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10 results for “Franche-Comté”
Population dynamics of small mammals in the Jura massif, Franche-Comté, France (1979-2000)
<p>Small mammal populations were monitored seasonally from August 1979 to July 2000 according to a stratified sampling plan and using standard trapping, mostly in the area of Septfontaines – Le Souillot, Doubs, France (6.18°E, 46.97°N). The dataset includes 2120 trap lines (90% n = 1912 in the Septfontaines – Le Souillot (LS) area), and 22848 captures (92% n = 20937 in the LS area).</p> <p><strong>Methods</strong></p> <p>Small mammals were captured using INRA trap lines. INRA live traps (15 × 5 × 5 cm) are suitable for species of body mass less than 50 g. In a standard way generally applied here,each trap line consisted of 34 live traps spaced 3 meters apart. Trap lines were set up for three nights and checked every morning. Animals were euthanized by cervical dislocation, weighed and dissected for sex, reproductive status and age determination. Liver was examined macroscopically for parasites. Relative age was estimated based on the dry weight of crystalline eye lenses.</p> <p><em>Caveats:</em> in a very little number of cases (beginning of the study and circumstantial occasions) trap lines were not standard (150 m length, 51 traps, or set up for one or two nights only, etc.). See <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a> and fields "remarques" (table <a href="http://zenodo.org/record/6997317/files/traplines.txt?download=1">traplines.txt</a>) and 'observation' (table <a href="http://zenodo.org/record/6997317/files/captures.txt?download=1">captures.txt</a>). Sometimes field not informed have been coded "", 99 or NA. Although we did our best to harmonize this in the files uploaded, some inconsistencies might remain. Those issues should be considered carefully before data analysis.</p> <p>Trapping and animal handling was carried out in full accordance with the relevant European guidelines (Directive 86/609/EEC) and national regulations. INRA (<em>Institut National de la Recherche Agronomique</em>), the umbrella organization under which the field work was carried out, created its first ethical committee in 1998. It was therefore impossible to get formal ethical approval prior to the major part of the study. A similar research protocol used from 2014 to 2017 received full approval from the <em>Comité d’Éthique Bisontin en Expérimentation Animale</em> (CEBEA No. 58).</p> <p><strong>FILE DESCRIPTION</strong></p> <p>Files <a href="https://zenodo.org/record/6997317/files/traplines.txt?download=1">traplines.txt</a>, <a href="https://zenodo.org/record/6997317/files/Ccaptures.txt?download=1">captures.txt</a> and <a href="https://zenodo.org/record/6997317/files/rates.txt?download=1">rates.txt</a> are tables of a relational database. They can be linked using the index field 'codeligne' between <a href="https://zenodo.org/record/6997317/files/traplines.txt?download=1">traplines.txt</a> and <a href="https://zenodo.org/record/6997317/files/captures.txt?download=1">captures.txt</a>, and 'codeind' between <a href="https://zenodo.org/record/6997317/files/captures.txt?download=1">captures.txt</a> and <a href="https://zenodo.org/record/6997317/files/rates.txt?download=1">rates.txt</a>.</p> <p><strong>Main files</strong></p> <p><a href="https://zenodo.org/record/6997317/files/captures.txt?download=1">captures.txt</a></p> <ul> <li>codeligne, trapline ID</li> <li>numind, specimen ID for the trap line</li> <li>numcontr, control number (traps were controlled every morning; for 3 successive nights for standard trap lines). E.g. 1 for a specimen captured on the 1st control.</li> <li>numpiege, trap ID in the trap line (1,2,....n). E.g. 34 is the 34th trap in the trap line counted from the beginning.</li> <li>espece, species (see <a href="http://zenodo.org/record/6997317/files/Codes_Sp_Parasites.docx?download=1">Codes_Sp_Parasites.docx</a> for the codes)</li> <li>poids, wet weight in g</li> <li>sexe, sex (1 male, 2 female)</li> <li>cristallin, dry weight of the two crystalline lens, in 1/10 of mg</li> <li>uterus, uterus diameter</li> <li>foetusd, number of foetuses in the uterus right horn</li> <li>foetusg, number of foetuses in the uterus left horn</li> <li>cicplacd, number of placental scares in the uterus right horn</li> <li>cicplacg, number of placental scares in the uterus left horn</li> <li>corpsjd, number of <em>corpus luteum</em> in the right ovary</li> <li>corpsjg, number of <em>corpus luteum</em> in the left ovary</li> <li>allaitante, milking (1 yes, 0 no)</li> <li>corpsblancd, number of <em>corpus albicans</em> in the right ovary</li> <li>corpsblancg, number of <em>corpus albicans</em> in the left ovary</li> <li>testd, length of the right testicle</li> <li>testg, length of the left testicle</li> <li>vesd, length of the right seminal vesicle</li> <li>vesg, length of the left seminal vesicle</li> <li>diammax, parasite mass great diameter</li> <li>diammin, parasite mass small diameter</li> <li>nombrekyste, parasite cyst number</li> <li>nomlu, parasite species as identified in the field</li> <li>nomanaly, parasite species as identified in the lab</li> <li>observation, remark</li> <li>codeind, specimen ID (codeligne+numind)</li> </ul> <p><a href="https://zenodo.org/record/6997317/files/rates.txt?download=1">rates.txt </a></p> <ul> <li>codeind, specimen ID</li> <li>ratepds, spleen weight (1/100 g)</li> <li>remarque, remark</li> </ul> <p><a href="https://zenodo.org/record/6997317/files/traplines.txt?download=1">traplines.txt</a></p> <ul> <li>codeligne, 8 digits trap line ID. LS891001 = location LS, 89 year, 10 month, 01, trap line ID for this place, year and month. See <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a> for more details.</li> <li>dept, administrative department (INSEE code)</li> <li>date, date at which the trapline has been set up</li> <li>descripteur1, habitat description, <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a></li> <li>descripteur2, habitat description, see <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a></li> <li>facies, habitat description, see <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a></li> <li>remarque, remark,</li> <li>lati, latitude of the northwest corner of the sampling grid (CRS NTF (Paris) / Lambert zone II, EPSG: 27572), see <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a></li> <li>longi, longitude of the northwest corner of the sampling grid (CRS NTF (Paris) / Lambert zone II, EPSG: 27572), see <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a></li> <li>precis, precision, the number of Lambert II squares (1km x 1km) composing the square side of the grid, see <a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a></li> </ul> <p><strong>Supplementary files</strong></p> <p><a href="https://zenodo.org/record/6997317/files/bboxlarge.kml?download=1">bboxlarge.kml</a>, the bounding box including all the area with trap lines that could be geographically located. It takes the precision of the location into account (hence, includes the southeastern extremes of the grid squares (see Codes_Trapline.docx).</p> <p><a href="https://zenodo.org/record/6997317/files/bboxLS.kml?download=1">bboxLS.kml</a>, the bounding box of the study area "LS" (Le Souillot) including all the trap lines that could be geographically located. It takes the precision of the location into account (hence, includes the southeastern extremes of the grid squares, see <a href="https://zenodo.org/record/6997317/files/Codes_trapline.docx?download=1">Codes_Trapline.docx</a>). Those trap lines are the core (90% of the total number of the traplines set) of the research carried out in the area.</p> <p><a href="https://zenodo.org/record/6997317/files/lineloc.kml?download=1">lineloc.kml</a>, the geographical coordinates of the northwestern corner of the square including each trap line with trapline ID and precision (1, square of 1 x 1 km; 2, square of 2 x 2 km, etc.).</p> <p><a href="https://zenodo.org/record/6997317/files/Code_Sp_Parasites.docx?download=1">Codes_Sp_Parasites.docx</a>, codes of small mammal species and parasite names.</p> <p><a href="https://zenodo.org/record/6997317/files/Codes_Trapline.docx?download=1">Codes_Trapline.docx</a>, codes of trap lines.</p>
FIG. 2. — Anatomie d in Caractères diagnostiques morpho-anatomiques d'Oxyloma sarsii (Esmark 1886) (Mollusca Gastropoda Succineidae) et nouvelles données dans le nord-est de la France (Alsace et Franche-Comté)
FIG. 2. — Anatomie d'Oxyloma sarsii (Esmark, 1886): A, A', photographie et dessin d'interprétation de l'appareil génital d'un spécimen provenant du contre canal de drainage du Rhin à Fort-Louis (Bas-Rhin) (spécimen spc11(67)-C2 sur la Fig. 1 et figuré en E à gauche); B, partie distale de l'épiphallus enroulé dans la gaine conjonctive qui entoure le complexe pénien; C, C', photographie et dessin d'interprétation du complexe pénien en partie débarrassé de la gaine conjonctive, seule la partie distale de l'épiphallus est ici encore enroulée (pointillés) dans la gaine conjonctive; D, D', photographie et dessin d'interprétation de l'intérieur du pénis; E, pour comparaison, à gauche coquille du spécimen spc11(67)-C2 provenant du Bas-Rhin (hauteur de la coquille 10,5 mm) et à droite spécimen spc5(39) provenant de la Réserve naturelle nationale de l'île du Girard (Jura) (hauteur de la coquille 16,9 mm). Abréviations: voir Matériel et méthodes. Échelles: A, 2,5 mm; B, D, 1 mm; C, 2 mm; E, 5 mm.
FIG. 3 in Caractères diagnostiques morpho-anatomiques d'Oxyloma sarsii (Esmark 1886) (Mollusca Gastropoda Succineidae) et nouvelles données dans le nord-est de la France (Alsace et Franche-Comté)
FIG. 3. — Anatomie et coquille d'Oxyloma elegans (Risso, 1826): A, A', photographie et dessin d'interprétation de l'appareil génital d'un spécimen récolté par Thibaut Durr aux environs de Rolbing en Moselle le 3.VIII.2020. La prostate n'est pas ici en position anatomique; B, B', photographie et dessin d'interprétation du complexe pénien en partie débarrassé de la gaine conjonctive.La partie médiane pénis-épiphallus est encore enroulée (traits en pointillés) dans la gaine conjonctive; C, coquille correspondante au spécimen ici disséqué (hauteur de la coquille 15,3 mm). Abréviations: voir Matériel et méthodes. Échelles: A, 2,5 mm; B, 1 mm; C, 5 mm.
FIG. 1 in Caractères diagnostiques morpho-anatomiques d'Oxyloma sarsii (Esmark 1886) (Mollusca Gastropoda Succineidae) et nouvelles données dans le nord-est de la France (Alsace et Franche-Comté)
FIG. 1. — Habitats et coquilles d'Oxyloma sarsii (Esmark, 1886): A, habitat d'O. sarsii dans un ancien méandre du Doubs dans la Réserve naturelle nationale de l'île du Girard dans le Jura; B, B', individus vivants parmi la végétation en berge et issus de l'habitat illustré en A; C-K, coquilles, après extraction de l'animal, provenant des berges du contre canal de drainage du Rhin à Fort-Louis (Bas-Rhin). Échelle: C-K, 5 mm.
FIG. 4 in Caractères diagnostiques morpho-anatomiques d'Oxyloma sarsii (Esmark 1886) (Mollusca Gastropoda Succineidae) et nouvelles données dans le nord-est de la France (Alsace et Franche-Comté)
FIG. 4. — Anatomie et coquille de Succinea putris (Linnaeus, 1758): A, A', photographie et dessin d'interprétation de l'appareil génital d'un spécimen récolté par Julien Ryelandt aux environs de Rigny en Haute-Saône le 18.VI.2018; B, animal vivant (à proximité de Port-sur-Saône en Haute-Saône); C, coquille correspondante au spécimen ici disséqué (hauteur de la coquille 18,5 mm). Abréviations: voir Matériel et méthodes. Échelles: A, 2,5 mm; C, 5 mm.
Multicenter Prospective Cohort of Informal Caregivers in Burgundy and Franche-Comté
ClinicalTrials.gov study NCT02626377. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Survival After Blood Transfusion in the French Administrative Regions of Burgundy and Franche-Comté
ClinicalTrials.gov study NCT02852993. IPD Sharing: NO. Countries: 1. Publications: 1.
Early Adiposity Rebound Amongst 4-y.o. Children and Overweight Risk Amongst 11-y.o Children : Third Phase of a Cohort Study in Franche-Comté
ClinicalTrials.gov study NCT03342092. IPD Sharing: NO. Countries: 1. Publications: 0.
LIMBO : Breast Reconstruction by Lipomodeling Alone or With Flap: Evaluation in Franche-Comté
ClinicalTrials.gov study NCT06101732. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Evolution of the breeding bird populations in the Drugeon basin, Franche-Comté, France, based on IPA (1998-2020)
<p>Counts were carried out using the IPA method described in Blondel et al (1970), IBCC (1977) and Blondel et al (1981). According to the protocol, two passes with a twenty-minute data collection per listening point were carried out each year (end of April and beginning of May for early breeders and end of May and beginning of June for late breeders), in the morning, in good weather and no wind. A value of 1 is assigned to a species for any visual or auditory contact with a pair, an occupied nest, a family, an adult carrying food, or a singing male, and a value of 0.5 is assigned to a single non-singing bird. The values per species and per passage are added up to a maximum index of 5. For each listening point, the best index of the two passages was retained for the analysis. Data collection was carried out between 6.30 and 9.00 a.m. during the first pass and between 6.00 and 9.00 a.m. during the second. <strong>For more details see Michelat et al. (2023) full reference below.</strong></p> <p><em>IPA distribution according to years and habitats</em></p> <table> <tbody> <tr> <td> </td> <td>Forest</td> <td>Marshes and peatbogs</td> <td>Dry grassland</td> <td>Water body</td> <td>Meadows and pastures</td> <td>River</td> </tr> <tr> <td>1998</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>15</td> </tr> <tr> <td>1999</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2006</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2007</td> <td>0</td> <td>0</td> <td>19</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2008</td> <td>8</td> <td>35</td> <td>0</td> <td>12</td> <td>5</td> <td>0</td> </tr> <tr> <td>2009</td> <td>0</td> <td>35</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> </tr> <tr> <td>2010</td> <td>8</td> <td>0</td> <td>0</td> <td>12</td> <td>5</td> <td>0</td> </tr> <tr> <td>2011</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2012</td> <td>0</td> <td>0</td> <td>19</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2013</td> <td>8</td> <td>36</td> <td>0</td> <td>12</td> <td>5</td> <td>0</td> </tr> <tr> <td>2014</td> <td>0</td> <td>36</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> </tr> <tr> <td>2015</td> <td>8</td> <td>0</td> <td>0</td> <td>14</td> <td>5</td> <td>0</td> </tr> <tr> <td>2016</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2017</td> <td>0</td> <td>0</td> <td>19</td> <td>0</td> <td>0</td> <td>20</td> </tr> <tr> <td>2018</td> <td>8</td> <td>36</td> <td>0</td> <td>14</td> <td>5</td> <td>0</td> </tr> <tr> <td>2019</td> <td>0</td> <td>36</td> <td>0</td> <td>0</td> <td>0</td> <td>0</td> </tr> <tr> <td>2020</td> <td>8</td> <td>0</td> <td>0</td> <td>14</td> <td>5</td> <td>0</td> </tr> </tbody> </table> <p><strong>FILE DESCRIPTION</strong></p> <p><a href="https://zenodo.org/record/7716547/files/IPA_localisation.txt?download=1">IPA_localisation.txt</a></p> <ul> <li>id, IPA Id: digit 1-2, habitat; digit 3-4, IPA number within the habitat</li> <li>habitat</li> <li>iddom, second ID in clear</li> <li>commune</li> <li>lieu, locality</li> <li>long, longitude</li> <li>lat, latitude</li> <li>alt, altitude</li> <li>rnr, Réserve naturelle régionale (yes/no)</li> <li>natura, Natura 2000 area (yes/no)</li> <li>apb, Arrêté de protection de biotope (yes/no)</li> </ul> <p><a href="https://zenodo.org/record/7716547/files/Observations.txt?download=1">Observations.txt</a> IPA values</p> <ul> <li>idipa, IPA Id: digit 1-2, habitat; digit 3-4, IPA number within the habitat</li> <li>an, year</li> <li>column 3 to 144 species names (used to join with the table <a href="http://zenodo.org/record/7716547/files/Species_statuts.txt?download=1">Species_statuts.txt</a><a href="https://zenodo.org/record/7716547/files/Observations.txt?download=1">)</a></li> </ul> <p><a href="http://zenodo.org/record/7716547/files/Species_statuts.txt?download=1">Species_statuts.txt</a></p> <ul> <li>id, id number</li> <li>nom, common name (in French)</li> <li>nomlat, latin name</li> <li>nomab, abridged name (used to join with the table <a href="https://zenodo.org/record/7716547/files/Observations.txt?download=1">Observations.txt)</a>.</li> <li>lre, European red or orange list (LR-CR, red list, critically endangered: LR-EN, red list, endangered; LR-VU, red list, vulnerable; LO-NT, orange list, nearly threatened)</li> <li>lre27, red or orange list in the European Union (27 countries)</li> <li>lrf, French red or orange list</li> <li>lrfc, red of orange list in Franche-Comté</li> <li>lr, present on at least one of 4 red lists</li> <li>lo, present on at least one of 4 orange lists</li> <li>lro, present on at least one of 4 red or orange lists</li> <li>hn, habitat (national)</li> <li>hr, habitat (regional)</li> <li>pref, preference</li> <li>mig, migratory status</li> </ul> <p><strong>SUPPLEMENTARY MATERIAL</strong></p> <ul> <li><a href="https://zenodo.org/record/7716547/files/IPA_distribution_map.png?download=1">IPA_distribution_map.png </a>Map of the IPA locations in the Drugeon basin. The red line indicates the limits of the Natura 2000 Special Protection Area. BD ORTHO © cartographic background kindly provided for research by IGN.</li> <li><a href="https://zenodo.org/record/7716547/files/Graphics.zip?download=1">Graphics.zip</a> Boxplots</li> </ul> <p><strong>BIBLIOGRAPHY</strong></p> <p>Blondel (J.), Ferry (C.) et Frochot (B.) 1970. - La méthode des indices ponctuels d’abondance (IPA) ou relevés d’avifaune par « station s’écoute ». <em>Alauda, </em>38 : 55-71. <a href="https://bibliotheques.mnhn.fr/medias/doc/EXPLOITATION/IFD/MNHN_ALAUD_1970_T038_N001/alauda">Available here</a></p> <p>Blondel (J.), Ferry (C.) & Frochot (B.) 1981. - Points counts with unlimited distance. <em>Studies in Avian Biology, </em>6 : 414-419. <a href="https://sora.unm.edu/node/139141">Available here</a></p> <p>IBCC 1977. - Censuring breeding bird by IPA method. <em>Polish Ecological Studies, </em>3 : 15-17.</p> <p>Michelat, D., Dupuis, O., Vaniscotte, A., Giraudoux, P., 2023. Quarante ans d’évolution du peuplement d’oiseaux nicheurs dans le bassin du Drugeon, Franche-Comté, France. <em>Alauda</em>, 91 (2) : 1-80.</p>
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