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Dataset results
25 results for “Effector Identification”
MATLAB results files of MS-based analysis and raw photometer data - Systematic identification of allosteric effectors in Escherichia coli metabolism
<p>MATLAB result tables from progress curve analysis for each of the 19 enzymes tested with 79 potential effectors metabolites in MS-based approach. Excel tables with labelled photometer data.</p>
Data from: Identification of candidate effector genes of Pratylenchus penetrans
Pratylenchus penetrans is one of the most important species among root lesion nematodes (RLNs) due to the detrimental and economic impact that it causes in a wide range of crops. Similar to other plant-parasitic nematodes (PPNs), P. penetrans harbors a significant number of secreted proteins that play key roles during parasitism. Here we combined spatially and temporally resolved next generation sequencing datasets of P. penetrans to select a list of candidate genes aimed at the identification of a panel of effector genes for this species. We determined the spatial expression of transcripts of 22 candidate effectors within the esophageal glands of P. penetrans by in situ hybridization. These comprised homologues of known effectors of other PPNs with diverse putative functions, as well as novel pioneer effectors specific to RLNs. It is noteworthy that five of the pioneer effectors encode extremely proline-rich proteins. We then combined in situ localization of effectors with available genomic data to identify a non-coding motif enriched in promoter regions of a subset of P. penetrans effectors, and thus a putative hallmark of spatial expression. Expression profiling analyses of a subset of candidate effectors confirmed their expression during plant infection. Our current results provide the most comprehensive panel of effectors found for RLNs. Considering the damage caused by P. penetrans, this information provides valuable data to elucidate the mode of parasitism of this nematode and offers useful suggestions regarding the potential use of P. penetrans-specific target effector genes to control this important pathogen. This article is protected by copyright. All rights reserved.
Processed mass spectrometry data - systematic identification of allosteric effectors in Escherichia coli metabolism
<p>MATLAB files of processed mass spectrometry data, i.e. full data table after peak picking, annotation and quantification. Additionally, for each of the tested enzymes, the relevant ion traces of substrates and products are extracted, sorted by timepoint and replicate and saved in separate tables.</p>
Data from: Identification of candidate effector genes of Pratylenchus penetrans
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High-throughput identification of Toxoplasma gondii effector proteins that target host cell transcription
GEO Series GSE229505. Toxoplasma gondii; Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Identification of FOXJ1 effectors during ciliogenesis in the fetal respiratory epithelium and embryonic left-right organizer of the mouse - IMCD3 screen
GEO Series GSE89584. Mus musculus. 8 samples. Type: Expression profiling by array.
Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus (MCC)
GEO Series GSE175790. Homo sapiens. 14 samples. Type: Other.
Identification of FOXJ1 effectors during ciliogenesis in the fetal respiratory epithelium and embryonic left-right organizer of the mouse
GEO Series GSE89717. Mus musculus. 16 samples. Type: Expression profiling by array.
Identification of FOXJ1 effectors during ciliogenesis in the fetal respiratory epithelium and embryonic left-right organizer of the mouse - Lung subscreen A
GEO Series GSE89581. Mus musculus. 2 samples. Type: Expression profiling by array.
Identification of a T-bet hi Quiescent Exhausted CD8 T Cell Subpopulation That Can Differentiate into TIM3 + CX3CR1 + Effectors and Memory-like Cells
GEO Series GSE148497. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Identification of FOXJ1 effectors during ciliogenesis in the fetal respiratory epithelium and embryonic left-right organizer of the mouse - Noto screen
GEO Series GSE89583. Mus musculus. 4 samples. Type: Expression profiling by array.
Identification of constitutively-expressed immune effectors in the house fly (Musca domestica) and the transcription factors that regulate them
GEO Series GSE182611. Musca domestica. 28 samples. Type: Expression profiling by high throughput sequencing.
Identification of the AVRa7,AVRa9, AVRa10 and AVRa22 effector genes from barley powdery mildew fungus (Bgh) association analysis between transcript polymorphisms and AVRa phenotypes from 27 Bgh isolat
GEO Series GSE110266. Blumeria hordei. 24 samples. Type: Expression profiling by high throughput sequencing.
Identification of FOXJ1 effectors during ciliogenesis in the fetal respiratory epithelium and embryonic left-right organizer of the mouse - Lung subscreen B
GEO Series GSE89582. Mus musculus. 2 samples. Type: Expression profiling by array.
Identification of a JAK/STAT/miR155HG positive feedback loop in regulating NK cell proliferation and effector functions
GEO Series GSE277650. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus (ATAC-seq)
GEO Series GSE175789. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics
GEO Series GSE168969. Danio rerio. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [RNA-seq]
GEO Series GSE168966. Danio rerio. 24 samples. Type: Expression profiling by high throughput sequencing.
Identification of a distinct IL-10 producing subset of innate lymphoid type-2 effector cells with regulatory potential
GEO Series GSE81882. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Identification of genes involved in macrophage activation and effector functions against Listeria monocytogenes.
GEO Series GSE6256. Mus musculus. 8 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.