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585 results for “Goal”
Transform Problem Statements into Goals - A brief Workshop
<p>In order to enable members of a socio-technical evolutionary-teal organization to design their technical component, we conducted a workshop that structures the collaboration between members. The workshop aims to transform "vague needs" and unexpressed problems into "problem statements" and further addressable goals.</p> <p>The workshop is the first part of series of workshops all limited to two hours. It uses the methods of <em>Design Thinking</em> and <em>Participatory Design</em>.</p> <p>The workshop is described by transcribed moderation cards that have been created during the workshop, material needed to conduct the workshop (e.g. agenda, etc.), and questionnaires assessing the workshop qualitatively.</p> <p>We hope that the material can be used to (a) comprehend the interpretation used in our qualitative research, (b) to adapt the workshop model by other volunteers of our case study Viva con Agua de St. Pauli e.V. (<a href="https://www.vivaconagua.org/">https://www.vivaconagua.org/</a>), and (c) investigate other interesting research questions.</p>
Inter-Chemical Correlation results for the study: HHEARx2017-1967 (Perfluoroalkyl and Polyfluroalkyl Substances (PFAS), Protein Biomarkers, Adiposity and Cardiometabolic Risk Factors in a 3-year Cohort of Low-Income Latino Children with Overweight and Obesity from the Stanford GOALS Randomized Controlled Trial)
Title: Perfluoroalkyl and Polyfluroalkyl Substances (PFAS), Protein Biomarkers, Adiposity and Cardiometabolic Risk Factors in a 3-year Cohort of Low-Income Latino Children with Overweight and Obesity from the Stanford GOALS Randomized Controlled Trial <br>Species: Homo sapiens <br>Number of samples: 1085 <br>Number of named analytes: 8 <br>Datasource url: https://hheardatacenter.mssm.edu/PublicFile/ViewPublicFile?projectid=36 <br>
Dataset: Does vendor breeding colony influence sign- and goal-tracking in Pavlovian conditioned approach?
<p>Vendor differences are thought to affect Pavlovian conditioning in rats. After observing possible differences in sign-tracking and goal-tracking behaviour with rats from different breeding colonies, we performed an empirical replication of the effect. 40 male Long-Evans rats from Charles River colonies ‘K72’ and ‘R06’ received 11 Pavlovian conditioned approach training sessions (or “autoshaping”), with a lever as the conditioned stimulus (CS) and 10% sucrose as the unconditioned stimulus (US). Each 58-min session consisted of 12 CS-US trials. Paired rats (n = 15/colony) received the US following lever retraction. Unpaired control rats (n = 5/colony) received sucrose during the inter-trial interval. Next, we evaluated the conditioned reinforcing properties of the CS, by determining whether rats would learn to nose-poke into a new, active (vs. inactive) port to receive CS presentations alone (no sucrose). Preregistered confirmatory analyses showed that during autoshaping sessions, Paired rats made significantly more CS-triggered entries into the sucrose port (i.e., goal-tracking) and lever activations (sign-tracking) than Unpaired rats did, demonstrating acquisition of the CS-US association. Confirmatory analyses showed no effects of breeding colony on autoshaping. During conditioned reinforcement testing, analysis of data from Paired rats alone showed significantly more active vs. inactive nosepokes, suggesting that in these rats, the lever CS acquired incentive motivational properties. Analysing Paired rats alone also showed that K72 rats had higher Pavlovian Conditioned Approach scores than R06 rats did. Thus, breeding colony can affect outcome in Pavlovian conditioned approach studies, and animal breeding source should be considered as a covariate in such work.Vendor differences are thought to affect Pavlovian conditioning in rats. After observing possible differences in sign-tracking and goal-tracking behaviour with rats from different breeding colonies, we performed an empirical replication of the effect. 40 male Long-Evans rats from Charles River colonies ‘K72’ and ‘R06’ received 11 Pavlovian conditioned approach training sessions (or “autoshaping”), with a lever as the conditioned stimulus (CS) and 10% sucrose as the unconditioned stimulus (US). Each 58-min session consisted of 12 CS-US trials. Paired rats (n = 15/colony) received the US following lever retraction. Unpaired control rats (n = 5/colony) received sucrose during the inter-trial interval. Next, we evaluated the conditioned reinforcing properties of the CS, by determining whether rats would learn to nose-poke into a new, active (vs. inactive) port to receive CS presentations alone (no sucrose). Preregistered confirmatory analyses showed that during autoshaping sessions, Paired rats made significantly more CS-triggered entries into the sucrose port (i.e., goal-tracking) and lever activations (sign-tracking) than Unpaired rats did, demonstrating acquisition of the CS-US association. Confirmatory analyses showed no effects of breeding colony on autoshaping. During conditioned reinforcement testing, analysis of data from Paired rats alone showed significantly more active vs. inactive nosepokes, suggesting that in these rats, the lever CS acquired incentive motivational properties. Analysing Paired rats alone also showed that K72 rats had higher Pavlovian Conditioned Approach scores than R06 rats did. Thus, breeding colony can affect outcome in Pavlovian conditioned approach studies, and animal breeding source should be considered as a covariate in such work.</p>
How Clarinettists Play Music to Acheive Expressive Goals
<p>Dataset used in article 'How Clarinettists play Music to Acheive Expressive Goals' submitted to New Music Research on July 2023</p>
Data for The Disparities and Development Trajectories of Nations in Achieving the Sustainable Development Goals
<p>This dataset provides the source data for Tables and Figures in the main text and the supplementary information, and the code for the main figure of the article.</p>
Maps of the Sustainable Development Goal (SDG) indicator 15.3.1 with its sub-indicators for the entire Amazon River Basin
<p>Maps of the SDG indicator 15.3.1 adopted by the United Nations Convention to Combat Desertification (UNCCD) together with its sub-indicators for the Amazon River Basin for the period 2001-2020. The sub-indicators are trajectory (or trend), state, and performance. The SDG indicator 15.3.1 was calculated using the procedures described in the second version of the Good Practice Guidance for SDG Indicator 15.3.1. The annual LCLU maps from the MapBiomas project at 30 m spatial resolution and the 16-day MOD13Q1 NDVI and SoilGrids dataset were used as inputs. In addition, annualized maps of drought severity derived from SPI12, SPEI12, and scPDSI are added. </p> <p>A total of seven GeoTIFF files in Geographic Tagged Image File Format (GeoTIFF) format are provided at 250 m spatial resolution.</p> <p>Coding for the SDG indicator 15.3.1, trajectory, state, and performance.</p> <p>-32768 is ‘No data’</p> <p>-1 is ‘Degraded’</p> <p>0 is ‘Stable’’</p> <p>1 is ‘Improvement’</p> <p>Coding for the drought severity.</p> <p>From 0 (minimum drought severity) to 1 (maximum drought severity).</p>
Emotion-Antecedent Appraisal Checks: EEG and EMG datasets for Goal Conduciveness, Control and Power
<p>The Electroencaphalography (EEG) and facial Electromyography (EMG) signals included in this dataset was collected in the context of a previous study (Gentsch, Grandjean & Scherer, 2013). This dataset contains the exact data used in Coutinho, Gentsch, van Peer, Scherer & Schuller (to appear). The only difference in relation to the original data is that the some of the pre-processing steps (i.e., the processing of the the raw data) were changed. The full details of the data collected and pre-processing are included in a file distributed with the data (dataset-details.pdf).</p> <p>References</p> <p>Coutinho, Gentsch, van Peer, Scherer & Schuller (to appear). Evidence of Emotion-Antecedent Appraisal Checks in Electroencephalography and Facial Electromyography. PloS One.</p> <p>Gentsch K, Grandjean D, Scherer KR. Temporal dynamics of event-related potentials related to goal conduciveness and power appraisals. Psychophysiology. 2013;50(10):1010–1022. </p>
Data set for "Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior"
<p>Data set for: Le Merre P, Esmaeili V, Charrière E, Galan K, Salin P-A, Petersen CCH, Crochet S (2018) Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior. Neuron, https://doi.org/10.1016/j.neuron.2017.11.031</p> <p>There are 44 files in this data upload:<br> 1. '2018_LeMerre_Neuron.pdf' - this is a pdf version of the online publication.<br> 2. 'Chronic_LFP_data.mat' - this is a Matlab data structure, which contains all the chronic LFP data for the publication.<br> 3. 'Silicon_Probe_data.mat' - this is a Matlab data structure, which contains all the mPFC silicon probe recording data for the publication.<br> 4. 'Opto_Inactivation_data.mat' - this is a Matlab data structure, which contains all the optogenetic inactivation data for the publication.<br> 5. 'Mus_Inactivation_data.mat' - this is a Matlab data structure, which contains all the pharmacological (Muscimol) inactivation data for the publication.<br> 6. 'Learning_Days_Mtrx.mat' - this is a Matlab data file, which contains the selected training days analyzed for the Trained condition in the Detection Task.<br> 7. 'Exposed_Days_Mtrx.mat' - this is a Matlab data file, which contains the selected days analyzed for the Exposed condition in the Neutral Exposure.<br> 8. 'p_value_colormap.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab codes 'plot_fig2A_SEP_D1_vs_Trained.m'; 'plot_fig2B_Amplitude_D1_vs_Trained.m'; 'plot_fig3A_SEP_D1_vs_Exposed.m'; 'plot_fig4A_SEP_H_vs_M.m’.<br> 9. 'p_value_colormap2.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m’; ’plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m’.<br> 10. 'scatterplot_colormap.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_fig2C_Scatterplot_Amplitude_vs_dprime.m'.<br> 11. 'SEP_colormtrx.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_fig1B_Sensory_Evoked_Potentials.m'; 'plot_figS3A_SEP_EMG_amplitude_ReactionTime.m'.<br> 12. 'zscore_colormap.mat' - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m'; 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m’.<br> 13. 'Chronic_LFP_dataViewer.fig' - this is a Matlab Figure file, which is the GUI layout for 'Chronic_LFP_dataViewer.m'.<br> 14. 'Chronic_LFP_dataViewer.m' - this is a Matlab code, which displays the data contained in 'Chronic_LFP_data.mat'.<br> 15. 'Silicon_Probe_dataViewer.fig' - this is a Matlab Figure file, which is the GUI layout for 'Silicon_Probe_dataViewer.m'.<br> 16. 'Silicon_Probe_dataViewer.m' - this is a Matlab code, which displays the data contained in 'Silicon_Probe_data.mat'.<br> 17. 'plot_fig1B_Sensory_Evoked_Potentials.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results published in figure 1, panel B (Le Merre et al., 2018).<br> 18. 'plot_fig1C_Silicon_Probe_Hit_trials.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 1, panel C (Le Merre et al., 2018).<br> 19. 'plot_fig2A_SEP_D1_vs_Trained.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 2, panel A (Le Merre et al., 2018).<br> 20. 'plot_fig2B_Amplitude_D1_vs_Trained.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 2, panel B (Le Merre et al., 2018).<br> 21. 'plot_fig2C_Scatterplot_Amplitude_vs_dprime.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 2, panel C (Le Merre et al., 2018).<br> 22. 'plot_fig3A_SEP_D1_vs_Exposed.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 3, panel A (Le Merre et al., 2018).<br> 23. 'plot_fig3B_Amplitude_D1_vs_Exposed.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 3, panel B (Le Merre et al., 2018).<br> 24. 'plot_fig3C_ROC_Trained_vs_Exposed.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the ROCs in the same way as the published figure 3, panel C (Le Merre et al., 2018).<br> 25. 'plot_fig3C_ROC_Randomization.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the label shuffled ROCs in the same way as the published figure 3, panel C (Le Merre et al., 2018).<br> 26. 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 3, panel D (Le Merre et al., 2018).<br> 27. 'plot_fig4A_SEP_H_vs_M.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 4, panel A (Le Merre et al., 2018).<br> 28. 'plot_fig4B_Amplitude_ H_vs_M.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure 4, panel B (Le Merre et al., 2018).<br> 29. 'plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 4, panel C, left panel (Le Merre et al., 2018).<br> 30. 'plot_fig4C_Scatterplot_modulation_Hit_vs_Miss.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure 4, panel C, right panel (Le Merre et al., 2018).<br> 31. 'plot_fig4D_Photoinhibitions.m' - this is a Matlab code, which analyses the data in 'Opto_Inactivation_data.mat', and displays the results published in figure 4, panel D (Le Merre et al., 2018).<br> 32. 'plot_figS2D_Performance_DetectionTask_NeutralExposition.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure S2, panel D (Le Merre et al., 2018).<br> 33. 'plot_figS3A_SEP_EMG_amplitude_ReactionTime.m' - this is a Matlab code, which analyses the data in 'Chronic_LFP_data.mat', and displays the results in the same way as the published figure S3, panel A (Le Merre et al., 2018).<br> 34. 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure S3, panel B (Le Merre et al., 2018).<br> 35. 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m' - this is a Matlab code, which analyses the data in 'Silicon_Probe_data.mat', and displays the results in the same way as the published figure S4, panel A (Le Merre et al., 2018).<br> 36. 'plot_figS4B_Pharmacological_Inactivations.m' - this is a Matlab code, which analyses the data in 'Mus_Inactivation_data.mat', and displays the results published in figure S4 (Le Merre et al., 2018).<br> 37. 'Load_LFP_Multisite_database.m' - this is a Matlab code, which is called in the Matlab codes that analyze the data in 'Chronic_LFP_data.mat'.<br> 38. 'Load_Silicon_Probe_database.m' - this is a Matlab code, which is called in the Matlab codes that analyze the data in 'Silicon_Probe_data.mat'.<br> 39. 'Load_Optogenetic_Inactivation_database.m' - this is a Matlab code, which is called in the Matlab code that analyzes the data in 'Opto_Inactivation_data.mat'.<br> 40. 'Load_Pharmacological_Inactivation_database.m' - this is a Matlab code, which is called in the Matlab code that analyzes the data in 'Mus_Inactivation_data.mat'.<br> 41. 'bonf_holm.m' - this is a Matlab code developed by D. M. Groppe, which is called in the Matlab code 'plot_figS4B_Pharmacological_Inactivations.m':<br> https://ch.mathworks.com/matlabcentral/fileexchange/28303-bonferroni-holm-correction-for-multiple-comparisons<br> 42. 'boundedline.m' - this is a Matlab code developed by K. Kearney, which is called in the Matlab codes 'plot_fig1C_Silicon_Probe_Hit_trials.m'; 'plot_fig2A_SEP_D1_vs_Trained.m'; 'plot_fig3A_SEP_D1_vs_Exposed.m’; 'plot_fig3C_ROC_Trained_vs_Exposed.m'; 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m'; 'plot_fig4A_SEP_H_vs_M.m'; 'plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m'; 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m'; 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m':<br> https://ch.mathworks.com/matlabcentral/fileexchange/27485-boundedline-m<br> 43. 'inpaint_nans.m' - this is a Matlab code, which is called in the Matlab code 'boundedline.m'.<br> 44. 'PSTH_Simple.m' - this is a Matlab code developed by V. Esmaeili, which is called in the Matlab codes 'plot_fig1C_Silicon_Probe_Hit_trials.m'; 'plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m'; 'plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m'; 'plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m'; 'plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m’.</p>
Data set for "Distinct contributions of whisker sensory cortex and tongue-jaw motor cortex in a goal-directed sensorimotor transformation"
<p>Data set for: Mayrhofer JM, El-Boustani S, Foustoukos G, Auffret M, Tamura K, Petersen CCH (2019) Distinct contributions of whisker sensory cortex and tongue-jaw motor cortex in a goal-directed sensorimotor transformation. Neuron https://doi.org/10.1016/j.neuron.2019.07.008</p> <p>There are 2 files in this upload:</p> <p>1. The file named "2019_Mayrhofer_Neuron.pdf" is the Open Access pdf file of the manuscript published in Neuron.</p> <p>2. The file named "Mayrhofer_data_code.zip" (~20 GB) is a zipped version of a folder "Mayrhofer_data_code" (~57 GB), which contains the data analysed in the study along with the Matlab code used to generate the published figures. The analysis code is in a subfolder named "MatlabCode", and the specific code for generating each figure panel is in a sub-subfolder named "Figures_tjM1_paper". When running the code, you need to set the Matlab file path to be "Mayrhofer_data_code". In addition, you should add the folder "Mayrhofer_data_code" with subfolders in Matlab "Set Path". The figures will be saved in a subfolder named "Figures". Some parts of the code rely upon previous results, and need to be executed sequentially in the order of the figure panels in the journal publication.</p>
GCAM input files for "Decarbonization pathways for Korea's industrial sector towards its 2050 carbon neutrality goal"
<p>GCAM input files for "Decarbonization pathways for Korea's industrial sector towards its 2050 carbon neutrality goal"</p>
DOI's with SDG labels on Target level | 1.4M research articles (2009-2020) related to Sustainable Development Goals
<p>Table content: This data set contains 1.4 million publication DOI's related to the <a href="http://metadata.un.org/sdg/">Targets of the Sustainable Development Goals</a> in the period 2009 - 2020.</p> <p>Table dimensions: rows: 1.4 million, columns: 4 / rows: 1.4 million, columns: 180</p> <p>Table columns: <a href="https://en.wikipedia.org/wiki/Digital_object_identifier">doi</a> | date | <a href="http://metadata.un.org/sdg/ontology#Target">sdg_target</a> | <a href="http://metadata.un.org/sdg/ontology#Goal">sdg_goal</a> / <a href="https://en.wikipedia.org/wiki/Digital_object_identifier">doi</a> | date | <a href="http://metadata.un.org/sdg/ontology#Target">169 sdg_targets</a> | <a href="http://metadata.un.org/sdg/ontology#Goal">17 sdg_goalsl</a></p> <p>Table formats: <a href="https://en.wikipedia.org/wiki/Comma-separated_values">.csv</a> | <a href="https://en.wikipedia.org/wiki/Microsoft_Excel">.xlsx</a> | <a href="https://en.wikipedia.org/wiki/Apache_Parquet">.parquet</a></p> <p><em>How we made this data:</em></p> <p>We have made a search on <a href="https://scopus.com">Scopus </a>using the <a href="https://aurora-network-global.github.io/sdg-queries/">Aurora SDG queries version 5</a> for each of the targets, with a limited year range from 2009 till 2020.</p> <p>Good to know: don't be alarmed if you can find a doi that is labeled with more than one target (~16%). This is not a bug, this is a feature... We used 169 queries, one for each target, a publication can appear in more han one result set.</p> <p>Read this <a href="https://zenodo.org/record/4964606/files/Evaluation_on_accuracy_of_mapping_science_to_the_United_Nations__Sustainable_Development_Goals__SDGs__of_the_Aurora_SDG_queries.pdf?download=1">report to learn more about the accuracy</a> of the queries and the data result sets.</p> <p><em>How can you use this data:</em></p> <p>You can use this data to 1. quickly match your existing publication lists to this list to see how that your publications are related to the targets of the SDG's. 2. use these as a basis / seed set / gold set to train more advanced text / graph classifiers (after you have extracted title, abstract or even full-text using crossref.org, unpaywall.org, etc)</p> <p><em>How can you help:</em></p> <p><a href="https://sites.google.com/vu.nl/aurora-sdg-research-dashboard/sdg-knowledge-base#h.d2pd3c39k276">Let us know</a> how you use this data. We'll put your project on the list in our <a href="https://sites.google.com/vu.nl/aurora-sdg-research-dashboard/sdg-knowledge-base">SDG matching knowledge base.</a></p>
Data and code for "Carbon neutrality should not be the end goal: Lessons for institutional climate action from U.S. higher education"
<p>Code and data for the paper "Carbon neutrality should not be the end goal: Lessons for institutional climate action from U.S. higher education"</p> <p>File descriptions:</p> <p>'HEI_analysis_OneEarth.Rmd' is the code with improved annotation and colorblind-friendly figures.</p> <p>All other data files are provided as excel and csv for convenience.</p> <p>'working_master_data' contains data from the Second Nature reporting platform on emissions by category for each institution analyzed in the paper (measured in metric tons). All adjustments necessary to fill in the data gaps in this file are documented at the beginning of 'HEI_analysis'.</p> <p>'offsets' contains data on the type(s) of offsets purchased by each school in their carbon neutral year (measured in metric tons). This data was assembled from a variety of sources which are documented at the beginning of 'HEI_analysis'.</p> <p>'carbon_neutral_years' contains yearly counts of higher education neutrality goals that were reported to Second Nature as of November 2020.</p>
Sustainable Development Goals (SDG) in citizen science - Dataset
<p>The assignment results of SDGs to CS project descriptions are provided in the following dataset. The analysis was conducted based on data retrieved from the CSTRack database on 2022/09/15. </p> <p>See further detail about the study in D2.2 section 7.3.</p> <p><strong>Content and grouping: </strong></p> <ul> <li> <p>The dataset contains the following details: Platform ID (from which platform the CS project descriptions were retrieved), Project Title (Name of the CS project), SDG assignment results (More details about the assignment technique can be found in D3.2 ‘Web Analytics Toolset and Workbench’ - ESA backend), SDG assignment reported in section 7.2 of D2.2 (which only considered the SDG assignment with the highest similarity).</p> </li> </ul>
Climate targets in European timber-producing countries conflict with goals on forest ecosystem services and biodiversity
<p>The repository contains the data and codes supporting the findings of the study:<strong> </strong>Climate targets in European timber-producing countries conflict with goals on forest ecosystem services and biodiversity, which can be found in the zip file "<strong>euclimate_vs_natpolicy-main.zip"</strong>. </p> <p>Further, the repository includes the raw forest simulation data used as input for the multi-objective optimizations and the raw optimization outputs of each study region. The codes to run the national optimization can be retrieved from <a href="http://doi.org/10.5281/zenodo.6631109">https://doi.org/10.5281/zenodo.6631109</a>.</p> <p>Abstract:</p> <p>The European Union (EU) set clear climate change mitigation targets to reach climate neutrality, accounting for forests and their woody biomass resources. We investigated the consequences of increased harvest demands resulting from EU climate targets. We analysed the impacts on national policy objectives for forest ecosystem services and biodiversity through empirical forest simulation and multi-objective optimization methods. We show that key European timber-producing countries – Finland, Sweden, Germany (Bavaria) – cannot fulfil the increased harvest demands linked to the ambitious 1.5°C target. Potentials for harvest increase only exists in the studied region Norway. However, focusing on EU climate targets conflicts with several national policies and causes adverse effects on multiple ecosystem services and biodiversity. We argue that the role of forests and their timber resources in achieving climate targets and societal decarbonization should not be overstated. Our study provides insight for other European countries challenged by conflicting policies and supports policymakers.</p>
Data for 'Nature's contributions to people and the Sustainable Development Goals in Nepal'
<p>Title: Data for 'Nature's contributions to people and the Sustainable Development Goals in Nepal'</p> <p>Recommended Citation: Adhikari, B., Prescott, G., Urbach, D., Chettri, N., & Fischer, M. (2022). Nature’s contributions to people and the sustainable development goals in Nepal. Environmental Research Letters. https://doi.org/10.1088/1748-9326/ac8e1e</p> <p>Principal Investigator: Markus Fischer (markus.fischer@ips.unibe.ch)</p> <p>Authors:<br> Biraj Adhikari (biraj.adhikari@ips.unibe.ch, ORCID: 0000-0002-4260-8706)<br> Graham W Prescott (graham.prescott.research@gmail.com, ORCID:0000-0001-5123-514X)<br> Davnah Urbach (davnah.payne@ips.unibe.ch, ORCID: 0000-0001-9170-7834)<br> Nakul Chettri (nakul.chettri@icimod.org, ORCID: 0000-0002-3338-8879)<br> Markus Fischer (markus.fischer@ips.unibe.ch, ORCID: 0000-0002-5589-5900)</p> <p>Date of data collection: November 2020 - August 2021<br> Location of data collection: Kathmandu, Nepal<br> Article title: 'Nature's contributions to people and the Sustainable Development Goals in Nepal'</p> <p>R code available at: https://github.com/biraj-ad/r4dLiteratureReview_GithubRep</p> <p>Data Overview:</p> <p>1. 'Literature_References.csv'<br> List of 119 peer-reviewed journals and 21 grey literature documents used in the review. Each is assigned a unique identifier ("SN Ref") to link it to the other files.</p> <p><br> 2. 'Drivers_and_Trends.csv'<br> The "Quote" column is the text from papers which has information on (i) trends in ecosystems or NCPs, and if available (ii) direct and/or indirect drivers causing the trends.<br> The "Nature" column indicates which ecosystem (Forest, Farmland, Freshwater, Grassland, Others, and Directly to NCP), the "NCP" column indicates which NCP (categorized into 18 categories based on the IPBES classification) the text refers to. The "NCP Category" column indicates whether the said NCP is a regulating, material or non-material NCP. <br> We also categorized direct and indirect drivers based on the IPBES classification (Direct Drivers: Land-use Change, Climate Change, Direct Exploitation, Invasive Alien Species, and Pollution; Indirect Drivers: Institutions and Governance, Demographic and Sociocultural, Economic and Technological). <br> If there were more than one drivers of change for a particular NCP, we have included them in additional columns. In order to avoid multiple counts for trends of a particular NCP, we introduced the "TrendCount" column. For example, columns 3, 4 and 5 refers to the same trend of decreasing WQN, but has 3 Direct Drivers. Therefore, each TrendCount is given a weight of 0.33 so that the total trend adds upto 1.</p> <p>3. 'NCP_to_SDG.csv'<br> The "Quote" Column is the text from papers which has information on which NCP is contributing towards which SDG. "Remarks from text" are the authors' own remarks based on the text and the overall context of the article.<br> The contribution of NCPs are classified as positive or negative, and indicated in the column "Effect (pos/neg)"<br> The "NCP" column indicates which NCP (categorized into 18 categories according to IPBES) the text refers to, while the "Contribution to SDG" column indicates which SDG the NCP is contributing towards.<br> The "Ecosystem" column indicates which ecosystem (Forest, Farmland, Freshwater, Grassland, Others) the NCP is being supplied from.</p> <p>Codes for NCPS:<br> HAB (Habitat Creation and Maintenance), POL (Pollination and dispersal of seeds and other propagules), AIR (Regulation of Air Quality), CLI (Regulation of Climate), WQN (Regulation of Freshwater Quantity, Location, and Timing), WQL (Regulation of Freshwater and Coastal Water Quality), SOI (Formation, Protection, and Decontamination of Soils and Sediments), HAZ (Regulation of Hazards and Extreme Events), ORG (Regulation of Organisms Detrimental to Humans), NRG (Energy), FOD (Food and Feed), MAT (Materials and Assistance), MED (Medicinal, Biochemical, and Genetic Resources), INS (Learning and Inspiration), EXP (Physical and Psychological Experiences), IDE (Supporting Identities), and OPT (Maintenance of Options).</p> <p>4. 'Data_consolidated.xlsx'<br> The above three data files combined into one xlsx document<br> </p> <p> </p> <p> </p>
Survey data of "Mapping Research Output to the Sustainable Development Goals (SDGs)"
<p><strong>This dataset contains information on what papers and concepts researchers find relevant to map domain specific research output to the 17 Sustainable Development Goals (SDGs).</strong></p> <p><a href="https://sustainabledevelopment.un.org/sdgs">Sustainable Development Goals</a> are the 17 global challenges set by the United Nations. Within each of the goals specific targets and indicators are mentioned to monitor the progress of reaching those goals by 2030. In an effort to capture how research is contributing to move the needle on those challenges, we earlier have made an initial classification model than enables to quickly identify what research output is related to what SDG. (This <a href="https://aurora-network.global/project/sdg-analysis-bibliometrics-relevance/">Aurora SDG dashboard</a> is the initial outcome as proof of practice.)</p> <p>In order to validate our current classification model (on soundness/precision and completeness/recall), and receive input for improvement, a survey has been conducted to<strong> capture expert knowledge from senior researchers in their research domain related to the SDG</strong>. The survey was open to the world, but mainly distributed to researchers from the <a href="https://aurora-network.global/">Aurora Universities Network</a>. <strong>The survey was open from October 2019 till January 2020, and captured data from 244 respondents in Europe and North America.</strong></p> <p>17 surveys were created from a single template, where the content was made specific for each SDG. Content, like a random set of publications, of each survey was ingested by a data provisioning server. That collected research output metadata for each SDG in an earlier stage. It took on average 1 hour for a respondent to complete the survey.<strong> The outcome of the survey data can be used for validating current and optimizing future SDG classification models for mapping research output to the SDGs</strong>.</p> <p><strong>The survey contains the following questions (see inside dataset for exact wording):</strong></p> <ul> <li><strong>Are you familiar with this SDG?</strong> <ul> <li>Respondents could only proceed if they were familiar with the targets and indicators of this SDG. Goal of this question was to weed out un knowledgeable respondents and to increase the quality of the survey data.</li> </ul> </li> <li><strong>Suggest research papers that are relevant for this SDG (upload list)</strong> <ul> <li>This question, to provide a list, was put first to reduce influenced by the other questions. Goal of this question was to measure the completeness/recall of the papers in the result set of our current classification model. (To lower the bar, these lists could be provided by either uploading a file from a reference manager (preferred) in .ris of bibtex format, or by a list of titles. This heterogenous input was processed further on by hand into a uniform format.)</li> </ul> </li> <li><strong>Select research papers that are relevant for this SDG (radio buttons: accept, reject)</strong> <ul> <li>A randomly selected set of 100 papers was injected in the survey, out of the full list of thousands of papers in the result set of our current classification model. Goal of this question was to measure the soundness/precision of our current classification model.</li> </ul> </li> <li><strong>Select and Suggest Keywords related to SDG (checkboxes: accept | text field: suggestions)</strong> <ul> <li>The survey was injected with the top 100 most frequent keywords that appeared in the metadata of the papers in the result set of the current classification model. respondents could select relevant keywords we found, and add ones in a blank text field. Goal of this question was to get suggestions for keywords we can use to increase the recall of relevant papers in a new classification model.</li> </ul> </li> <li><strong>Suggest SDG related glossaries with relevant keywords (text fields: url)</strong> <ul> <li>Open text field to add URL to lists with hundreds of relevant keywords related to this SDG. Goal of this question was to get suggestions for keywords we can use to increase the recall of relevant papers in a new classification model.</li> </ul> </li> <li><strong>Select and Suggest Journals fully related to SDG (checkboxes: accept | text field: suggestions)</strong> <ul> <li>The survey was injected with the top 100 most frequent journals that appeared in the metadata of the papers in the result set of the current classification model. Respondents could select relevant journals we found, and add ones in a blank text field. Goal of this question was to get suggestions for complete journals we can use to increase the recall of relevant papers in a new classification model.</li> </ul> </li> <li><strong>Suggest improvements for the current queries (text field: suggestions per target)</strong> <ul> <li>We showed respondents the queries we used in our current classification model next to each of the targets within the goal. Open text fields were presented to change, add, re-order, delete something (keywords, boolean operators, etc. ) in the query to improve it in their opinion. Goal of this question was to get suggestions we can use to increase the recall and precision of relevant papers in a new classification model.</li> </ul> </li> </ul> <p><strong>In the dataset root you'll find the following folders and files:</strong></p> <ul> <li><strong>/00-survey-input/</strong> <ul> <li>This contains the survey questions for all the individual SDGs. It also contains lists of EIDs categorised to the SDGs we used to make randomized selections from to present to the respondents.</li> </ul> </li> <li><strong>/01-raw-data/</strong> <ul> <li>This contains the raw survey output. (Excluding privacy sensitive information for public release.) This data needs to be combined with the data on the provisioning server to make sense.</li> </ul> </li> <li><strong>/02-aggregated-data/</strong> <ul> <li>This data is where individual responses are aggregated. Also the survey data is combined with the provisioning server, of all sdg surveys combined, responses are aggregated, and split per question type.</li> </ul> </li> <li><strong>/03-scripts/</strong> <ul> <li>This contains scripts to split data, and to add descriptive metadata for text analysis in a later stage.</li> </ul> </li> <li><strong>/04-processed-data/</strong> <ul> <li>This is the main final result that can be used for further analysis. Data is split by SDG into subdirectories, in there you'll find files per question type containing the aggregated data of the respondents.</li> </ul> </li> <li><strong>/images/</strong> <ul> <li>images of the results used in this README.md.</li> </ul> </li> <li><strong>LICENSE.md</strong> <ul> <li>terms and conditions for reusing this data.</li> </ul> </li> <li><strong>README.md</strong> <ul> <li>description of the dataset; each subfolders contains a README.md file to futher describe the content of each sub-folder.</li> </ul> </li> </ul> <p><strong>In the /04-processed-data/ you'll find in each SDG sub-folder the following files.:</strong></p> <ul> <li><strong>SDG-survey-questions.pdf</strong> <ul> <li>This file contains the survey questions</li> </ul> </li> <li><strong>SDG-survey-questions.doc</strong> <ul> <li>This file contains the survey questions</li> </ul> </li> <li><strong>SDG-survey-respondents-per-sdg.csv</strong> <ul> <li>Basic information about the survey and responses</li> </ul> </li> <li><strong>SDG-survey-city-heatmap.csv</strong> <ul> <li>Origin of the respondents per SDG survey</li> </ul> </li> <li><strong>SDG-survey-suggested-publications.txt</strong> <ul> <li>Formatted list of research papers researchers have uploaded or listed they want to see back in the result-set for this SDG.</li> </ul> </li> <li><strong>SDG-survey-suggested-publications-with-eid-match.csv</strong> <ul> <li>same as above, only matched with an EID. EIDs are matched my Elsevier's internal fuzzy matching algorithm. Only papers with high confidence are show with a match of an EID, referring to a record in Scopus.</li> </ul> </li> <li><strong>SDG-survey-selected-publications-accepted.csv</strong> <ul> <li>Based on our previous result set of papers, researchers were presented random samples, they selected papers they believe represent this SDG. (TRUE=accepted)</li> </ul> </li> <li><strong>SDG-survey-selected-publications-rejected.csv</strong> <ul> <li>Based on our previous result set of papers, researchers were presented random samples, they selected papers they believe not to represent this SDG. (FALSE=rejected)</li> </ul> </li> <li><strong>SDG-survey-selected-keywords.csv</strong> <ul> <li>Based on our previous result set of papers, we presented researchers the keywords that are in the metadata of those papers, they selected keywords they believe represent this SDG.</li> </ul> </li> <li><strong>SDG-survey-unselected-keywords.csv</strong> <ul> <li>As "selected-keywords", this is the list of keywords that respondents have not selected to represent this SDG.</li> </ul> </li> <li><strong>SDG-survey-suggested-keywords.csv</strong> <ul> <li>List of keywords researchers suggest to use to find papers related to this SDG</li> </ul> </li> <li><strong>SDG-survey-glossaries.csv</strong> <ul> <li>List of glossaries, containing keywords, researchers suggest to use to find papers related to this SDG</li> </ul> </li> <li><strong>SDG-survey-selected-journals.csv</strong> <ul> <li>Based on our previous result set of papers, we presented researchers the journals that are in the metadata of those papers, they selected journals they believe represent this SDG.</li> </ul> </li> <li><strong>SDG-survey-unselected-journals.csv</strong> <ul> <li>As "selected-journals", this is the list of journals that respondents have not selected to represent this SDG.</li> </ul> </li> <li><strong>SDG-survey-suggested-journals.csv</strong> <ul> <li>List of journals researchers suggest to use to find papers related to this SDG</li> </ul> </li> <li><strong>SDG-survey-suggested-query.csv</strong> <ul> <li>List of query improvements researchers suggest to use to find papers related to this SDG</li> </ul> </li> </ul> <p><strong>Cite as:</strong></p> <blockquote> <p><em>Survey data of "Mapping Research output to the SDGs"</em> by Aurora Universities Network (AUR) <a href="http://doi.org/10.5281/zenodo.3798385">doi:10.5281/zenodo.3798385</a></p> </blockquote> <p><strong>Attribute as:</strong></p> <blockquote> <p><em><strong>Survey data of "Mapping Research output to the SDGs</strong>"</em> by Aurora Universities Network (AUR); Alessandro Arienzo (UNA); Roberto Delle Donne (UNA); Ignasi Salvadó Estivill (URV); José Luis González Ugarte (URV); Didier Vercueil (UGA); Nykohla Strong (UAB); Eike Spielberg (UDE); Felix Schmidt (UDE); Linda Hasse (UDE); Ane Sesma (UEA); Baldvin Zarioh (UIC); Friedrich Gaigg (UIN); René Otten (VUA); Nicolien van der Grijp (VUA); Yasin Gunes (VUA); Peter van den Besselaar (VUA); Joeri Both (VUA); Maurice Vanderfeesten (VUA);<strong> is licensed under a Creative Commons Attribution 4.0 International License.</strong> <a href="https://aurora-network.global/project/sdg-analysis-bibliometrics-relevance/">https://aurora-network.global/project/sdg-analysis-bibliometrics-relevance/</a></p> </blockquote>
Values and attitudes associated with public support for biodiversity and ecosystem services as goals of ecological restoration
<p>Source data and metadata for "Public support for restoration: Does including ecosystem services as a goal engage a different set of values and attitudes than biodiversity protection alone?", accepted to PLOS One in December 2020. </p>
Data set for "Distributed and specific encoding of sensory, motor and decision information in the mouse neocortex during goal-directed behavior"
<p>Data set for: Oryshchuk A, Sourmpis C, Weverbergh J, Asri R, Esmaeili V, Modirshanechi A, Gerstner W, Petersen CCH, Crochet S (2024) Distributed and specific encoding of sensory, motor and decision information in the mouse neocortex during goal-directed behavior. Cell Reports 43: 113618. https://doi.org/10.1016/j.celrep.2023.113618</p> <p> </p> <p>There are 2 files in this upload:</p> <p> </p> <p>1. The file named "2024_Oryshchuk_CellReports.pdf" is the Open Access pdf of the online publication in Cell Reports.</p> <p> </p> <p>2. The file named " Oryshchuk _data_code.zip" (~1.8 GB) is a zipped version of a folder "Oryshchuk _data_code" (~2.3 GB), which contains the preprocessed data analyzed in the study along with the Matlab and Python codes used to generate the published figures. To access the data and codes, first unzip the file.</p> <p>· The subfolder “Atlas” contains templates from the Allen Mouse Brain Reference Altas of anatomical brain sections used to map the location of the silicon probes (Supplementary Figure S1).</p> <p>· The subfolder “Clustering-master” contains the Matlab codes used for the clustering on neuronal activity (Figure 1). The output is the data structure ‘Data_Clustering.mat’ file already provided in the folder ‘Data’.</p> <p>· The subfolder “Code” contains the main Matlab codes used to analyze the data and plot the figures. The ouput from the clustering and decoding analyses are provided in the ‘Data’ folder, thus the Matlab codes can be run independently, without running the ‘clustering’ or ‘decoding’ codes first.</p> <p>· The subfolder “Data” contains the Matlab data structures containing the electrophysiological and behavioral data from whisker rewarded (‘DataWR.mat’) and non-rewarded (‘DataWnonR.mat’) mice, the behavioral data for optogenetic inactivation in rewarded mice, the clustering results (‘Data_Clustering.mat’) and a subfolder containing the results from the decoding analyses (“Decoding”).</p> <p>· The subfolder “decoding” contains the Python codes used for the decoding analyses. The required configuration can be found in the file ‘requirements.txt’. To run the codes, follow instructions from the ‘README.md’ file.</p> <p>· The subfolder “Figures” will be populated with figures saved in .png and .eps formats as well as a ‘Methods.txt’ files when running the main Matlab codes.</p> <p>· The subfolder “Functions” contains subfunctions used by the main Matlab codes to analyze the data and plot the figures.</p> <p>· The subfolder “Results” will be populated with Matlab data structures as well as a ‘.xlsx’ files when running the main Matlab codes.</p> <p>When running the code, you need to set the Matlab file path to be "Oryshchuk _data_code". In addition, you should add the folder "Oryshchuk_data_code" with subfolders to the Matlab path. Some parts of the code rely upon previous results, and need to be executed sequentially in the order of the figure panels in the journal publication. Please note that some of the code can take several hours to execute.</p>
Supporting Material: Scientific Literature on the Sustainable Development Goals (SDGs). Scopus - May 2022
<p>This is a supplementary dataset for an article analysing the scientific literature related to the Sustainable Development Goals (SDGs) using Scopus-indexed journals. </p> <p>Data were retrieved in May 2022. Scopus was searched in the Title, Abstract, and Keywords fields looking for each of the 17 SDGs (search query example: TITLE-ABS-KEY (“SDG1” or "SDG 1").</p> <p>The dataset includes the following information for each of the 4808 scientific publication:</p> <p>ID: an identificatory alphanumerical number given by the authors</p> <p>Primary SDG: the main SDG the document focus on (MULTIPLE in case of more than one, ALL in case of all the SDGs)</p> <p>Year: Year of publication</p> <p>Title: title of the publication</p> <p>Abstract: abstract of the publication</p> <p>Index keywords: keywords of the publication</p> <p> </p>
Dataset of Mordvin GOAL-cases
<p>This open access dataset contains examples of the goal-oriented cases illative and lative in Mordvin languages Erzya and Moksha. The dataset consists of two parts: senses of the goal-cases (files with prefix sense) and type of the landmark noun (files with prefix LM). There is currently one dataset that includes 200 analyzed examples of each case in each language (800 examples in total). All the data is analyzed according to sense and landmark type. The data is collected from MokshEr corpus maintained by University of Turku.</p> <p>Sense means the semantic content that is expressed by the goal-case in a clause. The following values are found in the data: direction, location, part, place, purpose, reason, result, staying, target, and temporal. In addition, contextual variants of the senses are shown in brackets.</p> <p>Landmark type means what kind of entity the referent of the landmark is. There are eight categories in the data: 1D object, 2D bounded landmark, 2D unbounded landmark, 3D bounded landmark, 3D unbounded landmark, abstract landmark, institution, and temporal landmark.</p> <p> </p> <p>The senses-data is annotated for following information:</p> <ol> <li>The noun or relational noun phrase inflected in goal-case.</li> <li>The predicate as inflected in the data.</li> <li>Translations of both (mainly in citation form, but in predicate sometimes with some grammatical information)</li> <li>The sense of the goal-case in the utterance.</li> <li>The prototypicality of the example as a member of its sense on a scale from 1 (non- prototypical) to 5 (prototypical) NB! This assessment is based on the authors language competence and on general semantic principles, and as such should be considered only as directive.</li> <li>The original sentence from the corpus.</li> <li>Free translation. Some of the translations are done following the lexical meanings and syntactic structures of Mordvin languages, so the English is unidiomatic from time to time.</li> <li>The file name with which the original sentence can be located in the corpus.</li> </ol> <p> </p> <p>The landmark-data is annotated for the same information, except that there is additional information of the landmark type, and the prototypicality score is a value from 1 (non-prototypical) to 4 (prototypical) showing how prototypical the referent of the landmark is in its landmark type. Score 0 means that the prototypicality scale is not applied to the landmark type in question. Unlike in sense-data, the prototypicality in the landmark-data is based on prelinguistic spatial primitives of containment and support, as well as the human ability to recognize boundaries.</p> <p>The author of this dataset is Riku Erkkilä and it is published under CC-BY-NC-ND licence. The data is originally collected in the framework of Descriptive Grammar of Mordvin project (University of Helsinki) funded by Kone Foundation. If used in a publication, please refer to this publication as well as mention the original source:</p> <ul> <li>MokshEr V.3 (2010). Corpus of Mordvin languages. University of Turku.</li> </ul> <p> </p> <p>This dataset has been used in following publications:</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.