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34 results for “Francisella tularensis”
Supplementary Material to the Publication Genotyping of Francisella tularensis subsp. holarctica from Hares in Germany
<p>Supplementary Material in Open Data Format to Publication Genotyping of Francisella tularensis subsp. holarctica from Hares in Germany</p>
Fig. 2 in First molecular detection of Francisella tularensis in turtle (Testudo graeca) and ticks (Hyalomma aegyptium) in Northwest of Iran
Fig. 2. The evolutionary lineage was determined using the Maximum Likelihood method and the Tamura-Nei model. The displayed tree represents the one with the most favorable log likelihood (429.22). Additionally, the branches are accompanied by the percentage denoting how frequently the related taxa formed clusters in the trees. The initial trees for exploratory purposes were automatically created using the Neighbor-Join and BioNJ algorithms. This was accomplished by utilizing a matrix of pairwise distances, which were calculated employing the Tamura-Nei model. From these initial trees, the one with the most favorable log likelihood value was selected. This analysis was conducted on a collection of 31 nucleotide sequences. The encompassed codon positions consisted of 1st+2nd+3rd +Noncoding. The final dataset consisted of a total of 306 positions. The evolutionary analyses were performed utilizing MEGA11.
Fig. 3 in First molecular detection of Francisella tularensis in turtle (Testudo graeca) and ticks (Hyalomma aegyptium) in Northwest of Iran
Fig. 3. The lineage's evolutionary narrative was deduced through the application of the Neighbor-Joining technique. The most advantageous tree configuration is depicted. Adjacent to the branches, the percentages reflect how often the related taxa aggregated within the bootstrap test, comprising 1000 replicates. Evolutionary distances were calculated using the Maximum Composite Likelihood method, expressed as the count of base substitutions per site. In this study, a collective of 32 nucleotide sequences were taken into account. The codon positions covered 1st+2nd+3rd + Noncoding. Ambiguous positions were excluded for each sequence pair, following the pairwise deletion technique. In the culminating dataset, a collective count of 542 positions was encompassed. The evolutionary analyses were executed using MEGA11.
Fig. 1 in First molecular detection of Francisella tularensis in turtle (Testudo graeca) and ticks (Hyalomma aegyptium) in Northwest of Iran
Fig. 1. The schematic map of the studied areas, West Azerbaijan (Oshnavieh), Iran.
Fig. 1 in Molecular survey on the occurrence of avian haemosporidia, Coxiella burnetii and Francisella tularensis in waterfowl from central Italy
Fig. 1. Phylogenetic tree showing the Leucocytozoon sequencing results.
Whole-genome capture and sequencing of Francisella tularensis directly from clinical samples
<p>This dataset comprises:</p> <p><strong>1. The design of RNA oligonucleotide baits for Agilent Technologies’ SureSelect target enrichment - <strong>54756 RNA oligonucleotide "baits" (120 bp each) </strong></strong>designed to perform <strong>whole-genome capture and sequencing of </strong><strong>Francisella tularensis<strong> directly from clinical samples</strong></strong> (DNA) using Agilent Technologies’ SureSelect target enrichment system following the Illumina paired-end multiplexed sequencing library protocol.</p> <p>RNA oligonucleotide “baits” were designed to span the <em>Francisella tularensis </em>chromosome and plasmid, accounting for the genetic variability among publicly available genome sequences. All resulting sequences were BLASTn searched against the Human Genomic + Transcript database to excluded homologous sequences to the human genome. Overall, a total of 54756 RNA probes were generated and this custom bait library was then uploaded to the SureDesign software (https://earray.chem.agilent.com/suredesign) and synthesized by Agilent Technologies.</p> <p><strong>2. Genome assemblies of 17 Francisella tularensis samples generated in the context of validation and application of SureSelect target enrichment for Whole-genome capture and sequencing of Francisella tularensis directly from clinical samples </strong></p> <p>File “<strong>Ft_assembly_metadata.xlsx</strong>” contains the genome assembly statistics for each isolate, including European Nucleotide Archive accession numbers.</p> <p>The archive “<strong>Ft_assemblies.zip</strong>” contains all the genome assemblies (.fasta format) of each isolate presented in the metadata file.</p> <p>More details can be found in the following publication: (available soon)</p>
Safety and Immunogenicity Study of a Live Francisella Tularensis Vaccine
ClinicalTrials.gov study NCT00584844. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: The potential for flower nectar to allow mosquito to mosquito transmission of Francisella tularensis
Open the record for dataset details and reuse information.
Transcriptome RNA Sequencing Data Sets of Francisella tularensis tularensis SchuS4 upon treatment with various concentrations of Doxycycline or Ciprofloxacin antibiotics
GEO Series GSE210974. Francisella tularensis subsp. tularensis SCHU S4. 12 samples. Type: Expression profiling by high throughput sequencing.
Francisella tularensis Schu4 gene expression during infection of mouse spleen
GEO Series GSE39871. Francisella tularensis subsp. tularensis SCHU S4. 1 samples. Type: Expression profiling by array.
Expression profiling of THP-1 cells with and without infection by Francisella tularensis and with or without treatment with Dillapiole
GEO Series GSE306199. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized TLR4 agonist
GEO Series GSE65871. Mus musculus. 55 samples. Type: Expression profiling by array.
Inflammatory gene expression in response to Francisella tularensis exposure in Balb/c mice
GEO Series GSE17248. Mus musculus. 35 samples. Type: Expression profiling by array.
Transcriptomic analysis of Francisella tularensis infected lungs from human AT-1 receptor expressing mice I
GEO Series GSE186016. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The role and mechanism of erythrocyte invasion by Francisella tularensis
GEO Series GSE93233. Francisella tularensis. 10 samples. Type: Expression profiling by high throughput sequencing.
Francisella tularensis subsp. tularensis Induces a Unique Pulmonary Inflammatory Response: Role of Bacterial Gene Expression in Temporal Regulation of Host Defense Responses
GEO Series GSE44320. Mus musculus. 63 samples. Type: Expression profiling by array.
Transcriptome sequencing Data sets for human epithelial cells response during Francisella Tularensis infection.
GEO Series GSE155970. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
Continued Safety and Immunogenicity Study of a Live Francisella Tularensis Vaccine
ClinicalTrials.gov study NCT00787826. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Lung microenvironment effects on T cells following Francisella tularensis vaccination
GEO Series GSE297708. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Identification of Francisella tularensis genes affected by iron limitation
GEO Series GSE3622. Francisella tularensis. 7 samples. Type: Expression profiling by array.
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