New Map of Life on Earth

Figure 3. The relative richness of terrestrial mammal species by ecoregion is depicted. Warmer colors denote ecoregions containing richer assemblages.

opencc-by-4.0Oct 2001View details →
zenodo40/100

Figure 2 in Terrestrial Ecoregions of the World: A New Map of Life on Earth

Figure 2. The map of terrestrial ecoregions of the world recognizes 867 distinct units, roughly a fourfold increase in biogeographic discrimination over that of the 193 units of Udvardy (1975). Maps of freshwater and marine ecoregions are similarly needed for conservation planning.

opencc-by-4.0Oct 2001View details →
zenodo40/100

Figure 1. The ecoregions are categorized within 14 in Terrestrial Ecoregions of the World: A New Map of Life on Earth

Figure 1. The ecoregions are categorized within 14 biomes and eight biogeographic realms to facilitate representation analyses.

opencc-by-4.0Oct 2001View details →
zenodo40/100

Figure 4 in Terrestrial Ecoregions of the World: A New Map of Life on Earth

Figure 4. The level of species endemism for terrestrial mammals shows different patterns than that of richness. Warmer colors denote ecoregions containing more endemic species.

opencc-by-4.0Oct 2001View details →
dryad40/100

Ecoregion and community structure influences on the foliar elemental niche of balsam fir (Abies balsamea (L.) Mill.) and white birch (Betula papyrifera Marshall)

<p><strong><span>Context</span></strong><span>: Changes in foliar elemental niche properties, defined by axes of carbon (C), nitrogen (N), and phosphorus (P) concentrations, reflect how species allocate resources under different environmental conditions. For instance, elemental niches may differ in response to large-scale latitudinal temperature and precipitation regimes that occur between ecoregions and small-scale differences in nutrient dynamics based on species co-occurrences at a community level.</span></p> <p><strong><span>Methods</span></strong><span>: at a species level, we compared foliar elemental niche hypervolumes for balsam fir (<em>Abies balsamea</em> (L.) Mill.) and white birch (<em>Betula papyrifera</em> Marshall) between a northern and southern ecoregion. At a community level, we grouped our focal species using plot data into conspecific (i.e., only one focal species is present) and heterospecific groups (i.e., both focal species are present) and compared their foliar elemental concentrations under these community conditions across, within, and between these ecoregions. Between ecoregions at the species and community level, we expected niche hypervolumes to be different and driven by regional biophysical effects on foliar N and P concentrations. At the community level, we expected niche hypervolume displacement and expansion patterns for fir and birch, respectively – patterns that reflect their resource strategy.</span></p> <p><strong><span>Results</span></strong><span>: at the species level, foliar elemental niche hypervolumes between ecoregions differed significantly for fir (F = 14.591, p-value = 0.001) and birch (F = 75.998, p-value = 0.001) with higher foliar N and P in the northern ecoregion. At the community level, across ecoregions, the foliar elemental niche hypervolume of birch differed significantly between heterospecific and conspecific groups (F = 4.075, p-value = 0.021) but not for fir. However, both species displayed niche expansion patterns, indicated by niche hypervolume increases of 35.49% for fir and 68.92% for birch. Within the northern ecoregion, heterospecific conditions elicited niche expansion responses, indicated by niche hypervolume increases for fir of 29.04% and birch of 66.48%. In the southern ecoregion we observed a contraction response for birch (niche hypervolume decreased by 3.66%), and no changes for fir niche hypervolume. Conspecific niche hypervolume comparisons between ecoregions yielded significant differences for fir and birch (F = 7.581, p-value = 0.005 and F = 8.038, p-value = 0.001) as did heterospecific comparisons (F = 6.943, p-value = 0.004, and F = 68.702, p-value = 0.001, respectively). </span></p> <p><strong><span>Conclusions</span></strong><span>: our results suggest species may exhibit biogeographical specific elemental niches – driven by biophysical differences such as those used to describe ecoregion characteristics. We also demonstrate how a species resource strategy may inform niche shift patterns in response to different community settings. Our study highlights how biogeographical differences may influence foliar elemental traits and how this may link to concepts of ecosystem and landscape functionality.</span></p>

opencc-zeroAug 2022View details →
zenodo40/100

Fig. 2. Area diagram depicting relationships among the 24 in Biogeography of freshwater fishes from the Northeastern Mata Atlântica freshwater ecoregion: distribution, endemism, and area relationships

Fig. 2. Area diagram depicting relationships among the 24 coastal drainages analyzed, obtained by parsimony analysis of endemicity based on freshwater fishes. The topology represents the strict consensus of five equally parsimonious trees obtained through a heuristic search (length= 71 steps, CI = 0.521, RI = 0.709).

opencc-by-4.0Jan 2015View details →
zenodo40/100

Fig. 1 in Biogeography of freshwater fishes from the Northeastern Mata Atlântica freshwater ecoregion: distribution, endemism, and area relationships

Fig. 1. Map showing the Northeastern Mata Atlântica ecoregion, the rivers included in the PAE, and the groups recovered from the analysis. Adjacent freshwater ecoregions are: (327) São Francisco, (329) Paraíba do Sul, and (344) Upper Paraná.

opencc-by-4.0Jan 2015View details →
zenodo40/100

Fig. 4 in Molecular identification and characterization of partial COX1 gene from caecal worm (Aulonocephalus pennula) in Northern bobwhite (Colinus virginianus) from the Rolling Plains Ecoregion of Texas

Fig. 4. Molecular Phylogenetic analysis by Maximum Likelihood method. The evolutionary history was inferred using the ML method based on the General Time Reversible model. The phylogenetic tree illustrates COX1 gene sequences of nematodes related to A. pennula. Bootstrap values above 50 are shown in the tree. The tree is drawn to scale, with branch lengths measured in the number of substitutions-per-site. All positions containing gaps and missing data were eliminated. Evolutionary analyses were conducted in MEGA7.

opencc-by-4.0Dec 2017View details →
zenodo40/100

Fig. 1. A in Molecular identification and characterization of partial COX1 gene from caecal worm (Aulonocephalus pennula) in Northern bobwhite (Colinus virginianus) from the Rolling Plains Ecoregion of Texas

Fig. 1. A. Caecum of the wild quail B. Morphology of male and female caecal worm. All the parts of male and female caecal worm Aulonocephalus pennula are marked in Fig. 1B.

opencc-by-4.0Dec 2017View details →
zenodo40/100

Fig. 3 in Molecular identification and characterization of partial COX1 gene from caecal worm (Aulonocephalus pennula) in Northern bobwhite (Colinus virginianus) from the Rolling Plains Ecoregion of Texas

Fig. 3. Pairwise alignment of the sequences of A. pennula and H. gallinarum. Sequence variations between A. pennula and H. gallinarum are highlighted in red. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

opencc-by-4.0Dec 2017View details →
zenodo40/100

Fig. 2. A in Molecular identification and characterization of partial COX1 gene from caecal worm (Aulonocephalus pennula) in Northern bobwhite (Colinus virginianus) from the Rolling Plains Ecoregion of Texas

Fig. 2. A. PCR amplification of COX1 gene using nematode primers. Lane M: 100 bp DNA ladder (Fermentas); lane 1‾4 COX1 gene amplicon (750 bp). B. PCR amplification of partial COX1 gene using gene specific primers. Lane M: 100 bp DNA Marker (Fermentas); lane 1‾4 partial COX1 amplified products (405bp).

opencc-by-4.0Dec 2017View details →
zenodo40/100

Fig. 2 in Predicting seasonal infection of eyeworm (Oxyspirura petrowi) and caecal worm (Aulonocephalus pennula) in northern bobwhite quail (Colinus virginianus) of the Rolling Plains Ecoregion of Texas, USA

Fig. 2. Scatterplot of predicted eyeworm reproduction with temperature 60 days prior to collection date with upper and lower 95% confidence intervals.

opencc-by-4.0Apr 2019View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record