Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
29
datasets available to search
ShareScore release 0.7.1
Dataset results
29 results for “Firmicutes”
Fig. 2 in A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the isolates and their relatives of the phylum Bacteroidetes. Bootstrap values (>70%) are shown. Filled circles indicate that both maximum-likelihood and maximum-parsimony trees obtained the same node arrangement, while empty circles indicate either only maximum-likelihood or maximum-parsimony obtained the same corresponding nodes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.
Fig. 5 in A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019
Fig. 5. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the isolates and their relatives of the orders Clostridiales and Lactobacillales. Bootstrap values (>70%) are shown. Filled circles indicate that both maximum-likelihood and maximum-parsimony trees obtained the same node arrangement, while empty circles indicate either only maximum-likelihood or maximum-parsimony obtained the same corresponding nodes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 3 in A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019
Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the isolates and their relatives of the family Bacillaceae. Bootstrap values (>70%) are shown. Filled circles indicate that both maximum-likelihood and maximum-parsimony trees obtained the same node arrangement, while empty circles indicate either only maximum-likelihood or maximum-parsimony obtained the same corresponding nodes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019
Fig. 1. Transmission electron micrographs of cells. Strains: 1, LPB0329; 2, SO92; 3, FS31; 4, BT243; 5, F-49; 6, HMF9403; 7, SS28; 8, HMF6110; 9, HMF6096; 10, HMF6964; 11, R20; 12, 19D1S38; 13, LPB0288; 14, CAU 1601; 15, LPB0313; 16, BT246; 17, JBTF-M5; 18, LPB0275; 19, 19D1F21; 20, DN10; 21, 19D1C9; 22, LPB0284; 23, N17; 24, BT366; 25, BT245; 26, CAU 1600; 27, BSSK_R2A22; 28, FS120; 29, CAU 1604; 30, DS-19; 31, NC2; 32, CAU 1557; 33, CAU 1563; 34, CAU 1572; 35, CAU 1562; 36, LPB0311; 37, LPB0214; 38, YG19; 39, AM8; 40, AM13; 41, LPB0309; 42, LPB0308; 43, LPB0307.
Fig. 4 in A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019
Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the isolates and their relatives of the families Paenibacillaceae, Planococcaceae and Staphylococcaceae. Bootstrap values (>70%) are shown. Filled circles indicate that both maximum-likelihood and maximum-parsimony trees obtained the same node arrangement, while empty circles indicate either only maximum-likelihood or maximum-parsimony obtained the same corresponding nodes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Report on 30 unrecorded bacterial species of the phylum Firmicutes isolated from Korea in 2016
Fig. 2. Maximum-likelihood phylogenetic tree of isolates and related taxa belonging to the order Bacillales. Filled circles indicate the nodes that were recovered in the trees generated by both the neighbour-joining (NJ) and the maximum-likelihood (ML) methods. Numbers at nodes represent bootstrap values (NJ/ML) based on 1000 replicated datasets. Only values above 50% are shown. Bar, 0.1 substitutions per nucleotide position.
Fig. 1 in Report on 30 unrecorded bacterial species of the phylum Firmicutes isolated from Korea in 2016
Fig. 1. Transmission election micrographic and scanning electron micrographic images of isolated cells. Strains: 1, HMF7750; 2, ATS3402; 3, PTS2210; 4, AR23209; 5, PR23219; 6, PR23304; 7, AR23203; 8, PMA3404; 9, AMR3201; 10, AMR3203; 11, PR22215; 12, AR23201; 13, AMA2302; 14, ATS2307; 15, PR22212; 16, AR23202; 17, H18Y; 18, CAU 1342; 19, CAU 1339; 20, LPB0128; 21, LPB0129; 22, LPB0134; 23, LPB0160; 24, CF2; 25, NF3-3-1; 26, BE2-15; 27, BE2-30; 28, BE3-11; 29, JMW-27; 30, DMHB11.
Fig. 3 in Report on 30 unrecorded bacterial species of the phylum Firmicutes isolated from Korea in 2016
Fig. 3. Maximum-likelihood phylogenetic tree of isolates and related taxa belonging to the order Lactobacillales. Filled circles indicate the nodes that were recovered in the trees generated by both the neighbour-joining (NJ) and the maximum-likelihood (ML) methods and numbers at nodes represent bootstrap values (NJ/ML) based on 1000 replicated datasets. Only values above 50% are shown. Bar, 0.1 substitutions per nucleotide position.
Fig. 1 in Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1. RS35 B; 2. DE L 1 4; 3. DE L 2 2; 4. J27; 5. J29; 6. WRM2W; 7. MA19; 8. HME8790; 9. KYW872; 10. PM1; 11. OR L 1 6; 12. OR L 2 3; 13. MR1; 14. IK36; 15. HY M 2 2; 16. H421 H; 17. RS51; 18. Rk57 B; 19. MS514; 20. MK52; 21. UEJ41 D; 22. CT11; 23. SJ26; 24. ES05 9M1MA; 25. CNS51; 26. OR Y 1 1.
Fig. 2 in Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes
Fig. 2. Neighborjoining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the family Bacillaceae. Bootstrap values (>50%) are shown at nodes. Filled circles indicate the nodes recovered by three other treeing methods including maximum likelihood, maximum parsimony, and neighbor joining. Bar, 0.01 substitutions per nucleotide position.
Fig. 3 in A report of 26 unrecorded bacterial species in Korea, belonging to the Bacteroidetes and Firmicutes
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Firmicutes. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 4 in Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes
Fig. 4. Neighborjoining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the family Paenibacillaceae. Bootstrap values (>50%) are shown at nodes. Filled circles indicate the nodes recovered by three other treeing methods including maximum likelihood, maximum parsimony, and neighbor joining. Bar, 0.01 substitutions per nucleotide position.
Fig. 1 in A report of 26 unrecorded bacterial species in Korea, belonging to the Bacteroidetes and Firmicutes
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, WM10; 2, WW2; 3, JJ9006; 4, WS101; 5, JJ9011; 6, HME8661; 7, WS78; 8, 2013 C18; 9, HME9268; 10, M-M24; 11, BM17; 12, JJ9009; 13, HDW8; 14, HD32; 15, 2013 C56; 16, HME8520; 17, G9-2; 18, DT7-08; 19, DT2-01; 20, M4Y-2-1; 21, JJ9001; 22, G-M13; 23, 2013 C17; 24, ST5- 08; 25, WT2K-1; 26, PA4; 27, EMB6; 28, WT2K-2.
Fig. 2 in A report of 26 unrecorded bacterial species in Korea, belonging to the Bacteroidetes and Firmicutes
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Bacteroidetes. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.05 substitutions per nucleotide position.
Fig. 3 in Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes
Fig. 3. Neighborjoining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the family Enterococcaceae, Lactobacillaceae, Planococcaceae, Staphylococcaceae, and Streptococcaceae. Bootstrap values (>50%) are shown at nodes. Filled circles indicate the nodes recovered by three other treeing methods including maximum likelihood, maximum parsimony, and neighbor joining. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020
Fig. 1. Transmission electron micrographs and scanning electron micrographs of cells of the species belonging to Firmicutes isolated in this study. Strains: 1. KYW2075; 2. MMS20-LR456; 3. MMS20-HD16; 4. MMS20-AI2-23T; 5. JHSTF-M24; 6. KYW2175; 7. CAU 1626; 8. BDTF-R2; 9. HMF5486; 10. HMG1274; 11. JHSTF-R20; 12. JHPTF-R3; 13. HMF5593; 14. MMS20-LR3019; 15. CAU 1627; 16. I2-44; 17. CAU 1608; 18. BM-39; 19. B5; 20. BM-27.
Fig. 3 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Lactobacillales. Bootstrap values are shown at branch points based on 1000 replicated datasets; only values above 70% are shown. Enterococcus faecalis ATCC 19433T (AB012212) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Bacillales. Bootstrap values are shown at branch points based on 1000 replicated datasets; only values above 70% are shown. Thermoactinomyces vulgaris KCTC 9076T (AF138739) was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.
Fig. 2 in A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes
Fig. 2. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, MBM12; 2, NMD 3Y-3-3; 3, HMF2471; 4, Kef2; 5, Eg81205; 6, EgN2201; 7, CF4; 8, CF7; 9, CH2-1; 10, MB2M14.
Fig. 1 in A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes
Fig. 1. Neighbor-joining tree based on 16S rRNA gene sequences showing the phylogenetic relationships between the strains isolated in this study and their relatives of the class Bacilli. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Filled circles indicate the nodes were also recovered in maximum-likelihood tree. Bootstrap values (>70%) are shown above nodes. Scale bar, 0.02 substitutions per nucleotide.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.