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10 results for “Evolutionary conflict”
Data from: Conflicting evolutionary patterns due to mitochondrial introgression and multilocus phylogeography of the Patagonian freshwater crab Aegla neuquensis
BACKGROUND: Multiple loci and population genetic methods were employed to study the phylogeographic history of the Patagonian freshwater crab Aegla neuquensis (Aeglidae: Decopoda). This taxon occurs in two large river systems in the Patagonian Steppe, from the foothills of the Andes Mountains east to the Atlantic Ocean. METHODOLOGY/PRINCIPAL FINDINGS: A nuclear phylogeny and multilocus nested clade phylogeographic analysis detected a fragmentation event between the Negro and Chico-Chubut river systems. This event occurred approximately 137 thousand years ago. An isolation-with-migration analysis and maximum-likelihood estimates of gene flow showed asymmetrical exchange of genetic material between these two river systems exclusively in their headwaters. We used information theory to determine the best-fit demographic history between these two river systems under an isolation-with-migration model. The best-fit model suggests that the Negro and the ancestral populations have the same effective population sizes; whereas the Chico-Chubut population is smaller and shows that gene flow from the Chico-Chubut into the Negro is four times higher than in the reverse direction. Much of the Chico-Chubut system appears to have only been recently colonized while the Negro populations appear to have been in place for most of the evolutionary history of this taxon. CONCLUSIONS/SIGNIFICANCE: Due to mitochondrial introgression, three nuclear loci provided different phylogeographic resolution than the three mitochondrial genes for an ancient fragmentation event observed in the nuclear phylogeny. However, the mitochondrial locus provided greater resolution on more recent evolutionary events. Our study, therefore, demonstrates the need to include both nuclear and mitochondrial loci for a more complete understanding of evolutionary histories and associated phylogeographic events. Our results suggest that gene flow between these systems, before and after fragmentation was through periodic paleolakes that formed in the headwaters region. Fragmentation between the Negro and Chico-Chubut systems was driven by the disappearance of these paleolakes during the Patagonian Glaciation.
The geometry of evolutionary conflict
Conflicts of interest abound not only in human affairs but also in the biological realm. Evolutionary conflict occurs over multiple scales of biological organization, from genetic outlawry within genomes, to sibling rivalry within nuclear families, to collective-action disputes within societies. However, achieving a general understanding of the dynamics and consequences of evolutionary conflict remains an outstanding challenge. Here, we show that a development of R. A. Fisher's classic "geometric model" of adaptation yields novel and surprising insights into the dynamics of evolutionary conflict and resulting maladaptation, including the discoveries that: (1) conflict can drive evolving traits arbitrarily far away from all parties' optima and, indeed, if all mutations are equally likely then contested traits are more often than not driven outwith the zone of actual conflict (hyper-maladaptation); (2) evolutionary conflicts drive persistent maladaptation of orthogonal, non-contested traits (para-maladaptation); and (3) modular design greatly ameliorates conflict-driven maladaptation, thereby facilitating major transitions in individuality.
The geometry of evolutionary conflict
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Data from: Conflicting evolutionary patterns due to mitochondrial introgression and multilocus phylogeography of the Patagonian freshwater crab Aegla neuquensis
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Data from: Eco-evolutionary dynamics of sexual selection and sexual conflict
1.The research framework of eco‐evolutionary dynamics is increasing in popularity, as revealed by a steady stream of review articles and a recent and influential book, but primary empirical research is lagging behind. Moreover, the few empirical case studies demonstrating eco‐evolutionary dynamics might not be entirely representative. 2.Much current research on eco‐evolutionary dynamics is focused on how ecological interactions lead to natural selection on phenotypic traits ("eco‐evo"), and in turn how the evolutionary change in such traits feed back on ecological dynamics ("evo‐eco"). A key feature of eco‐evolutionary dynamics is thus a feedback loop between ecology (e. g. population dynamics) and evolution (i. e. genetic change). 3.In contrast to previous research on eco‐evolutionary dynamics driven by natural selection, the role of eco‐evolutionary feedbacks in sexual selection and sexual conflict are largely unknown. Here, I review theory and the limited empirical evidence in this area and identify some promising future lines of research. 4.I update a past review on contemporary evolution of secondary sexual traits in natural populations and formulate six explicit and rigorous criteria for contemporary evolution of secondary sexual traits by natural or sexual selection or sexual conflict. I then discuss the other key prediction of eco‐evolutionary dynamics (i. e. evolution by sexual selection or sexual conflict shapes ecological dynamics). My overview reveal that our current knowledge in this area is limited and mainly come from theoretical models and laboratory experiments. 5.A major challenge in eco‐evolutionary dynamics is therefore to link ecological and population dynamics with sexual selection and sexual conflict. This is not an easy task but might be possible with carefully chosen study systems and methods.
Data from: Evolutionary origins of teeth in jawed vertebrates: conflicting data from acanthothoracid dental plates ('Placodermi')
Placoderms (Devonian fossil fishes) are resolved phylogenetically to the base of jawed vertebrates and provide important evidence for evolutionary origins of teeth, particularly with respect to the Arthrodira. The arthrodires represent a derived group of placoderms; the dentition of other more primitive placoderms such as the acanthothoracids is less well known. Articulated acanthothoracid dental plates are rare; x-ray computed tomography of a single, unique specimen, along with 3D segmentation of bone, oral denticles and vascular spaces, provides intrinsic developmental and topological information relevant to tooth origins. Recently, a disarticulated element was identified as a dental plate of the acanthothoracid Romundina stellina, with synchrotron microtomography providing characters to comment on ongoing debates regarding the evolution of teeth. We used segmental quantitative methods to re-analyse this data, for comparison to the articulated and unquestionable acanthothoracid dental plates above. We demonstrate substantial differences between these, disputing the identity of the isolated plate of R. stellina as a dental plate, and thus its relevance to questions of tooth evolution.
Data from: Conflicting evolutionary histories of the mitochondrial and nuclear genomes in New World Myotis bats
The rapid diversification of Myotis bats into more than 100 species is one of the most extensive mammalian radiations available for study. Efforts to understand relationships within Myotis have primarily utilized mitochondrial markers and trees inferred from nuclear markers lacked resolution. Our current understanding of relationships within Myotis is therefore biased towards a set of phylogenetic markers that may not reflect the history of the nuclear genome. To resolve this, we sequenced the full mitochondrial genomes of 37 representative Myotis, primarily from the New World, in conjunction with targeted sequencing of 3,648 ultraconserved elements (UCEs). We inferred the phylogeny and explored the effects of concatenation and summary phylogenetic methods, as well as combinations of markers based on informativeness or levels of missing data, on our results. Of the 294 phylogenies generated from the nuclear UCE data, all are significantly different from phylogenies inferred using mitochondrial genomes. Even within the nuclear data, quartet frequencies indicate that around half of all UCE loci conflict with the estimated species tree. Several factors can drive such conflict, including incomplete lineage sorting, introgressive hybridization, or even phylogenetic error. Despite the degree of discordance between nuclear UCE loci and the mitochondrial genome and among UCE loci themselves, the most common nuclear topology is recovered in one quarter of all analyses with strong nodal support. Based on these results, we re-examine the evolutionary history of Myotis to better understand the phenomena driving their unique nuclear, mitochondrial, and biogeographic histories.
Data from: Conflicting evolutionary histories of the mitochondrial and nuclear genomes in New World Myotis bats
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Data from: Eco-evolutionary dynamics of sexual selection and sexual conflict
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Data from: Evolutionary origins of teeth in jawed vertebrates: conflicting data from acanthothoracid dental plates (‘Placodermi’)
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