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150 results for “Family Functioning”
Metagenomes: gene function and family annotations
<p>Functional annotations of genes for all contigs in 1,782 metagenomes.</p> <p>Genes were annotated to three sources: (1) COGs, (2) Pfams, and (3) <em>de novo</em> families from reference sequences. These gene annotations are used to train and run PlasX.</p>
Figure 1 in Molecular evidence on evolutionary switching from particle-feeding to sophisticated carnivory in the calanoid copepod family Heterorhabdidae: drastic and rapid changes in functions of homologues
Figure 1. Morphology-based phylogenetic trees of the heterorhabdids. A and B, Ohtsuka et al. (1997); C, Park (2001).
Fig. 1 in An instance of intergeneric copulation in the family Rhopalidae (Heteroptera): structure, functioning and congruence of the genitalia in two different species from the standpoint of the lock-and-key hypothesis
Fig. 1. Copulation of Corizus hyoscyami (male) and Rhopalus parumpunctatus (female), Novgorod Province. Photograph by E.Yu. Kirtsideli.
Fig. 12 in An instance of intergeneric copulation in the family Rhopalidae (Heteroptera): structure, functioning and congruence of the genitalia in two different species from the standpoint of the lock-and-key hypothesis
Fig. 12. Female internal ectodermal genitalia in Corizus hyoscyami. b.g.c, basal part of gynatrial cone; a.g.c, apical part of gynatrial cone; l.p.g, lateral pouches of gynatrial sac. The basal part of gynatrial cone is shown in more or less dorso-ventral plane. Scale bar: 0.14 mm.
Fig. 6 in An instance of intergeneric copulation in the family Rhopalidae (Heteroptera): structure, functioning and congruence of the genitalia in two different species from the standpoint of the lock-and-key hypothesis
Fig. 6. Completely inflated aedeagus of Rhopalus parumpunctatus. Dry preparation in dorsal view. Scale bar: 0.14 mm
Figs 10, 11 in An instance of intergeneric copulation in the family Rhopalidae (Heteroptera): structure, functioning and congruence of the genitalia in two different species from the standpoint of the lock-and-key hypothesis
Figs 10, 11. Female terminalia in Rhopalus parumpunctatus. 10, external terminalia, ventral view; 11, internal ectodermal genitalia, dorsal view. b.g.c, basal part of gynatrial cone; a.g.c, apical part of gynatrial cone; gon, gonangulum; gp.I, gonapophysis I; f.d.w, fold on dorsal wall of basal part of gynatrial cone; gp.II, gonapophysis II; gx.VIII, gonocoxite VIII; gx.IX, gonocoxite IX; l.p.g, lateral pouches of gynatrial sac; lt.VIII, laterotergite VIII; lt.IX, laterotergite IX; prg, proctiger; sp.d, spermathecal duct. At fig. 10, the genital plates are shown somewhat driven apart and the inner margins of laterotergites IX are shown slightly turned ventrally; at fig. 11, the basal part of gynatrial cone is shown in more or less dorso-ventral plane. Scale bar: 0.14 mm.
Figs 4, 5 in An instance of intergeneric copulation in the family Rhopalidae (Heteroptera): structure, functioning and congruence of the genitalia in two different species from the standpoint of the lock-and-key hypothesis
Figs 4, 5. Aedeagus of Rhopalus parumpunctatus in intermediate stages of inflation.4, earlier stage of inflation; 5, somewhat later stage of inflation. Wet preparations in dorsal view. b.p.v., basal part of vesica; h.bd, hyaline band. Scale bar: 0.14 mm.
Figs 2, 3 in An instance of intergeneric copulation in the family Rhopalidae (Heteroptera): structure, functioning and congruence of the genitalia in two different species from the standpoint of the lock-and-key hypothesis
Figs 2, 3. Aedeagus of Rhopalus parumpunctatus. 2, at rest; 3, at very beginning of inflation. Wet preparations in dorsal view. a.p.v, apical part of vesica; ar.s, articular sclerite; d-l.l, dorso-lateral lobes of conjunctiva; ej.r, ejaculatory reservoir; l.l.v, left lobe of basal part of vesica; r.l.v, right lobe of basal part of vesica; s.gp, secondary gonopore. Scale bar: 0.14 mm.
Data from: A eudicot MIXTA family ancestor likely functioned in both conical cells and trichomes
<p>The <em>MIXTA</em> family of MYB transcription factors modulate the development of diverse epidermal features in land plants. This study investigates the evolutionary history and function of the <em>MIXTA </em>gene family in the early-diverging eudicot model lineage <em>Thalictrum </em>(Ranunculaceae), with R2R3 SBG9-A MYB transcription factors representative of the pre core-eudicot duplication and thus hereby referred to as "paleo<em>MIXTA</em>" (<em>PMX</em>).</p> <p>Cloning and phylogenetic analysis of <em>Thalictrum paleoMIXTA</em> (<em>ThPMX</em>) orthologs across 23 species reveals a genus-wide duplication coincident with a Whole Genome Duplication. Expression analysis by qPCR confirmed the highest expression is found in carpels, while newly revealing high expression in leaves and nuanced differences between paralogs in representative polyploid species. The single copy ortholog from the diploid species <em>T. thalictroides </em>(<em>TthPMX</em>, previously <em>TtMYBML2</em>),<em> </em>which has petaloid sepals with conical papillate cells and trichomes on leaves, was functionally characterized by virus induced gene silencing (VIGS) and its role in leaves was also assessed from heterologous over-expression in tobacco. Another ortholog from a species with conical papillate cells on stamen filaments, <em>TclPMX</em>, was also targeted for silencing. Overexpression assays in tobacco provide further evidence that the <em>paleoMIXTA</em> lineage has the potential for leaf trichome function in a core eudicot. Transcriptome analysis by RNA-Seq on leaves of VIGS-treated plants suggests<em> </em>that <em>TthPMX </em>modulates<em> </em>leaf trichome development and morphogenesis through microtubule-associated mechanisms and that this may be a conserved pathway for eudicots. These experiments provide evidence for a combined role for <em>paleoMIXTA</em> orthologs in (leaf) trichomes and (floral) conical papillate cells that, together with data from other systems, makes the functional reconstruction of a eudicot ancestor most likely as also having a combined function.</p>
Fig 1 in Different responses of epigeic beetles to heavy metal contamination depending on functional traits at the family level
Fig 1. Diagram of non-metric multidimensional scaling of beetle assemblages classified to three groups of contamination (square- almost uncontaminated sites, circle- moderately contaminated sites, diamond- highly contaminated sites)
Fig 2 in Different responses of epigeic beetles to heavy metal contamination depending on functional traits at the family level
Fig 2. Mean total density ± SE of the most frequently occurring groups of beetles in three classes of contaminations along the season (circle- almost uncontaminated sites, square- moderately contaminated sites, triangle- highly contaminated sites).
Patterns of functional diversity along latitudinal gradients of species richness in eleven fish families
<p><strong>Aim</strong>: As we enter an era of major biodiversity shifts, understanding large-scale biodiversity patterns has become crucial for ecological and conservation purposes. Often, conservation priorities are based on concepts derived largely from species richness, yet recent works show that different facets of biodiversity are also critical for proper ecosystem continuity, function, and services. One facet of biodiversity increasingly relevant to conservation is functional diversity. Here, we aim to improve our understanding of large-scale patterns of biodiversity by testing the hypothesis that species richness can also accurately estimate functional diversity along the latitudinal gradient of species richness in fish.</p> <p><strong>Location</strong>: Marine Environments.</p> <p><strong>Time</strong> <strong>Period</strong>: Contemporary Major taxa studied: 842 species within eleven fish families; Acanthuridae, Blenniidae, Chaetodontidae, Gobiidae, Labridae, Lutjanidae, Pleuronectidae, Pomacanthidae, Pomacentridae, Scombridae, Sparidae.</p> <p><strong>Methods</strong>: Using geometric morphometrics to calculate morphological diversity, a proxy for functional diversity, we estimated expected functional diversity for a given number of species and compared it to the observed functional diversity in fish families along latitudes. We then fit a brokenstick regression model with estimates of functional diversity over absolute degree of latitudes to locate latitudes where significant shifts in functional diversity occur.</p> <p><strong>Results</strong>: We found that species richness typically over- or under-estimated functional diversity along the latitudinal gradient of species richness in the evaluated fishes. We also show that for most families investigated, there is a pattern of stable functional diversity from the equator through the tropics that shifts with a mean inflection point occurring at absolute latitude 31.7° ± 10.1°. We suggest this pattern may be linked to changes in environmental factors such as global temperature and/or habitat availability beyond tropical latitudes, however, these concepts require more study.</p> <p><strong>Main</strong> <strong>conclusion</strong>: This analysis shows the importance of further considering functional diversity in combination with other biodiversity metrics when developing conservation priorities and policies.</p>
Data from: The structure of an ancient genotype-phenotype map shaped the functional evolution of a protein family
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Patterns of functional diversity along latitudinal gradients of species richness in eleven fish families
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Data from: A eudicot MIXTA family ancestor likely functioned in both conical cells and trichomes
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ER values of the targeted by-products as a function of their metallogenic family. The bold text highlights the most relevant metal association regarding the selected metallogenic families.
<p>This dataset is table 3 from the article "Predictive assessment of metallogenic signatures using the DataBase Querying (DBQ) method: A European application by Blandine Gourcerol *, Guillaume Bertrand, Laurent Bailly, Pauline Moreau, Isabelle Duhamel-Achin, Maxime Picault, Philippe Négrel</p> <p>DOI : https://doi.org/10.1016/j.gexplo.2022.106966</p>
Figs 12–14 in Functional morphology of the male genitalia of the family Autostichidae (Lepidoptera) with description of a new genus and a new species from the Russian Far East
Figs 12–14. Autosticha modicella, functional morphology of the male genitalia. 12 –
Fig. 11 in Functional morphology of the male genitalia of the family Autostichidae (Lepidoptera) with description of a new genus and a new species from the Russian Far East
Fig. 11. Laszlogozmanya eclecticus sp. n., functional morphology of the male genitalia,
Figs 8–10 in Functional morphology of the male genitalia of the family Autostichidae (Lepidoptera) with description of a new genus and a new species from the Russian Far East
Figs 8–10. Laszlogozmanya eclecticus sp. n., functional morphology of the male geni-
Figs 4–7 in Functional morphology of the male genitalia of the family Autostichidae (Lepidoptera) with description of a new genus and a new species from the Russian Far East
Figs 4–7. Laszlogozmanya eclecticus sp. n., genitalia. 4 – male genitalia without aedeagus,
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.