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10 results for “Hypsimetopidae”
Evidence for Early Mesozoic diversification of Hypsimetopidae Nicholls, 1943 (Isopoda), with the description of a new genus from Andhra Pradesh and notes on threats to Indian cave environments
<p>Datafiles and scripts for https://doi.org/10.1093/jcbiol/ruac052</p> <p>Evidence for Early Mesozoic diversification of Hypsimetopidae Nicholls, 1943 (Isopoda), with the description of a new genus from Andhra Pradesh and notes on threats to Indian cave environments</p> <p>George D. F. Wilson1,2 and Shabuddin Shaik 3</p> <p>1 Saugatuck Natural History Laboratory, Saugatuck, MI, USA; gdfw@snhlab.com</p> <p>3 Department of Life Science, Central University of Karnataka, Kadaganchi, 585 367, India; shabu.biologist@gmail.com</p> <p>2 Corresponding author: George D. F. Wilson, P. O. Box 714, Saugatuck, Michigan 49453, USA. e-mail: gdfw@snhlab.com </p> <p>File List:</p> <p>Phreatoi20220525.nex <br> Mesquite data file that contains all data from the DELTA taxonomic database that were used for data presentation, organization, analysis, as well as trees resulting from all analyses. For Mesquite version 3.70; Maddison WP, Maddison DR. 2021. Mesquite: a modular system for evolutionary analysis. Version 3.6 University of British Columbia & Oregon State University., http://www.mesquiteproject.org/ <br> <br> The DELTA database is still being edited and changed so it is not included here<br> For DELTA, see website https://www.delta-intkey.com/<br> publications:<br> Dallwitz MJ. 1980. A general system for coding taxonomic descriptions. TAXON 29: 41-46.<br> Dallwitz MJ, Paine TA, Zurcher EJ. 2000. User's guide to the DELTA system: a general system for processing taxonomic descriptions. CSIRO: Canberra.</p> <p> <br> Phreatoi20220525.tnt - the TNT data file generated by Mesquite<br> Analyses were performed using TNT-64bit, version 1.5, Goloboff PA, Catalano SA. 2016. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 32: 221-238.<br> Note: TNT counts zero as a number so the first tree, taxon or k paramter is 0, the second is 1, the third is 2 and so on </p> <p>TNT Scripts were written or modified for this project by George D. F. Wilson. They were run using the console in Ubuntu 20.04 but should work using the console version of TNT in other operating systems available from http://www.lillo.org.ar/phylogeny/tnt/. I recommend using the console because it allows you do to multiple analysis with one script. </p> <p>Each script has a banner that explains what is being done. If this fails to appear the first time, enter n and restart the script</p> <p>These are easily modified in a text editor to change the analysis<br> -- tnt.run : standard run of tnt. <br> -- tnt-jacK.run : symmetric jackknife analysis with concavity parameter, select file, concavity and prob parameter <br> -- piwe_rangeK.run : A range of concavity parameters are selected at the beginning and run sequentially<br> -- setk_trans.run : Modified from setk.run by Salvador Arias, Instituto Miguel Lillo, San Miguel de Tucuman, Argentina<br> -- aquickie_bt1000.run : Modified from the standard script distributed with TNT with more iterations of jackknifing<br> <br> If you are new to using TNT, see the information available on http://www.lillo.org.ar/phylogeny/tnt/ as well as these articles:<br> Goloboff PA. 1993. Estimating character weights during tree search. Cladistics 9: 83-91.<br> Goloboff PA. 1997. Self-Weighted Optimization: Tree Searches and Character State Reconstructions under Implied Transformation Costs. Cladistics 13: 225-245.<br> Goloboff PA, Carpenter JM, Arias JS, Esquivel DRM. 2008. Weighting against homoplasy improves phylogenetic analysis of morphological data sets. Cladistics 24: 758-773.<br> Goloboff PA, Catalano SA. 2016. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 32: 221-238.<br> Goloboff PA, Farris JS. 2001. Methods for Quick Consensus Estimation. Cladistics 17: S26-S34.<br> Goloboff PA, Farris JS, Källersjö M, Oxelman B, Ramírez MJ, Szumik CA. 2003. Improvements to resampling measures of group support. Cladistics 19: 324-332.<br> Goloboff PA, Farris JS, Nixon KC. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.</p>
FIGURE 5 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 5. Andhracoides shabuddin gen. nov., sp. nov. Paratype male, AM P.81107, mouthparts. A–B, left maxillula, ventral and medial view of lateral lobe; C–D, left maxilla, ventral view and ventrolateral view of lateral lobe; E–F, right maxilliped, ventral view and medial view of endite. Scale bars = 0.5 mm.
FIGURE 4 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 4. Andhracoides shabuddin gen. nov., sp. nov. Paratype male, AM P.81107. Mandible: A, left palp, dorsal view; B, right gnathal tip, medial view; C, left, medial view; D, left gnathal margin, dorsal view; E, right gnathal margin, ventral view; F, paragnath, ventral view. Scale bars = 0.5 mm.
FIGURE 1 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 1. Guthikonda Cave (A–C): (A) cave entrance; (B) a cave pool; (C) method of collection; and (D) distribution map of Andhracoides species in Andhra Pradesh State.
FIGURE 3 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 3. Andhracoides shabuddin gen. nov., sp. nov., head. Paratype male, AM P.81107: A, head, lateral view; B, dorsal view; C, antennula and antenna; D, antennula with enlargements of distal articles; E, paratype female, AM P.81108, head and pereopod I lateral view. Scale bars = 1 mm.
FIGURE 8 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 8. Andhracoides shabuddin gen. nov., sp. nov. Paratype male, AM P.84983, pleopods, dorsal view. A, pleopod I; B– C, pleopod II, with enlargement of appendix masculina; D–E, pleopods III–V. Scale bar = 1 mm.
FIGURE 2 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 2. Andhracoides shabuddin gen. nov., sp. nov. Holotype male, AM P.81105: A. lateral view; B, dorsal view; C, head and pereonites 1–3; D, pleotelson; E, paratype female, AM P.81106, lateral view. Scale bars = 5 mm.
FIGURE 7 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 7. Andhracoides shabuddin gen. nov., sp. nov. Paratype male, AM P.81107: A, right pereopod V, right lateral view with enlargement of propodus and dactylus; B, pereopod VII, lateral view with enlargement of propodus and dactylus; C, penes, right side, posteromedial view; D–E, appendix masculina, dorsal and ventral views. Scale bars: A–C = 1 mm; D–E = 0.2 mm.
FIGURE 6 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 6. Andhracoides shabuddin gen. nov., sp. nov., anterior pereopods. A, paratype female, AM P.81108, pereopod I, lateral view with enlargement of palm region, medial view. Paratype male, AM P.81107: B, pereopod I, lateral view with enlargement of palm region; C–E, pereopods II–IV, lateral view with enlargements of dactylus and propodus. Scale bars = 1 mm.
FIGURE 9 in Andhracoides shabuddin gen. nov., sp. nov., a new phreatoicidean isopod (Crustacea, Hypsimetopidae) from hypogean aquatic habitats in Andhra Pradesh, India
FIGURE 9. Andhracoides shabuddin gen. nov., sp. nov., pleotelson and uropods. Paratype male, AM P.81107: A, pleotelson dorsal and lateral views; B, left uropod, dorsal and medial views; C, pleotelson distal margin and anus, ventral view; D, pleotelson distal margin and uropod protopod, dorsal view; E, distoventral margin of left uropod protopod. Paratype female, AM P.81108: F, pleotelson, dorsal view; G, pleotelson distal margin and uropod protopod, dorsal view; H, pleotelson and right uropod, dorsolateral oblique view. Scale bars = 1mm.
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